Wall clock time and date at job start Wed Apr 1 2020 04:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30015 * 127.33206 * 2 1 4 4 O 1.20654 * 112.30111 * 180.26853 * 3 2 1 5 5 C 1.33500 * 113.15626 * 359.73651 * 4 3 2 6 6 C 1.50694 * 126.83192 * 179.97438 * 5 4 3 7 7 F 1.39900 * 109.47441 * 270.00341 * 6 5 4 8 8 F 1.39902 * 109.46901 * 30.00367 * 6 5 4 9 9 F 1.39903 * 109.47162 * 149.99861 * 6 5 4 10 10 C 1.37359 * 106.34112 * 359.97438 * 5 4 3 11 11 C 1.47398 * 128.56817 * 179.97438 * 10 5 4 12 12 O 1.21604 * 119.99857 * 89.99779 * 11 10 5 13 13 N 1.34779 * 119.99899 * 270.00027 * 11 10 5 14 14 C 1.46499 * 119.99872 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46840 * 180.02562 * 14 13 11 16 16 H 1.08991 * 109.47625 * 64.99762 * 15 14 13 17 17 N 1.46504 * 109.47054 * 304.99499 * 15 14 13 18 18 C 1.36929 * 119.99940 * 155.00291 * 17 15 14 19 19 H 1.08007 * 120.00260 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00410 * 180.02562 * 18 17 15 21 21 N 1.31625 * 119.99828 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00548 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47186 * 59.99665 * 22 20 18 24 24 H 1.48502 * 109.47374 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47097 * 300.00036 * 22 20 18 26 26 C 1.53006 * 109.46846 * 185.00008 * 15 14 13 27 27 C 1.52995 * 117.49555 * 248.74420 * 26 15 14 28 28 C 1.52995 * 117.49792 * 180.08660 * 26 15 14 29 29 H 1.08998 * 109.47243 * 270.15192 * 1 2 3 30 30 H 1.09004 * 109.47105 * 30.14783 * 1 2 3 31 31 H 1.08998 * 109.47089 * 150.14497 * 1 2 3 32 32 H 0.97000 * 119.99708 * 359.97438 * 13 11 10 33 33 H 1.09002 * 109.47391 * 59.99686 * 14 13 11 34 34 H 1.09001 * 109.46813 * 299.99742 * 14 13 11 35 35 H 0.96996 * 120.00090 * 335.00419 * 17 15 14 36 36 H 0.96994 * 120.00251 * 180.02562 * 21 20 18 37 37 H 1.08997 * 115.54853 * 34.41146 * 26 15 14 38 38 H 1.08998 * 117.49984 * 359.97438 * 27 26 15 39 39 H 1.09006 * 117.49830 * 145.02021 * 27 26 15 40 40 H 1.09000 * 117.49832 * 214.98051 * 28 26 15 41 41 H 1.09001 * 117.49910 * 359.97438 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7209 -0.0052 5 6 3.6495 -0.6007 -0.0040 6 6 4.9712 -1.3245 -0.0099 7 9 5.3732 -1.5507 -1.3307 8 9 5.9323 -0.5455 0.6432 9 9 4.8351 -2.5493 0.6524 10 6 2.3992 -1.1696 0.0036 11 6 2.0401 -2.5992 0.0074 12 8 1.8979 -3.1875 1.0621 13 7 1.8695 -3.2542 -1.1581 14 6 1.5131 -4.6752 -1.1543 15 6 1.3814 -5.1717 -2.5955 16 1 2.3522 -5.1192 -3.0881 17 7 0.4221 -4.3308 -3.3159 18 6 0.4966 -4.2206 -4.6788 19 1 1.2629 -4.7532 -5.2226 20 6 -0.4119 -3.4235 -5.3614 21 7 -1.3454 -2.7739 -4.6987 22 14 -0.3107 -3.2736 -7.2206 23 1 -0.4778 -4.6151 -7.8352 24 1 -1.3862 -2.3708 -7.7038 25 1 1.0122 -2.7162 -7.6010 26 6 0.8885 -6.6202 -2.5928 27 6 1.8691 -7.7008 -3.0525 28 6 0.6935 -7.3025 -3.9482 29 1 -0.3633 0.0027 1.0276 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3633 -0.8913 -0.5116 32 1 1.9826 -2.7847 -1.9993 33 1 0.5645 -4.8105 -0.6348 34 1 2.2910 -5.2434 -0.6443 35 1 -0.2658 -3.8522 -2.8276 36 1 -1.9805 -2.2172 -5.1757 37 1 0.1928 -6.8785 -1.7945 38 1 2.8652 -7.3799 -3.3573 39 1 1.8182 -8.6704 -2.5569 40 1 -0.1304 -8.0101 -4.0416 41 1 0.9159 -6.7194 -4.8419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661172680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:14 Heat of formation + Delta-G solvation = -81.315582 kcal Electronic energy + Delta-G solvation = -31590.044761 eV Core-core repulsion = 26674.148943 eV Total energy + Delta-G solvation = -4915.895818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.57120 -48.09070 -48.05899 -45.35811 -39.61481 -37.64598 -34.95714 -34.83759 -33.55241 -33.23412 -31.04345 -29.08708 -28.38199 -26.97212 -25.00588 -23.59398 -22.39346 -21.75452 -21.48226 -20.67527 -19.79681 -19.11066 -18.91056 -18.73036 -17.95472 -17.79713 -17.17036 -16.12844 -15.86809 -15.26941 -14.95197 -14.87727 -14.81102 -14.47539 -14.42877 -14.20474 -14.16557 -14.13515 -13.82984 -13.63826 -13.51348 -13.29687 -13.17819 -13.04331 -12.55908 -12.22765 -11.66885 -11.48028 -11.26217 -10.95035 -10.91815 -10.81495 -10.50463 -10.29461 -10.22659 -10.11087 -9.99940 -9.61549 -9.39056 -9.06400 -8.93725 -7.14760 -5.90500 -3.20220 0.48632 1.44640 1.53126 2.25589 2.66515 3.06334 3.20251 3.34714 3.40152 3.41356 3.77167 3.85214 3.95525 4.16582 4.34271 4.52372 4.56903 4.75545 5.10429 5.20018 5.37272 5.38162 5.42847 5.49109 5.52800 5.63501 5.78360 5.88169 5.91646 5.96399 6.10053 6.24486 6.41462 6.50332 6.63561 6.70714 6.90124 7.53966 7.57166 7.67094 8.12357 8.26465 9.39011 9.91095 10.27389 11.31187 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010060 B = 0.003866 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.625465 B = 7240.207041 C = 8270.485917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.066 3.934 3 N -0.328 5.328 4 O 0.136 5.864 5 C -0.104 4.104 6 C 0.564 3.436 7 F -0.154 7.154 8 F -0.160 7.160 9 F -0.147 7.147 10 C -0.156 4.156 11 C 0.583 3.417 12 O -0.519 6.519 13 N -0.693 5.693 14 C 0.117 3.883 15 C 0.192 3.808 16 H 0.057 0.943 17 N -0.717 5.717 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.007 4.007 21 N -0.929 5.929 22 Si 0.903 3.097 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.160 4.160 27 C -0.196 4.196 28 C -0.155 4.155 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.415 0.585 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.382 1.906 9.695 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 N -0.029 5.029 4 O 0.067 5.933 5 C -0.169 4.169 6 C 0.508 3.492 7 F -0.135 7.135 8 F -0.141 7.141 9 F -0.128 7.128 10 C -0.163 4.163 11 C 0.365 3.635 12 O -0.396 6.396 13 N -0.344 5.344 14 C -0.006 4.006 15 C 0.082 3.918 16 H 0.075 0.925 17 N -0.358 5.358 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.203 4.203 21 N -0.577 5.577 22 Si 0.734 3.266 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.182 4.182 27 C -0.234 4.234 28 C -0.192 4.192 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.252 0.748 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.102 2.789 10.240 13.981 hybrid contribution -0.184 -0.407 -1.357 1.429 sum 8.918 2.382 8.882 12.810 Atomic orbital electron populations 1.20381 0.83623 1.05678 1.04292 1.24949 0.99286 0.85159 1.00097 1.73627 0.88662 1.22829 1.17770 1.84643 1.21936 1.19738 1.67007 1.24129 0.95026 0.86867 1.10925 1.16514 0.80593 0.76972 0.75100 1.93332 1.90953 1.94587 1.34605 1.93280 1.65250 1.74426 1.81146 1.93349 1.95557 1.43335 1.80554 1.22354 0.91345 0.97009 1.05591 1.16772 0.78532 0.83226 0.84965 1.90847 1.50695 1.67111 1.30942 1.45947 1.68130 1.12180 1.08171 1.21764 1.00818 0.79204 0.98858 1.20070 0.94228 0.88204 0.89333 0.92468 1.42435 1.35307 1.53580 1.04437 1.19100 1.11683 1.23259 0.83002 0.91136 1.24701 0.97986 0.99978 0.97681 1.69632 1.19429 1.34062 1.34535 0.86348 0.77039 0.77506 0.85753 1.21212 1.21732 1.21270 1.23002 1.01900 0.94655 0.98598 1.22971 0.95293 0.99096 1.06000 1.22780 0.98488 1.02252 0.95689 0.89144 0.89151 0.88443 0.74829 0.91105 0.90948 0.78082 0.93391 0.89049 0.89488 0.90024 0.90186 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.49 36.01 0.38 -0.57 16 2 C 0.07 0.90 7.59 -79.76 -0.61 0.29 16 3 N -0.33 -4.54 12.01 34.78 0.42 -4.12 16 4 O 0.14 1.79 11.06 18.63 0.21 1.99 16 5 C -0.10 -1.37 6.85 -34.63 -0.24 -1.60 16 6 C 0.56 6.75 3.52 36.00 0.13 6.88 16 7 F -0.15 -1.84 17.30 2.25 0.04 -1.80 16 8 F -0.16 -1.76 17.30 2.25 0.04 -1.72 16 9 F -0.15 -1.91 16.09 2.25 0.04 -1.88 16 10 C -0.16 -2.24 6.19 -102.89 -0.64 -2.87 16 11 C 0.58 9.20 6.59 -12.53 -0.08 9.11 16 12 O -0.52 -9.44 17.11 5.27 0.09 -9.35 16 13 N -0.69 -10.69 5.38 -61.39 -0.33 -11.02 16 14 C 0.12 1.81 5.22 -4.04 -0.02 1.78 16 15 C 0.19 3.29 2.70 -67.92 -0.18 3.10 16 16 H 0.06 1.00 7.84 -51.93 -0.41 0.59 16 17 N -0.72 -15.25 4.54 -53.42 -0.24 -15.49 16 18 C -0.24 -5.80 8.63 -15.06 -0.13 -5.93 16 19 H 0.07 1.68 6.91 -52.48 -0.36 1.32 16 20 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 21 N -0.93 -25.52 13.06 55.49 0.72 -24.79 16 22 Si 0.90 20.90 29.55 -169.99 -5.02 15.88 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 26 C -0.16 -2.58 5.36 -90.62 -0.49 -3.07 16 27 C -0.20 -2.78 10.18 -26.70 -0.27 -3.06 16 28 C -0.15 -2.60 9.78 -26.70 -0.26 -2.86 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.41 6.61 8.12 -40.82 -0.33 6.28 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.39 8.92 7.80 -40.82 -0.32 8.60 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.09 1.44 8.11 -51.93 -0.42 1.01 16 38 H 0.09 1.19 8.05 -51.93 -0.42 0.78 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.10 1.99 6.23 -51.93 -0.32 1.66 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -27.59 371.68 -5.62 -33.21 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -4.68 Total: 12.55 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -2.51 Total: 0.95 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.57 Total: -55.43 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.30 Total: -7.35 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.11 Total: -5.40 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.59 -5.62 -33.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661172680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.104 kcal (2) G-P(sol) polarization free energy of solvation -27.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds