Wall clock time and date at job start Wed Apr 1 2020 04:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 120.00326 * 2 1 4 4 H 1.48495 * 109.47220 * 270.00229 * 3 2 1 5 5 H 1.48505 * 109.46938 * 29.99929 * 3 2 1 6 6 H 1.48495 * 109.47340 * 149.99378 * 3 2 1 7 7 C 1.38959 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99742 * 359.97438 * 7 2 1 9 9 N 1.37091 * 120.00269 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00283 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99682 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00260 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47033 * 180.02562 * 12 10 9 14 14 C 1.46963 * 111.00117 * 66.17967 * 13 12 10 15 15 C 1.53051 * 109.36407 * 183.16618 * 14 13 12 16 16 N 1.46954 * 109.38322 * 301.62898 * 15 14 13 17 17 C 1.46899 * 111.00276 * 183.17488 * 16 15 14 18 18 H 1.09001 * 109.63868 * 55.84845 * 17 16 15 19 19 C 1.54161 * 109.64783 * 295.41958 * 17 16 15 20 20 S 1.82920 * 105.08632 * 212.23419 * 19 17 16 21 21 O 1.42097 * 109.35123 * 115.52270 * 20 19 17 22 22 O 1.42093 * 109.35219 * 248.59251 * 20 19 17 23 23 C 1.83292 * 97.01434 * 2.12401 * 20 19 17 24 24 C 1.53877 * 109.64747 * 176.13927 * 17 16 15 25 25 H 1.09001 * 110.02570 * 47.74773 * 24 17 16 26 26 O 1.42898 * 110.02673 * 286.32858 * 24 17 16 27 27 C 1.46958 * 110.88073 * 59.30880 * 16 15 14 28 28 C 1.46954 * 110.99904 * 189.99889 * 13 12 10 29 29 H 0.97004 * 119.99762 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00058 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47028 * 60.00342 * 12 10 9 32 32 H 1.09003 * 109.46660 * 300.00362 * 12 10 9 33 33 H 1.08993 * 109.47269 * 63.20830 * 14 13 12 34 34 H 1.09004 * 109.50409 * 303.14075 * 14 13 12 35 35 H 1.09000 * 109.48784 * 181.65014 * 15 14 13 36 36 H 1.09005 * 109.48824 * 61.60562 * 15 14 13 37 37 H 1.08997 * 110.31797 * 331.13851 * 19 17 16 38 38 H 1.09006 * 110.31956 * 93.23141 * 19 17 16 39 39 H 1.08998 * 110.78406 * 141.47981 * 23 20 19 40 40 H 1.08998 * 110.78677 * 264.75006 * 23 20 19 41 41 H 0.96700 * 113.99543 * 180.02562 * 26 24 17 42 42 H 1.09003 * 109.48960 * 60.64679 * 27 16 15 43 43 H 1.08994 * 109.49228 * 180.68741 * 27 16 15 44 44 H 1.09000 * 109.48962 * 56.84351 * 28 13 12 45 45 H 1.09003 * 109.49105 * 296.78198 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0021 11 8 3.4472 -3.4210 0.0021 12 6 5.5607 -2.3706 0.0033 13 7 6.0503 -3.7556 0.0037 14 6 5.7044 -4.4368 -1.2517 15 6 6.1612 -5.8958 -1.1799 16 7 7.6103 -5.9420 -0.9406 17 6 8.1000 -7.3270 -0.9401 18 1 7.8268 -7.8125 -1.8770 19 6 7.4786 -8.0961 0.2427 20 16 8.7539 -9.3071 0.7457 21 8 9.1970 -9.0051 2.0616 22 8 8.3066 -10.6191 0.4332 23 6 10.0364 -8.7953 -0.4596 24 6 9.6308 -7.3345 -0.7839 25 1 9.9260 -6.6751 0.0323 26 8 10.2490 -6.9138 -2.0017 27 6 7.9559 -5.2609 0.3150 28 6 7.4995 -3.8018 0.2430 29 1 -0.4850 0.8401 -0.0004 30 1 3.8649 -0.3634 0.0014 31 1 5.9234 -1.8565 0.8933 32 1 5.9247 -1.8571 -0.8867 33 1 6.2031 -3.9402 -2.0840 34 1 4.6252 -4.4005 -1.4001 35 1 5.9319 -6.3954 -2.1212 36 1 5.6417 -6.3998 -0.3648 37 1 7.2592 -7.4141 1.0642 38 1 6.5710 -8.6097 -0.0747 39 1 11.0277 -8.8304 -0.0078 40 1 9.9980 -9.4182 -1.3532 41 1 11.2153 -6.8978 -1.9671 42 1 7.4568 -5.7573 1.1473 43 1 9.0350 -5.2979 0.4638 44 1 7.7288 -3.3022 1.1843 45 1 8.0190 -3.2981 -0.5722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001616497885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:56 Heat of formation + Delta-G solvation = -108.830236 kcal Electronic energy + Delta-G solvation = -29392.243438 eV Core-core repulsion = 25152.455187 eV Total energy + Delta-G solvation = -4239.788251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -40.25091 -38.73064 -37.56615 -37.48746 -36.48359 -35.64722 -33.95346 -32.79528 -31.68731 -30.98042 -29.89353 -28.25369 -25.95193 -24.67428 -23.90368 -23.12692 -21.21159 -19.76458 -19.39943 -19.18970 -18.37451 -18.16935 -17.45983 -16.77725 -16.26092 -16.20343 -15.99555 -15.45614 -15.06043 -15.04429 -14.85304 -14.64709 -14.33400 -13.96344 -13.85276 -13.73341 -13.46340 -13.24370 -12.97802 -12.72946 -12.58928 -12.50245 -12.48819 -12.23609 -11.95015 -11.82700 -11.62167 -11.42756 -11.20983 -11.18108 -11.09901 -10.83038 -10.62229 -10.57408 -10.50457 -9.99326 -9.55493 -8.69526 -8.54837 -8.20410 -7.98452 -6.32920 -3.84324 -0.51506 1.99707 2.99187 3.01129 3.05208 3.13749 3.24771 3.38388 3.65342 3.71452 3.85248 3.87985 4.08632 4.10301 4.23435 4.32957 4.39414 4.68561 4.72346 4.81708 4.98844 5.02249 5.14349 5.16160 5.20221 5.26263 5.39763 5.48459 5.51626 5.62944 5.72788 5.74686 5.82628 5.90036 6.09511 6.28775 6.63637 6.74045 7.05001 7.13572 7.26879 7.56655 8.12624 8.58232 8.93360 9.40613 9.81239 10.80154 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.002226 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.979883 B =12575.797927 C =13011.032644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.453 3.547 11 O -0.561 6.561 12 C 0.044 3.956 13 N -0.517 5.517 14 C 0.054 3.946 15 C 0.058 3.942 16 N -0.513 5.513 17 C 0.099 3.901 18 H 0.114 0.886 19 C -0.636 4.636 20 S 2.400 3.600 21 O -0.931 6.931 22 O -0.932 6.932 23 C -0.635 4.635 24 C 0.119 3.881 25 H 0.085 0.915 26 O -0.532 6.532 27 C 0.042 3.958 28 C 0.057 3.943 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.034 0.966 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.382 0.618 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.665 -12.696 -2.287 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.238 3.762 11 O -0.443 6.443 12 C -0.087 4.087 13 N -0.242 5.242 14 C -0.074 4.074 15 C -0.070 4.070 16 N -0.237 5.237 17 C -0.012 4.012 18 H 0.132 0.868 19 C -0.767 4.767 20 S 2.581 3.419 21 O -0.928 6.928 22 O -0.929 6.929 23 C -0.765 4.765 24 C 0.058 3.942 25 H 0.103 0.897 26 O -0.337 6.337 27 C -0.086 4.086 28 C -0.071 4.071 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.160 0.840 40 H 0.167 0.833 41 H 0.230 0.770 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 23.399 -13.927 -1.794 27.289 hybrid contribution 1.168 1.990 -0.337 2.332 sum 24.567 -11.937 -2.131 27.397 Atomic orbital electron populations 1.69621 1.05651 1.27507 1.49332 1.25043 0.95492 0.97993 0.97651 0.86670 0.79791 0.84053 0.78854 1.19664 1.20186 1.19484 1.19418 0.79205 0.96604 1.48084 0.86280 1.42219 1.07545 1.06165 1.67075 1.19638 0.88065 0.84525 0.83939 1.90517 1.69382 1.30785 1.53571 1.21866 0.95524 0.89671 1.01683 1.61740 1.11839 1.14901 1.35758 1.22357 1.03414 0.92352 0.89274 1.22249 0.85416 0.97842 1.01477 1.62339 1.15581 1.11675 1.34089 1.22055 0.91478 0.90404 0.97247 0.86793 1.31282 1.17687 1.17320 1.10451 1.08734 0.79320 0.76957 0.76889 1.93644 1.80282 1.85631 1.33244 1.93634 1.79899 1.33976 1.85406 1.31467 1.18013 1.08047 1.18933 1.22397 0.92515 0.89717 0.89549 0.89697 1.86599 1.24426 1.89354 1.33311 1.22409 1.00283 0.95012 0.90885 1.22139 0.88388 0.95380 1.01200 0.91607 0.79720 0.89206 0.93222 0.94803 0.87202 0.90115 0.92914 0.83261 0.83160 0.84027 0.83336 0.77022 0.93013 0.90111 0.90157 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.54 13.96 55.50 0.77 -24.76 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.14 27.74 -169.99 -4.71 14.42 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.32 6.52 56.52 0.37 -4.96 16 7 C -0.30 -8.48 10.16 -14.93 -0.15 -8.63 16 8 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 9 N -0.59 -13.78 5.09 -10.96 -0.06 -13.83 16 10 C 0.45 9.96 7.48 -10.98 -0.08 9.88 16 11 O -0.56 -14.42 13.92 5.55 0.08 -14.34 16 12 C 0.04 0.71 5.45 -4.98 -0.03 0.68 16 13 N -0.52 -7.84 4.44 -235.91 -1.05 -8.89 16 14 C 0.05 0.81 5.26 -3.76 -0.02 0.79 16 15 C 0.06 0.69 5.34 -3.77 -0.02 0.67 16 16 N -0.51 -5.16 4.71 -225.21 -1.06 -6.22 16 17 C 0.10 0.74 2.34 -66.65 -0.16 0.59 16 18 H 0.11 0.80 8.13 -51.93 -0.42 0.38 16 19 C -0.64 -4.34 5.53 37.76 0.21 -4.14 16 20 S 2.40 16.90 6.10 -107.50 -0.66 16.25 16 21 O -0.93 -9.74 18.14 -57.73 -1.05 -10.79 16 22 O -0.93 -9.92 18.15 -57.73 -1.05 -10.97 16 23 C -0.64 -2.57 7.00 38.24 0.27 -2.31 16 24 C 0.12 0.68 3.27 -25.19 -0.08 0.60 16 25 H 0.09 0.41 5.86 -51.93 -0.30 0.10 16 26 O -0.53 -3.40 13.38 -35.23 -0.47 -3.87 16 27 C 0.04 0.41 4.98 -3.77 -0.02 0.39 16 28 C 0.06 0.66 5.61 -3.77 -0.02 0.64 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 31 H 0.09 1.27 8.03 -51.93 -0.42 0.85 16 32 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.11 2.03 5.85 -51.93 -0.30 1.72 16 35 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 36 H 0.05 0.67 7.35 -51.93 -0.38 0.29 16 37 H 0.15 1.10 5.62 -51.93 -0.29 0.81 16 38 H 0.15 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.14 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.15 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.38 0.79 9.11 45.56 0.42 1.21 16 42 H 0.05 0.52 6.01 -51.93 -0.31 0.21 16 43 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 44 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 45 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -38.63 362.64 -9.48 -48.11 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.49 Total: 9.25 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.20 Total: 0.18 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -1.39 Total: -53.71 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -2.49 Total: -39.96 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.42 kcal Atomic # 16 Polarization: 16.90 SS G_CDS: -0.66 Total: 16.25 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.63 -9.48 -48.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001616497885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.720 kcal (2) G-P(sol) polarization free energy of solvation -38.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds