Wall clock time and date at job start Wed Apr 1 2020 04:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34235 * 116.99885 * 2 1 4 4 O 1.20828 * 119.99580 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00023 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.46974 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.47137 * 180.02562 * 6 5 3 8 8 C 1.36912 * 119.99635 * 270.00291 * 7 6 5 9 9 H 1.08002 * 120.00313 * 137.57783 * 8 7 6 10 10 C 1.39021 * 120.00166 * 317.56604 * 8 7 6 11 11 N 1.31381 * 119.99732 * 347.06644 * 10 8 7 12 12 Si 1.86801 * 120.00148 * 167.06070 * 10 8 7 13 13 H 1.48501 * 109.46918 * 90.00475 * 12 10 8 14 14 H 1.48497 * 109.47043 * 210.00617 * 12 10 8 15 15 H 1.48500 * 109.46759 * 330.00713 * 12 10 8 16 16 C 1.34778 * 120.00097 * 89.99715 * 7 6 5 17 17 O 1.21593 * 119.99971 * 4.45476 * 16 7 6 18 18 C 1.47654 * 119.99817 * 184.45222 * 16 7 6 19 19 C 1.41146 * 126.30568 * 174.35091 * 18 16 7 20 20 C 1.36991 * 105.42156 * 179.97438 * 19 18 16 21 21 C 1.47324 * 126.62861 * 179.97438 * 20 19 18 22 22 C 1.36149 * 125.94820 * 180.02562 * 21 20 19 23 23 C 1.40873 * 106.73100 * 179.97438 * 22 21 20 24 24 C 1.34764 * 107.05673 * 0.02562 * 23 22 21 25 25 C 1.50699 * 125.64852 * 179.97438 * 24 23 22 26 26 O 1.34330 * 108.70291 * 359.72763 * 24 23 22 27 27 N 1.36569 * 106.73927 * 0.02562 * 20 19 18 28 28 H 0.96996 * 125.02479 * 179.97438 * 27 20 19 29 29 N 1.28442 * 109.95555 * 0.26518 * 27 20 19 30 30 H 1.09000 * 109.46479 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47399 * 300.00245 * 1 2 3 32 32 H 1.09007 * 109.46801 * 60.00250 * 1 2 3 33 33 H 1.09008 * 109.46977 * 60.00255 * 5 3 2 34 34 H 1.08997 * 109.47372 * 300.00542 * 5 3 2 35 35 H 1.09000 * 109.47474 * 60.00358 * 6 5 3 36 36 H 1.09009 * 109.47272 * 300.00036 * 6 5 3 37 37 H 0.97000 * 120.00264 * 185.00863 * 11 10 8 38 38 H 1.07999 * 127.29239 * 0.02562 * 19 18 16 39 39 H 1.08005 * 126.63528 * 0.02562 * 22 21 20 40 40 H 1.07994 * 126.47135 * 180.02562 * 23 22 21 41 41 H 1.08998 * 109.47049 * 89.99766 * 25 24 23 42 42 H 1.08994 * 109.47152 * 209.99591 * 25 24 23 43 43 H 1.09001 * 109.47063 * 330.00025 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7421 0.0011 7 7 5.4630 2.8189 0.0011 8 6 6.1467 2.8543 1.1868 9 1 7.0465 2.2696 1.3090 10 6 5.6827 3.6429 2.2334 11 7 4.7492 4.5413 2.0151 12 14 6.3865 3.4253 3.9500 13 1 7.5575 4.3221 4.1222 14 1 5.3496 3.7662 4.9569 15 1 6.8117 2.0146 4.1354 16 6 6.1360 2.8546 -1.1662 17 8 5.5273 2.9049 -2.2176 18 6 7.6123 2.8326 -1.1681 19 6 8.4455 2.7527 -2.3046 20 6 9.7263 2.7632 -1.8189 21 6 10.9671 2.6975 -2.6104 22 6 12.2343 2.7085 -2.1125 23 6 13.1048 2.6288 -3.2173 24 6 12.3362 2.5743 -4.3230 25 6 12.8412 2.4821 -5.7398 26 8 11.0455 2.6103 -3.9526 27 7 9.6306 2.8453 -0.4590 28 1 10.3839 2.8705 0.1515 29 7 8.3956 2.8782 -0.1077 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 3.9564 0.7807 -0.8892 34 1 3.9557 0.7810 0.8907 35 1 3.6100 3.2361 0.8911 36 1 3.6106 3.2365 -0.8890 37 1 4.4769 5.1408 2.7274 38 1 8.1383 2.6960 -3.3385 39 1 12.5174 2.7661 -1.0718 40 1 14.1841 2.6143 -3.1843 41 1 12.9476 1.4342 -6.0202 42 1 12.1321 2.9674 -6.4105 43 1 13.8090 2.9781 -5.8136 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642947706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:05 Heat of formation + Delta-G solvation = -17.428560 kcal Electronic energy + Delta-G solvation = -29652.716030 eV Core-core repulsion = 25281.447302 eV Total energy + Delta-G solvation = -4371.268728 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.72501 -41.82624 -40.01208 -38.30304 -36.13948 -34.91839 -33.37537 -32.81050 -31.96515 -31.40572 -30.64567 -29.96115 -27.50511 -26.19108 -25.01099 -24.37325 -22.47560 -21.68337 -21.48946 -20.22688 -20.07556 -19.01760 -18.44684 -17.32486 -16.69385 -16.39562 -16.24461 -16.13149 -16.08879 -15.36870 -14.99480 -14.59992 -14.27205 -14.18927 -13.63216 -13.53849 -13.47205 -13.26557 -13.22175 -13.00600 -12.95939 -12.70780 -12.33472 -12.16062 -11.98310 -11.91978 -11.64402 -11.17279 -11.02916 -10.98349 -10.51261 -10.38732 -10.18054 -10.07538 -10.05200 -9.86737 -9.50327 -9.14358 -8.80943 -8.70184 -7.77778 -7.48586 -6.32021 -4.06282 1.11787 2.20379 2.39927 2.49723 2.70255 3.02426 3.08341 3.18388 3.23335 3.26071 3.46750 4.09746 4.36201 4.45573 4.62883 4.79279 4.83134 4.99957 5.09362 5.20464 5.25690 5.27780 5.33490 5.35787 5.42100 5.53261 5.65684 5.67496 5.79579 5.85125 5.92765 6.01757 6.15244 6.31018 6.31153 6.38857 6.74640 6.80032 6.95487 7.00628 7.30865 7.37572 7.65427 7.90996 8.21647 8.43386 8.47768 9.09917 9.44144 9.86113 10.70520 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011879 B = 0.002793 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.535863 B =10022.693186 C =11838.560429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.467 3.533 4 O -0.504 6.504 5 C -0.124 4.124 6 C 0.125 3.875 7 N -0.419 5.419 8 C -0.327 4.327 9 H 0.111 0.889 10 C 0.045 3.955 11 N -0.863 5.863 12 Si 0.919 3.081 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.268 1.268 16 C 0.544 3.456 17 O -0.594 6.594 18 C 0.025 3.975 19 C -0.149 4.149 20 C 0.046 3.954 21 C 0.075 3.925 22 C -0.205 4.205 23 C -0.205 4.205 24 C -0.013 4.013 25 C -0.073 4.073 26 O -0.160 6.160 27 N -0.386 5.386 28 H 0.440 0.560 29 N -0.196 5.196 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.069 0.931 37 H 0.271 0.729 38 H 0.161 0.839 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.841 -6.985 -6.045 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.310 3.690 4 O -0.391 6.391 5 C -0.163 4.163 6 C 0.001 3.999 7 N -0.136 5.136 8 C -0.456 4.456 9 H 0.129 0.871 10 C -0.161 4.161 11 N -0.500 5.500 12 Si 0.746 3.254 13 H -0.203 1.203 14 H -0.210 1.210 15 H -0.193 1.193 16 C 0.332 3.668 17 O -0.478 6.478 18 C -0.135 4.135 19 C -0.177 4.177 20 C -0.077 4.077 21 C 0.023 3.977 22 C -0.226 4.226 23 C -0.224 4.224 24 C -0.064 4.064 25 C -0.129 4.129 26 O -0.055 6.055 27 N -0.102 5.102 28 H 0.284 0.716 29 N -0.030 5.030 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.178 0.822 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.783 -6.493 -5.495 12.964 hybrid contribution 0.811 0.085 0.630 1.031 sum 10.595 -6.408 -4.865 13.303 Atomic orbital electron populations 1.23165 0.77400 1.02991 1.02340 1.86541 1.22718 1.34433 1.84693 1.24045 0.92351 0.80883 0.71762 1.90655 1.67242 1.36209 1.44984 1.21893 0.85893 1.03246 1.05286 1.21287 0.81716 0.91014 1.05887 1.43271 1.04588 1.61003 1.04734 1.19876 1.09967 1.27306 0.88440 0.87147 1.25512 0.96028 0.94302 1.00299 1.69768 1.28998 1.17238 1.33965 0.86054 0.78556 0.78969 0.81842 1.20297 1.20965 1.19257 1.17239 0.83692 0.81347 0.84568 1.90647 1.68186 1.56970 1.32030 1.22000 0.95479 1.07321 0.88673 1.21817 0.89427 1.06155 1.00347 1.18221 0.91228 1.13434 0.84808 1.18945 0.92129 1.06234 0.80435 1.21679 0.91105 1.09430 1.00366 1.21407 1.00502 1.09267 0.91262 1.22538 0.80361 1.05965 0.97566 1.20313 1.01277 1.03506 0.87830 1.84038 1.28347 1.71174 1.21940 1.43932 1.07563 1.54758 1.03970 0.71607 1.74431 0.87702 1.16070 1.24840 0.88660 0.92162 0.92181 0.88503 0.87579 0.86151 0.91278 0.91839 0.82183 0.83424 0.83256 0.90027 0.90354 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.02 10.57 -39.27 -0.41 -6.44 16 3 C 0.47 9.02 7.96 36.00 0.29 9.31 16 4 O -0.50 -11.05 15.73 -18.75 -0.29 -11.34 16 5 C -0.12 -2.48 6.13 -27.89 -0.17 -2.65 16 6 C 0.12 3.02 4.31 -4.04 -0.02 3.00 16 7 N -0.42 -10.57 2.49 -115.95 -0.29 -10.85 16 8 C -0.33 -8.17 7.95 -14.99 -0.12 -8.29 16 9 H 0.11 2.68 5.90 -52.49 -0.31 2.38 16 10 C 0.04 1.12 5.12 -17.45 -0.09 1.04 16 11 N -0.86 -23.08 11.29 55.50 0.63 -22.45 16 12 Si 0.92 19.51 29.58 -169.99 -5.03 14.48 16 13 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 16 C 0.54 13.72 7.64 -12.42 -0.09 13.62 16 17 O -0.59 -15.93 16.47 5.28 0.09 -15.84 16 18 C 0.02 0.55 6.84 -82.89 -0.57 -0.01 16 19 C -0.15 -2.87 10.77 -38.93 -0.42 -3.29 16 20 C 0.05 0.76 7.10 -82.51 -0.59 0.18 16 21 C 0.07 1.07 7.17 -36.64 -0.26 0.81 16 22 C -0.21 -2.41 10.84 -39.34 -0.43 -2.84 16 23 C -0.21 -2.14 10.78 -39.82 -0.43 -2.56 16 24 C -0.01 -0.15 7.31 -35.54 -0.26 -0.41 16 25 C -0.07 -0.49 10.41 36.01 0.37 -0.11 16 26 O -0.16 -2.27 10.67 4.45 0.05 -2.22 16 27 N -0.39 -6.15 6.90 33.25 0.23 -5.92 16 28 H 0.44 5.15 8.96 -190.46 -1.71 3.44 16 29 N -0.20 -3.99 8.96 33.35 0.30 -3.69 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 34 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 35 H 0.12 3.16 5.51 -51.93 -0.29 2.88 16 36 H 0.07 1.78 7.32 -51.92 -0.38 1.40 16 37 H 0.27 6.90 8.32 -40.82 -0.34 6.56 16 38 H 0.16 2.94 8.06 -52.49 -0.42 2.52 16 39 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -33.30 380.18 -7.19 -40.49 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.47 Total: 8.76 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -1.71 Total: 9.29 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.87 Total: -42.91 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.58 Total: -35.84 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.30 -7.19 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642947706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.064 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds