Wall clock time and date at job start Wed Apr 1 2020 04:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34235 * 116.99885 * 2 1 4 4 O 1.20828 * 119.99580 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00023 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.46974 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.47137 * 180.02562 * 6 5 3 8 8 C 1.36912 * 119.99635 * 270.00291 * 7 6 5 9 9 H 1.08002 * 120.00313 * 137.57783 * 8 7 6 10 10 C 1.39021 * 120.00166 * 317.56604 * 8 7 6 11 11 N 1.31381 * 119.99732 * 347.06644 * 10 8 7 12 12 Si 1.86801 * 120.00148 * 167.06070 * 10 8 7 13 13 H 1.48501 * 109.46918 * 90.00475 * 12 10 8 14 14 H 1.48497 * 109.47043 * 210.00617 * 12 10 8 15 15 H 1.48500 * 109.46759 * 330.00713 * 12 10 8 16 16 C 1.34778 * 120.00097 * 89.99715 * 7 6 5 17 17 O 1.21593 * 119.99971 * 4.45476 * 16 7 6 18 18 C 1.47654 * 119.99817 * 184.45222 * 16 7 6 19 19 C 1.41146 * 126.30568 * 174.35091 * 18 16 7 20 20 C 1.36991 * 105.42156 * 179.97438 * 19 18 16 21 21 C 1.47324 * 126.62861 * 179.97438 * 20 19 18 22 22 C 1.36149 * 125.94820 * 180.02562 * 21 20 19 23 23 C 1.40873 * 106.73100 * 179.97438 * 22 21 20 24 24 C 1.34764 * 107.05673 * 0.02562 * 23 22 21 25 25 C 1.50699 * 125.64852 * 179.97438 * 24 23 22 26 26 O 1.34330 * 108.70291 * 359.72763 * 24 23 22 27 27 N 1.36569 * 106.73927 * 0.02562 * 20 19 18 28 28 H 0.96996 * 125.02479 * 179.97438 * 27 20 19 29 29 N 1.28442 * 109.95555 * 0.26518 * 27 20 19 30 30 H 1.09000 * 109.46479 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47399 * 300.00245 * 1 2 3 32 32 H 1.09007 * 109.46801 * 60.00250 * 1 2 3 33 33 H 1.09008 * 109.46977 * 60.00255 * 5 3 2 34 34 H 1.08997 * 109.47372 * 300.00542 * 5 3 2 35 35 H 1.09000 * 109.47474 * 60.00358 * 6 5 3 36 36 H 1.09009 * 109.47272 * 300.00036 * 6 5 3 37 37 H 0.97000 * 120.00264 * 185.00863 * 11 10 8 38 38 H 1.07999 * 127.29239 * 0.02562 * 19 18 16 39 39 H 1.08005 * 126.63528 * 0.02562 * 22 21 20 40 40 H 1.07994 * 126.47135 * 180.02562 * 23 22 21 41 41 H 1.08998 * 109.47049 * 89.99766 * 25 24 23 42 42 H 1.08994 * 109.47152 * 209.99591 * 25 24 23 43 43 H 1.09001 * 109.47063 * 330.00025 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7421 0.0011 7 7 5.4630 2.8189 0.0011 8 6 6.1467 2.8543 1.1868 9 1 7.0465 2.2696 1.3090 10 6 5.6827 3.6429 2.2334 11 7 4.7492 4.5413 2.0151 12 14 6.3865 3.4253 3.9500 13 1 7.5575 4.3221 4.1222 14 1 5.3496 3.7662 4.9569 15 1 6.8117 2.0146 4.1354 16 6 6.1360 2.8546 -1.1662 17 8 5.5273 2.9049 -2.2176 18 6 7.6123 2.8326 -1.1681 19 6 8.4455 2.7527 -2.3046 20 6 9.7263 2.7632 -1.8189 21 6 10.9671 2.6975 -2.6104 22 6 12.2343 2.7085 -2.1125 23 6 13.1048 2.6288 -3.2173 24 6 12.3362 2.5743 -4.3230 25 6 12.8412 2.4821 -5.7398 26 8 11.0455 2.6103 -3.9526 27 7 9.6306 2.8453 -0.4590 28 1 10.3839 2.8705 0.1515 29 7 8.3956 2.8782 -0.1077 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 3.9564 0.7807 -0.8892 34 1 3.9557 0.7810 0.8907 35 1 3.6100 3.2361 0.8911 36 1 3.6106 3.2365 -0.8890 37 1 4.4769 5.1408 2.7274 38 1 8.1383 2.6960 -3.3385 39 1 12.5174 2.7661 -1.0718 40 1 14.1841 2.6143 -3.1843 41 1 12.9476 1.4342 -6.0202 42 1 12.1321 2.9674 -6.4105 43 1 13.8090 2.9781 -5.8136 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642947706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:04 Heat of formation + Delta-G solvation = -38.477452 kcal Electronic energy + Delta-G solvation = -29653.628778 eV Core-core repulsion = 25281.447302 eV Total energy + Delta-G solvation = -4372.181477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.79132 -43.16620 -41.54274 -40.19417 -37.64345 -36.84297 -34.30309 -33.88056 -33.80783 -32.98839 -32.16951 -31.17694 -28.73483 -27.14521 -26.92786 -26.03133 -23.87452 -22.85549 -22.73979 -21.65574 -21.27837 -20.86937 -19.71356 -18.89220 -18.35639 -17.85568 -17.63382 -17.53802 -17.37698 -16.69961 -16.42412 -16.17961 -16.13882 -15.43741 -15.26789 -14.98440 -14.81427 -14.62104 -14.22705 -13.97131 -13.84180 -13.78721 -13.75219 -13.64194 -13.44132 -13.10551 -12.88996 -12.79696 -12.71744 -12.67882 -12.08337 -11.94284 -11.78090 -11.68976 -11.51921 -11.21331 -11.07365 -10.64708 -10.58394 -10.33933 -9.44262 -8.87793 -8.23398 -6.04468 0.01042 0.77950 1.14018 1.30238 1.34276 1.47936 1.51196 1.61989 1.68824 1.87909 2.27727 2.37392 2.60346 2.89351 3.14067 3.48442 3.66446 3.84075 3.89911 3.99649 4.12359 4.23132 4.28459 4.32643 4.33145 4.52801 4.58374 4.60532 4.65450 4.70552 4.75519 4.80411 4.86752 4.98285 5.01428 5.20000 5.27564 5.28587 5.42105 5.58494 5.66789 5.98496 6.01916 6.15512 6.54409 6.70921 6.91185 7.18167 7.51761 7.92826 8.80071 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011879 B = 0.002793 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.535863 B =10022.693186 C =11838.560429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.475 3.525 4 O -0.536 6.536 5 C -0.114 4.114 6 C 0.130 3.870 7 N -0.428 5.428 8 C -0.332 4.332 9 H 0.119 0.881 10 C 0.001 3.999 11 N -0.903 5.903 12 Si 0.986 3.014 13 H -0.273 1.273 14 H -0.287 1.287 15 H -0.253 1.253 16 C 0.531 3.469 17 O -0.625 6.625 18 C -0.004 4.004 19 C -0.180 4.180 20 C 0.083 3.917 21 C 0.023 3.977 22 C -0.177 4.177 23 C -0.213 4.213 24 C -0.010 4.010 25 C -0.075 4.075 26 O -0.185 6.185 27 N -0.361 5.361 28 H 0.460 0.540 29 N -0.214 5.214 30 H 0.139 0.861 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.039 0.961 37 H 0.270 0.730 38 H 0.156 0.844 39 H 0.175 0.825 40 H 0.183 0.817 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.233 -8.568 -5.533 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.426 6.426 5 C -0.153 4.153 6 C 0.006 3.994 7 N -0.145 5.145 8 C -0.461 4.461 9 H 0.136 0.864 10 C -0.201 4.201 11 N -0.541 5.541 12 Si 0.810 3.190 13 H -0.198 1.198 14 H -0.213 1.213 15 H -0.176 1.176 16 C 0.320 3.680 17 O -0.511 6.511 18 C -0.162 4.162 19 C -0.208 4.208 20 C -0.042 4.042 21 C -0.028 4.028 22 C -0.198 4.198 23 C -0.231 4.231 24 C -0.061 4.061 25 C -0.131 4.131 26 O -0.082 6.082 27 N -0.081 5.081 28 H 0.309 0.691 29 N -0.050 5.050 30 H 0.157 0.843 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.138 0.862 35 H 0.117 0.883 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.174 0.826 39 H 0.193 0.807 40 H 0.201 0.799 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.185 -8.112 -4.956 16.255 hybrid contribution -0.062 0.543 0.297 0.622 sum 13.123 -7.569 -4.660 15.850 Atomic orbital electron populations 1.23589 0.74746 1.05887 1.02461 1.86507 1.25170 1.32262 1.83871 1.23749 0.91966 0.81310 0.71072 1.90645 1.67796 1.37483 1.46667 1.21643 0.87016 1.00354 1.06244 1.21053 0.81643 0.93427 1.03231 1.43484 1.04858 1.61045 1.05095 1.20159 1.10250 1.27384 0.88261 0.86359 1.26374 0.96201 0.93657 1.03909 1.69921 1.30673 1.18420 1.35054 0.85030 0.77644 0.79619 0.76732 1.19818 1.21298 1.17611 1.17734 0.85280 0.80794 0.84154 1.90592 1.69342 1.58315 1.32893 1.21634 0.94216 1.09989 0.90387 1.21799 0.90420 1.08855 0.99753 1.18275 0.91334 1.09800 0.84773 1.18791 0.91907 1.11206 0.80878 1.22165 0.90028 1.05418 1.02168 1.21854 1.02042 1.08958 0.90268 1.23517 0.79336 1.03493 0.99747 1.20573 1.02339 1.04897 0.85314 1.84025 1.30350 1.71764 1.22032 1.43828 1.07004 1.52817 1.04403 0.69119 1.74239 0.89074 1.17059 1.24662 0.84346 0.92089 0.92146 0.87852 0.86157 0.88254 0.94249 0.92005 0.82584 0.80709 0.79922 0.88474 0.90383 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.61 10.57 -51.46 -0.54 -12.15 16 3 C 0.48 18.77 7.96 71.23 0.57 19.34 16 4 O -0.54 -24.42 15.73 21.96 0.35 -24.07 16 5 C -0.11 -4.72 6.13 29.85 0.18 -4.53 16 6 C 0.13 6.69 4.31 86.38 0.37 7.07 16 7 N -0.43 -22.65 2.49 -639.01 -1.59 -24.24 16 8 C -0.33 -16.99 7.95 84.09 0.67 -16.33 16 9 H 0.12 5.79 5.90 -2.91 -0.02 5.77 16 10 C 0.00 0.04 5.12 84.95 0.44 0.47 16 11 N -0.90 -50.09 11.29 21.68 0.24 -49.85 16 12 Si 0.99 39.95 29.58 68.60 2.03 41.98 16 13 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 14 H -0.29 -11.69 7.11 99.48 0.71 -10.98 16 15 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 16 C 0.53 28.34 7.64 86.73 0.66 29.00 16 17 O -0.62 -35.76 16.47 -4.01 -0.07 -35.83 16 18 C 0.00 -0.18 6.84 42.33 0.29 0.11 16 19 C -0.18 -7.21 10.77 22.69 0.24 -6.97 16 20 C 0.08 2.70 7.10 40.51 0.29 2.99 16 21 C 0.02 0.63 7.17 24.18 0.17 0.80 16 22 C -0.18 -3.55 10.84 22.43 0.24 -3.30 16 23 C -0.21 -3.56 10.78 22.12 0.24 -3.32 16 24 C -0.01 -0.20 7.31 24.89 0.18 -0.01 16 25 C -0.08 -0.77 10.41 71.24 0.74 -0.02 16 26 O -0.19 -5.06 10.67 -6.98 -0.07 -5.13 16 27 N -0.36 -11.11 6.90 -48.73 -0.34 -11.45 16 28 H 0.46 9.65 8.96 -220.01 -1.97 7.68 16 29 N -0.21 -8.78 8.96 -48.40 -0.43 -9.22 16 30 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 32 H 0.06 1.44 8.13 -2.38 -0.02 1.42 16 33 H 0.10 4.13 8.14 -2.38 -0.02 4.11 16 34 H 0.12 4.60 8.14 -2.39 -0.02 4.58 16 35 H 0.10 5.54 5.51 -2.39 -0.01 5.53 16 36 H 0.04 2.19 7.32 -2.38 -0.02 2.18 16 37 H 0.27 14.25 8.32 -92.71 -0.77 13.48 16 38 H 0.16 6.16 8.06 -2.91 -0.02 6.13 16 39 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 40 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -77.33 380.18 5.16 -72.17 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: -0.90 Total: 30.69 kcal Atomic # 6 Polarization: 20.61 SS G_CDS: 6.48 Total: 27.10 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -2.11 Total: -94.76 kcal Atomic # 8 Polarization: -76.84 SS G_CDS: -0.34 Total: -77.18 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -77.33 5.16 -72.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642947706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.692 kcal (2) G-P(sol) polarization free energy of solvation -77.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds