Wall clock time and date at job start Wed Apr 1 2020 04:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86799 * 119.99931 * 2 1 4 4 H 1.48497 * 109.47558 * 270.00527 * 3 2 1 5 5 H 1.48501 * 109.46979 * 30.00171 * 3 2 1 6 6 H 1.48496 * 109.47500 * 150.00047 * 3 2 1 7 7 C 1.40034 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99648 * 189.81654 * 7 2 1 9 9 C 1.41545 * 119.99684 * 9.80843 * 7 2 1 10 10 C 1.41169 * 120.99898 * 28.29835 * 9 7 2 11 11 C 1.37586 * 119.01640 * 180.02562 * 10 9 7 12 12 N 1.32080 * 121.10994 * 0.02562 * 11 10 9 13 13 C 1.32465 * 122.22937 * 0.02562 * 12 11 10 14 14 N 1.39477 * 119.57603 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00440 * 5.39071 * 14 13 12 16 16 O 1.21280 * 119.99609 * 354.97567 * 15 14 13 17 17 C 1.50695 * 120.00470 * 174.98558 * 15 14 13 18 18 N 1.46500 * 109.47486 * 179.97438 * 17 15 14 19 19 C 1.45747 * 117.94586 * 269.73664 * 18 17 15 20 20 C 1.52737 * 110.58820 * 198.89024 * 19 18 17 21 21 C 1.53345 * 108.82187 * 309.60961 * 20 19 18 22 22 C 1.53071 * 108.42388 * 67.36910 * 21 20 19 23 23 H 1.09000 * 109.40279 * 71.22840 * 22 21 20 24 24 C 1.50694 * 109.33232 * 191.01866 * 22 21 20 25 25 O 1.20833 * 120.00195 * 0.37902 * 24 22 21 26 26 O 1.34232 * 120.00318 * 180.38730 * 24 22 21 27 27 C 1.33349 * 117.94791 * 89.99566 * 18 17 15 28 28 O 1.21282 * 118.24497 * 357.80159 * 27 18 17 29 29 C 1.38593 * 120.84495 * 359.97438 * 13 12 11 30 30 H 0.96993 * 120.00013 * 0.02562 * 1 2 3 31 31 H 1.08009 * 120.48964 * 0.04271 * 10 9 7 32 32 H 1.08000 * 119.44377 * 179.71666 * 11 10 9 33 33 H 0.97006 * 119.99427 * 185.39045 * 14 13 12 34 34 H 1.09001 * 109.46804 * 300.00049 * 17 15 14 35 35 H 1.09003 * 109.47159 * 59.99061 * 17 15 14 36 36 H 1.09005 * 109.30530 * 319.38576 * 19 18 17 37 37 H 1.08999 * 109.30083 * 78.76062 * 19 18 17 38 38 H 1.09005 * 109.66560 * 189.73199 * 20 19 18 39 39 H 1.09001 * 109.53322 * 69.41240 * 20 19 18 40 40 H 1.08997 * 109.67483 * 307.63996 * 21 20 19 41 41 H 1.08998 * 109.67894 * 187.10195 * 21 20 19 42 42 H 0.96694 * 117.00425 * 179.97438 * 26 24 22 43 43 H 1.07996 * 120.60541 * 180.02562 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4888 2.0466 -1.4000 5 1 1.4388 2.6526 0.7001 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0758 -1.2195 0.1589 9 6 1.3154 -2.4294 -0.2099 10 6 0.1285 -2.4687 -0.9732 11 6 -0.5115 -3.6736 -1.1504 12 7 -0.0338 -4.7847 -0.6194 13 6 1.0749 -4.8014 0.1054 14 7 1.5293 -6.0066 0.6406 15 6 0.9046 -7.1598 0.3305 16 8 -0.1062 -7.1407 -0.3394 17 6 1.4619 -8.4730 0.8164 18 7 0.6079 -9.5683 0.3503 19 6 -0.4945 -9.9869 1.2069 20 6 -0.9724 -11.3856 0.8222 21 6 -1.2176 -11.4258 -0.6910 22 6 0.1297 -11.2831 -1.4034 23 1 0.7081 -12.1974 -1.2707 24 6 -0.1056 -11.0484 -2.8733 25 8 -1.2334 -10.9937 -3.3034 26 8 0.9377 -10.9003 -3.7048 27 6 0.8911 -10.1233 -0.8287 28 8 1.8133 -9.6673 -1.4710 29 6 1.7890 -3.6368 0.3387 30 1 -0.4850 0.8400 -0.0004 31 1 -0.2710 -1.5661 -1.4118 32 1 -1.4225 -3.7108 -1.7292 33 1 2.2951 -6.0146 1.2360 34 1 2.4705 -8.6065 0.4254 35 1 1.4916 -8.4742 1.9060 36 1 -0.1627 -9.9905 2.2452 37 1 -1.3214 -9.2850 1.0986 38 1 -1.8989 -11.6145 1.3489 39 1 -0.2098 -12.1174 1.0886 40 1 -1.8735 -10.6041 -0.9785 41 1 -1.6778 -12.3757 -0.9632 42 1 0.7370 -10.7522 -4.6390 43 1 2.6926 -3.6549 0.9299 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:49 Heat of formation + Delta-G solvation = -140.914733 kcal Electronic energy + Delta-G solvation = -30195.643864 eV Core-core repulsion = 25819.020374 eV Total energy + Delta-G solvation = -4376.623490 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.35269 -41.31340 -40.62006 -39.39551 -37.78577 -37.09744 -36.26642 -35.32532 -35.16005 -32.62006 -31.37544 -30.77864 -28.71232 -27.90972 -26.59864 -24.15638 -23.70714 -23.23682 -22.80206 -21.37335 -19.88314 -19.58666 -19.36134 -18.41697 -18.32346 -17.99140 -17.68994 -17.41125 -16.86300 -16.31492 -16.23272 -16.04162 -15.98818 -15.62999 -15.34711 -15.07872 -14.70748 -14.52286 -14.39533 -14.31581 -14.24111 -14.20652 -13.23726 -13.05060 -12.95785 -12.91362 -12.85344 -12.66667 -12.46433 -12.26555 -12.11567 -11.98260 -11.85569 -11.76505 -11.49192 -11.23755 -11.13977 -10.89519 -9.98796 -9.97134 -9.54302 -8.88958 -8.63081 -6.60912 0.72086 0.81034 0.94014 1.34090 1.39962 1.52277 1.54707 1.77246 1.87271 2.06347 2.18714 2.31522 2.80684 3.29490 3.43388 3.61914 3.70751 3.76525 3.89544 4.15223 4.16550 4.21140 4.31343 4.39683 4.47683 4.62231 4.71100 4.79548 4.81458 4.90482 4.98718 5.01508 5.07428 5.22299 5.24098 5.30813 5.42800 5.46455 5.61170 5.92958 6.10385 6.24063 6.42630 6.59549 6.77151 6.80622 6.84019 6.93598 7.29560 7.81075 8.28132 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.002297 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.771681 B =12189.230945 C =12549.587769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.034 3.966 3 Si 0.993 3.007 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.253 1.253 7 C -0.484 4.484 8 H 0.088 0.912 9 C 0.118 3.882 10 C -0.238 4.238 11 C 0.093 3.907 12 N -0.577 5.577 13 C 0.345 3.655 14 N -0.649 5.649 15 C 0.476 3.524 16 O -0.524 6.524 17 C 0.099 3.901 18 N -0.577 5.577 19 C 0.098 3.902 20 C -0.120 4.120 21 C -0.110 4.110 22 C -0.090 4.090 23 H 0.179 0.821 24 C 0.493 3.507 25 O -0.540 6.540 26 O -0.501 6.501 27 C 0.519 3.481 28 O -0.569 6.569 29 C -0.308 4.308 30 H 0.291 0.709 31 H 0.116 0.884 32 H 0.134 0.866 33 H 0.428 0.572 34 H 0.124 0.876 35 H 0.164 0.836 36 H 0.120 0.880 37 H 0.048 0.952 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.051 0.949 41 H 0.108 0.892 42 H 0.424 0.576 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 -22.382 6.589 23.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.182 4.182 3 Si 0.813 3.187 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.177 1.177 7 C -0.515 4.515 8 H 0.106 0.894 9 C 0.110 3.890 10 C -0.262 4.262 11 C -0.058 4.058 12 N -0.297 5.297 13 C 0.116 3.884 14 N -0.298 5.298 15 C 0.262 3.738 16 O -0.396 6.396 17 C -0.028 4.028 18 N -0.308 5.308 19 C -0.023 4.023 20 C -0.157 4.157 21 C -0.148 4.148 22 C -0.112 4.112 23 H 0.196 0.804 24 C 0.336 3.664 25 O -0.430 6.430 26 O -0.313 6.313 27 C 0.306 3.694 28 O -0.448 6.448 29 C -0.334 4.334 30 H 0.102 0.898 31 H 0.134 0.866 32 H 0.152 0.848 33 H 0.267 0.733 34 H 0.141 0.859 35 H 0.181 0.819 36 H 0.138 0.862 37 H 0.066 0.934 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.070 0.930 41 H 0.126 0.874 42 H 0.285 0.715 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.605 -22.961 5.937 23.770 hybrid contribution 0.521 2.210 -0.795 2.406 sum 2.126 -20.750 5.142 21.484 Atomic orbital electron populations 1.69817 1.09186 1.30916 1.34956 1.26905 0.95630 1.04862 0.90844 0.85035 0.79004 0.75158 0.79513 1.18804 1.19255 1.17652 1.19875 0.96284 0.90705 1.44616 0.89398 1.18016 0.91110 0.93001 0.86899 1.22197 1.00978 0.97676 1.05308 1.22140 0.98377 0.88081 0.97214 1.67323 1.14933 1.30331 1.17127 1.18348 0.91165 0.85662 0.93196 1.43431 1.33856 1.03952 1.48572 1.22248 0.84373 0.86730 0.80497 1.90780 1.24799 1.87005 1.36993 1.21580 0.96112 0.81408 1.03652 1.46956 1.31567 1.32712 1.19535 1.21860 0.87952 0.97170 0.95358 1.21890 1.05049 0.95282 0.93477 1.21688 0.92320 1.04688 0.96068 1.21273 1.01843 1.00737 0.87303 0.80385 1.23080 0.81994 0.71239 0.90121 1.90725 1.25621 1.47950 1.78712 1.84610 1.38794 1.82518 1.25340 1.19794 0.84069 0.84391 0.81150 1.90793 1.32339 1.63490 1.58180 1.21473 1.06145 0.92368 1.13366 0.89834 0.86567 0.84831 0.73285 0.85851 0.81899 0.86152 0.93375 0.86298 0.87616 0.93020 0.87378 0.71510 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.43 10.83 21.84 0.24 -42.19 16 2 C 0.03 1.65 5.30 85.29 0.45 2.10 16 3 Si 0.99 36.80 29.57 68.60 2.03 38.83 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 6 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 7 C -0.48 -25.30 9.13 23.52 0.21 -25.08 16 8 H 0.09 4.31 7.87 -2.91 -0.02 4.29 16 9 C 0.12 6.42 5.58 -21.11 -0.12 6.31 16 10 C -0.24 -13.13 8.75 22.84 0.20 -12.94 16 11 C 0.09 4.98 11.15 84.50 0.94 5.92 16 12 N -0.58 -31.10 7.85 -193.54 -1.52 -32.62 16 13 C 0.35 16.57 7.42 132.75 0.98 17.56 16 14 N -0.65 -23.22 5.39 -308.67 -1.66 -24.89 16 15 C 0.48 16.82 7.84 87.66 0.69 17.51 16 16 O -0.52 -24.46 14.68 -3.03 -0.04 -24.50 16 17 C 0.10 2.12 5.68 85.63 0.49 2.60 16 18 N -0.58 -12.47 2.31 -831.36 -1.92 -14.39 16 19 C 0.10 1.36 6.38 86.43 0.55 1.91 16 20 C -0.12 -0.96 6.01 30.62 0.18 -0.77 16 21 C -0.11 -1.67 4.78 30.73 0.15 -1.52 16 22 C -0.09 -1.75 2.87 -12.43 -0.04 -1.78 16 23 H 0.18 1.95 8.14 -2.39 -0.02 1.93 16 24 C 0.49 12.87 7.51 71.23 0.54 13.41 16 25 O -0.54 -16.92 16.54 21.94 0.36 -16.55 16 26 O -0.50 -12.16 12.39 -45.73 -0.57 -12.73 16 27 C 0.52 13.57 7.01 87.71 0.61 14.19 16 28 O -0.57 -19.77 14.86 13.35 0.20 -19.58 16 29 C -0.31 -15.01 9.73 22.98 0.22 -14.79 16 30 H 0.29 13.51 8.29 -92.71 -0.77 12.74 16 31 H 0.12 6.55 6.27 -2.91 -0.02 6.53 16 32 H 0.13 6.55 8.06 -2.91 -0.02 6.53 16 33 H 0.43 10.86 8.70 -92.70 -0.81 10.05 16 34 H 0.12 2.58 7.21 -2.39 -0.02 2.56 16 35 H 0.16 1.68 7.86 -2.39 -0.02 1.66 16 36 H 0.12 0.77 7.92 -2.38 -0.02 0.75 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 39 H 0.11 0.31 8.12 -2.39 -0.02 0.29 16 40 H 0.05 1.19 7.72 -2.39 -0.02 1.17 16 41 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.42 6.77 9.10 -74.06 -0.67 6.09 16 43 H 0.13 5.36 8.06 -2.91 -0.02 5.34 16 Total: -1.00 -90.20 368.61 2.80 -87.41 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: -0.39 Total: 36.59 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: 6.07 Total: 24.61 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -4.86 Total: -114.09 kcal Atomic # 8 Polarization: -73.31 SS G_CDS: -0.05 Total: -73.36 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.83 kcal Total: -90.20 2.80 -87.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.509 kcal (2) G-P(sol) polarization free energy of solvation -90.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds