Wall clock time and date at job start Wed Apr 1 2020 04:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30012 * 127.33505 * 2 1 4 4 O 1.20659 * 112.30321 * 180.27120 * 3 2 1 5 5 C 1.33492 * 113.15707 * 359.73617 * 4 3 2 6 6 C 1.50701 * 126.82902 * 179.97438 * 5 4 3 7 7 F 1.39905 * 109.46901 * 269.99346 * 6 5 4 8 8 F 1.39889 * 109.47348 * 29.99883 * 6 5 4 9 9 F 1.39902 * 109.46944 * 150.00225 * 6 5 4 10 10 C 1.37363 * 106.34141 * 359.97438 * 5 4 3 11 11 C 1.47393 * 128.56786 * 179.97438 * 10 5 4 12 12 O 1.21603 * 120.00319 * 89.99880 * 11 10 5 13 13 N 1.34783 * 120.00100 * 270.00311 * 11 10 5 14 14 C 1.46496 * 120.00198 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.46653 * 35.00100 * 14 13 11 16 16 C 1.52997 * 109.47035 * 154.99692 * 14 13 11 17 17 N 1.46497 * 109.47371 * 305.00232 * 16 14 13 18 18 C 1.36938 * 120.00225 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99654 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00185 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00080 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99940 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47532 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47461 * 119.99572 * 22 20 18 25 25 H 1.48509 * 109.47144 * 239.99299 * 22 20 18 26 26 C 1.52996 * 109.47477 * 275.00153 * 14 13 11 27 27 C 1.53002 * 117.49888 * 356.25271 * 26 14 13 28 28 C 1.53000 * 117.50107 * 64.91033 * 26 14 13 29 29 H 1.09003 * 109.47466 * 270.14336 * 1 2 3 30 30 H 1.08996 * 109.47714 * 30.14830 * 1 2 3 31 31 H 1.09004 * 109.47050 * 150.15037 * 1 2 3 32 32 H 0.97000 * 119.99550 * 359.97438 * 13 11 10 33 33 H 1.08995 * 109.47084 * 65.00455 * 16 14 13 34 34 H 1.09003 * 109.47102 * 185.00047 * 16 14 13 35 35 H 0.96997 * 120.00193 * 0.02562 * 17 16 14 36 36 H 0.96996 * 120.00274 * 180.02562 * 21 20 18 37 37 H 1.09002 * 115.54951 * 210.58245 * 26 14 13 38 38 H 1.09000 * 117.49996 * 215.00804 * 27 26 14 39 39 H 1.08999 * 117.49664 * 0.02562 * 27 26 14 40 40 H 1.09008 * 117.49673 * 359.97438 * 28 26 14 41 41 H 1.08999 * 117.49942 * 144.97366 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0337 0.0000 4 8 3.4607 0.7208 -0.0053 5 6 3.6494 -0.6007 -0.0041 6 6 4.9712 -1.3245 -0.0101 7 9 5.3730 -1.5507 -1.3310 8 9 5.9324 -0.5456 0.6429 9 9 4.8352 -2.5493 0.6521 10 6 2.3992 -1.1696 0.0035 11 6 2.0401 -2.5991 0.0073 12 8 1.8978 -3.1876 1.0619 13 7 1.8694 -3.2542 -1.1582 14 6 1.5131 -4.6752 -1.1545 15 1 0.8578 -4.8831 -0.3086 16 6 0.7902 -5.0231 -2.4572 17 7 -0.3603 -4.1327 -2.6301 18 6 -1.1628 -4.2571 -3.7327 19 1 -0.9472 -5.0113 -4.4751 20 6 -2.2526 -3.4132 -3.8968 21 7 -2.5150 -2.4937 -2.9923 22 14 -3.3476 -3.5833 -5.4006 23 1 -2.8421 -4.6846 -6.2591 24 1 -4.7358 -3.8881 -4.9702 25 1 -3.3353 -2.3122 -6.1683 26 6 2.7835 -5.5193 -1.0350 27 6 4.1241 -4.7820 -1.0345 28 6 3.5907 -5.4019 0.2594 29 1 -0.3634 0.0026 1.0277 30 1 -0.3634 0.8886 -0.5161 31 1 -0.3633 -0.8914 -0.5115 32 1 1.9826 -2.7847 -1.9994 33 1 1.4744 -4.8996 -3.2966 34 1 0.4468 -6.0568 -2.4174 35 1 -0.5533 -3.4546 -1.9639 36 1 -3.2767 -1.9042 -3.1068 37 1 2.7463 -6.4958 -1.5181 38 1 4.9689 -5.2733 -1.5173 39 1 4.1010 -3.6956 -1.1189 40 1 3.2168 -4.7228 1.0258 41 1 4.0841 -6.3011 0.6282 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670527862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:37 Heat of formation + Delta-G solvation = -73.290523 kcal Electronic energy + Delta-G solvation = -32597.250326 eV Core-core repulsion = 27681.702501 eV Total energy + Delta-G solvation = -4915.547825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.63179 -48.13540 -48.11295 -45.35424 -40.17169 -37.31986 -35.05059 -34.88707 -33.57977 -33.12262 -31.24533 -28.98999 -28.44381 -26.98961 -24.87132 -24.02993 -22.30580 -21.67603 -21.56801 -21.05516 -19.90434 -19.16231 -18.99003 -18.75694 -17.96585 -17.71681 -17.23815 -16.34419 -15.95379 -15.80557 -14.96139 -14.91167 -14.84057 -14.49050 -14.41680 -14.21981 -14.17088 -13.98016 -13.69248 -13.60442 -13.42068 -13.32019 -13.06258 -12.85621 -12.51437 -12.26048 -11.76538 -11.62346 -11.47491 -11.25449 -10.97435 -10.90506 -10.53160 -10.28493 -10.22651 -10.14831 -9.99980 -9.87871 -9.66978 -9.02515 -8.91719 -7.06439 -5.88500 -3.17671 0.46879 1.42356 1.55708 2.21608 2.63497 2.99911 3.17733 3.36485 3.43100 3.44635 3.78177 3.81419 3.89991 4.01854 4.17732 4.47644 4.55163 4.69843 4.84558 5.10888 5.13950 5.27025 5.43829 5.45620 5.53291 5.64132 5.65106 5.79519 5.86776 5.93321 6.11454 6.14986 6.21733 6.32998 6.45485 6.55501 6.71968 7.46891 7.60893 7.68936 8.08850 8.29869 9.42344 9.95657 10.31369 11.34170 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.004127 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.919248 B = 6783.327703 C = 8172.177720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.071 3.929 3 N -0.330 5.330 4 O 0.135 5.865 5 C -0.107 4.107 6 C 0.562 3.438 7 F -0.155 7.155 8 F -0.160 7.160 9 F -0.142 7.142 10 C -0.158 4.158 11 C 0.589 3.411 12 O -0.509 6.509 13 N -0.691 5.691 14 C 0.168 3.832 15 H 0.096 0.904 16 C 0.147 3.853 17 N -0.732 5.732 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 C -0.163 4.163 27 C -0.176 4.176 28 C -0.182 4.182 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.409 0.591 33 H 0.029 0.971 34 H 0.039 0.961 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.352 2.128 6.764 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 N -0.030 5.030 4 O 0.066 5.934 5 C -0.173 4.173 6 C 0.506 3.494 7 F -0.137 7.137 8 F -0.141 7.141 9 F -0.123 7.123 10 C -0.165 4.165 11 C 0.371 3.629 12 O -0.385 6.385 13 N -0.341 5.341 14 C 0.064 3.936 15 H 0.114 0.886 16 C 0.019 3.981 17 N -0.377 5.377 18 C -0.373 4.373 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.219 1.219 26 C -0.183 4.183 27 C -0.213 4.213 28 C -0.219 4.219 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.245 0.755 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.133 0.867 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.968 2.913 7.347 16.927 hybrid contribution -0.510 -0.375 -1.082 1.253 sum 14.458 2.539 6.265 15.961 Atomic orbital electron populations 1.20438 0.83117 1.06274 1.04404 1.25055 0.99459 0.84963 0.99492 1.73641 0.88597 1.22816 1.17981 1.84649 1.22048 1.19655 1.67023 1.24130 0.94923 0.87024 1.11226 1.16563 0.80656 0.77125 0.75088 1.93315 1.91008 1.94577 1.34751 1.93278 1.65231 1.74446 1.81120 1.93368 1.95516 1.42907 1.80521 1.22368 0.91346 0.97029 1.05773 1.16746 0.77980 0.83113 0.85032 1.90793 1.49967 1.66838 1.30892 1.45971 1.68516 1.11737 1.07896 1.20914 0.93975 0.77566 1.01144 0.88590 1.20943 0.89651 0.95093 0.92376 1.42329 1.29186 1.39633 1.26518 1.19249 1.05241 1.13990 0.98807 0.91022 1.24711 0.98926 0.98425 0.98533 1.69641 1.30500 1.22569 1.35245 0.86129 0.80580 0.77225 0.82277 1.20550 1.21831 1.21880 1.22720 0.92047 1.00807 1.02698 1.22928 0.96565 0.99703 1.02152 1.23303 1.03348 1.03219 0.91984 0.89176 0.89207 0.87648 0.75539 0.95349 0.94360 0.78156 0.93519 0.86867 0.89218 0.89668 0.86723 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 10.49 36.00 0.38 -0.74 16 2 C 0.07 1.01 7.59 -79.77 -0.61 0.40 16 3 N -0.33 -4.63 12.01 34.78 0.42 -4.21 16 4 O 0.14 1.76 11.06 18.65 0.21 1.97 16 5 C -0.11 -1.38 6.85 -34.63 -0.24 -1.61 16 6 C 0.56 6.43 3.34 36.01 0.12 6.55 16 7 F -0.16 -1.71 16.68 2.25 0.04 -1.68 16 8 F -0.16 -1.71 17.30 2.25 0.04 -1.67 16 9 F -0.14 -1.75 13.78 2.25 0.03 -1.72 16 10 C -0.16 -2.25 6.19 -102.89 -0.64 -2.89 16 11 C 0.59 9.09 5.28 -12.53 -0.07 9.02 16 12 O -0.51 -8.95 14.09 5.27 0.07 -8.88 16 13 N -0.69 -10.32 3.17 -54.90 -0.17 -10.50 16 14 C 0.17 2.59 2.57 -67.94 -0.17 2.42 16 15 H 0.10 1.66 7.58 -51.93 -0.39 1.26 16 16 C 0.15 2.64 5.78 -4.04 -0.02 2.61 16 17 N -0.73 -16.74 5.43 -59.91 -0.33 -17.07 16 18 C -0.24 -6.29 9.99 -15.06 -0.15 -6.44 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -26.11 13.06 55.49 0.72 -25.38 16 22 Si 0.91 21.39 29.55 -169.99 -5.02 16.36 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 C -0.16 -2.15 5.73 -90.62 -0.52 -2.66 16 27 C -0.18 -2.18 8.97 -26.69 -0.24 -2.42 16 28 C -0.18 -2.37 9.72 -26.70 -0.26 -2.63 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.41 6.01 8.59 -40.82 -0.35 5.66 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.38 9.25 7.33 -40.82 -0.30 8.95 16 36 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.11 1.35 8.08 -51.93 -0.42 0.93 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 1.09 4.11 -51.93 -0.21 0.88 16 40 H 0.11 1.75 5.25 -51.92 -0.27 1.47 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -28.54 359.51 -5.54 -34.07 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -4.45 Total: 12.03 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.51 Total: 1.25 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.64 Total: -57.15 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: 0.28 Total: -6.91 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.11 Total: -5.07 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.54 -5.54 -34.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670527862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.216 kcal (2) G-P(sol) polarization free energy of solvation -28.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds