Wall clock time and date at job start Wed Apr 1 2020 04:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00226 * 2 1 4 4 H 1.48495 * 109.47331 * 269.99949 * 3 2 1 5 5 H 1.48498 * 109.47280 * 29.99996 * 3 2 1 6 6 H 1.48505 * 109.47158 * 149.99960 * 3 2 1 7 7 C 1.38818 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99819 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00042 * 174.02379 * 9 7 2 11 11 C 1.53005 * 109.54365 * 62.04236 * 10 9 7 12 12 N 1.46508 * 109.46730 * 54.53757 * 11 10 9 13 13 C 1.34776 * 119.99898 * 176.60542 * 12 11 10 14 14 O 1.21284 * 119.99788 * 0.02562 * 13 12 11 15 15 C 1.50695 * 119.99728 * 179.97438 * 13 12 11 16 16 H 1.09004 * 109.76972 * 319.27128 * 15 13 12 17 17 C 1.54106 * 109.76595 * 80.00426 * 15 13 12 18 18 C 1.54919 * 105.96499 * 165.34767 * 17 15 13 19 19 S 1.83183 * 102.70740 * 334.79691 * 18 17 15 20 20 O 1.42094 * 111.27533 * 111.03106 * 19 18 17 21 21 O 1.42105 * 111.27138 * 250.37780 * 19 18 17 22 22 N 1.48173 * 109.85418 * 198.48638 * 15 13 12 23 23 C 1.53173 * 109.61580 * 182.27011 * 10 9 7 24 24 C 1.53086 * 109.16423 * 62.93019 * 23 10 9 25 25 O 1.42903 * 109.41689 * 57.60667 * 24 23 10 26 26 C 1.42900 * 114.09674 * 298.84337 * 25 24 23 27 27 C 1.53089 * 109.41614 * 61.16049 * 26 25 24 28 28 H 0.97009 * 119.99979 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99657 * 354.02092 * 9 7 2 30 30 H 1.08990 * 109.47387 * 294.53696 * 11 10 9 31 31 H 1.09000 * 109.47220 * 174.53406 * 11 10 9 32 32 H 0.97003 * 119.99738 * 356.60769 * 12 11 10 33 33 H 1.09003 * 110.17075 * 46.20148 * 17 15 13 34 34 H 1.08999 * 110.16388 * 284.49030 * 17 15 13 35 35 H 1.09001 * 110.76488 * 93.09581 * 18 17 15 36 36 H 1.08998 * 110.76330 * 216.30470 * 18 17 15 37 37 H 0.96996 * 127.73188 * 16.23100 * 22 15 13 38 38 H 1.09004 * 109.51998 * 182.83343 * 23 10 9 39 39 H 1.08992 * 109.52422 * 303.02070 * 23 10 9 40 40 H 1.09003 * 109.48033 * 297.62694 * 24 23 10 41 41 H 1.09006 * 109.47994 * 177.59028 * 24 23 10 42 42 H 1.08995 * 109.48382 * 301.17279 * 26 25 24 43 43 H 1.09003 * 109.48974 * 181.14334 * 26 25 24 44 44 H 1.09003 * 109.52599 * 182.48578 * 27 26 25 45 45 H 1.09001 * 109.58000 * 62.32200 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0519 -3.6534 -0.1332 11 6 3.0049 -3.8231 1.0518 12 7 2.2539 -3.7002 2.3037 13 6 2.8776 -3.8834 3.4844 14 8 4.0606 -4.1496 3.5103 15 6 2.1053 -3.7564 4.7721 16 1 1.4179 -2.9129 4.7081 17 6 1.3159 -5.0532 5.0365 18 6 0.8718 -4.9870 6.5192 19 16 2.1285 -3.8840 7.2673 20 8 1.5610 -2.6371 7.6445 21 8 2.9973 -4.6037 8.1314 22 7 3.0417 -3.5549 5.9027 23 6 1.0566 -4.8173 -0.1612 24 6 0.1587 -4.6811 -1.3937 25 8 0.9687 -4.6531 -2.5707 26 6 1.8860 -3.5586 -2.6218 27 6 2.8533 -3.6497 -1.4387 28 1 -0.4850 0.8401 -0.0004 29 1 0.3594 -2.3903 0.0873 30 1 3.7744 -3.0523 1.0125 31 1 3.4727 -4.8064 1.0038 32 1 1.3079 -3.4869 2.2829 33 1 1.9543 -5.9216 4.8739 34 1 0.4435 -5.1015 4.3848 35 1 -0.1241 -4.5524 6.6053 36 1 0.9009 -5.9763 6.9758 37 1 3.9744 -3.2918 5.8613 38 1 1.6005 -5.7606 -0.2093 39 1 0.4440 -4.7945 0.7400 40 1 -0.4150 -3.7568 -1.3252 41 1 -0.5235 -5.5300 -1.4420 42 1 1.3349 -2.6197 -2.5693 43 1 2.4482 -3.5985 -3.5548 44 1 3.5256 -2.7918 -1.4509 45 1 3.4344 -4.5690 -1.5119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671957710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:42 Heat of formation + Delta-G solvation = -130.794111 kcal Electronic energy + Delta-G solvation = -30148.996966 eV Core-core repulsion = 25908.256290 eV Total energy + Delta-G solvation = -4240.740676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.08653 -39.15099 -37.26952 -36.66349 -36.05503 -35.79869 -33.65997 -32.31257 -31.87576 -30.72260 -29.27485 -28.15550 -26.03298 -24.17274 -23.27990 -22.92614 -21.96017 -20.39766 -19.70296 -18.78794 -18.14725 -17.35830 -17.23500 -16.52722 -16.07230 -15.72992 -15.68165 -15.49442 -15.12547 -14.91671 -14.74292 -14.38977 -14.08219 -14.01351 -13.69234 -13.59662 -13.25727 -12.90373 -12.72524 -12.31895 -12.25897 -12.16611 -12.08917 -12.04240 -11.81344 -11.72945 -11.54221 -10.99197 -10.96646 -10.88336 -10.86563 -10.42705 -10.13106 -9.97310 -9.83224 -9.78979 -9.58471 -9.29461 -8.87360 -8.70014 -7.20294 -5.95972 -3.27177 0.01483 2.29414 2.68175 3.27764 3.33123 3.40493 3.40822 3.41662 3.79550 4.02671 4.20112 4.31520 4.43838 4.53655 4.66158 4.90398 5.04593 5.07980 5.14517 5.17772 5.27046 5.40968 5.42768 5.45119 5.46636 5.57135 5.69988 5.90986 5.98239 6.01389 6.10468 6.21977 6.33320 6.43732 6.45986 6.63621 6.69587 6.78976 6.99906 7.56620 7.65469 7.75641 8.21004 8.36343 9.34178 9.83135 10.19749 11.25382 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.003558 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.777870 B = 7867.755527 C = 9313.069758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.003 4.003 3 Si 0.902 3.098 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.188 3.812 11 C 0.117 3.883 12 N -0.694 5.694 13 C 0.520 3.480 14 O -0.539 6.539 15 C 0.084 3.916 16 H 0.116 0.884 17 C -0.113 4.113 18 C -0.601 4.601 19 S 2.579 3.421 20 O -0.950 6.950 21 O -0.961 6.961 22 N -1.080 6.080 23 C -0.150 4.150 24 C 0.066 3.934 25 O -0.393 6.393 26 C 0.070 3.930 27 C -0.152 4.152 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.405 0.595 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.441 0.559 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.478 -12.646 6.293 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.733 3.267 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.096 3.904 11 C -0.009 4.009 12 N -0.344 5.344 13 C 0.302 3.698 14 O -0.416 6.416 15 C -0.029 4.029 16 H 0.134 0.866 17 C -0.154 4.154 18 C -0.731 4.731 19 S 2.672 3.328 20 O -0.939 6.939 21 O -0.950 6.950 22 N -0.848 5.848 23 C -0.189 4.189 24 C -0.011 4.011 25 O -0.312 6.312 26 C -0.007 4.007 27 C -0.192 4.192 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.241 0.759 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.284 0.716 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.441 -12.470 7.106 14.360 hybrid contribution -0.090 1.227 -0.384 1.289 sum -0.532 -11.243 6.722 13.110 Atomic orbital electron populations 1.69631 1.05035 1.25931 1.56926 1.24693 0.95402 0.97568 1.02299 0.86288 0.78866 0.84036 0.77560 1.21665 1.21778 1.20784 1.19040 0.90975 0.83584 1.43528 0.91195 1.42487 1.06207 0.99484 1.87315 1.19836 0.91322 0.87447 0.91773 1.21887 0.95260 1.00360 0.83414 1.45746 1.14127 1.69339 1.05194 1.19811 0.87647 0.77827 0.84491 1.90695 1.15289 1.48569 1.87050 1.22061 0.92019 0.99467 0.89333 0.86630 1.22395 1.01598 0.97559 0.93808 1.30756 1.17439 1.17261 1.07647 1.06127 0.76756 0.76463 0.73409 1.93674 1.79211 1.40070 1.80966 1.93608 1.62790 1.74372 1.64274 1.55328 1.22333 1.86883 1.20256 1.22350 0.98924 0.98638 0.98959 1.22462 0.92465 1.01663 0.84553 1.87802 1.52853 1.49589 1.40971 1.22451 0.90843 0.90233 0.97136 1.22451 0.98919 1.01578 0.96296 0.93366 0.78044 0.91433 0.92483 0.75885 0.88326 0.86846 0.83777 0.83787 0.71650 0.91204 0.91302 0.92164 0.90087 0.91199 0.90376 0.90428 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.73 13.07 55.49 0.73 -24.01 16 2 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 3 Si 0.90 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.24 -5.60 8.67 -15.06 -0.13 -5.74 16 8 H 0.07 1.66 6.78 -52.49 -0.36 1.31 16 9 N -0.71 -13.95 3.60 -47.06 -0.17 -14.12 16 10 C 0.19 2.98 0.41 -131.63 -0.05 2.93 16 11 C 0.12 1.84 4.36 -4.03 -0.02 1.82 16 12 N -0.69 -9.83 5.13 -60.29 -0.31 -10.14 16 13 C 0.52 7.42 7.09 -10.99 -0.08 7.34 16 14 O -0.54 -9.49 16.29 5.55 0.09 -9.40 16 15 C 0.08 0.90 3.30 -67.59 -0.22 0.68 16 16 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 17 C -0.11 -0.82 6.11 -25.14 -0.15 -0.97 16 18 C -0.60 -3.61 7.49 38.17 0.29 -3.32 16 19 S 2.58 26.76 6.40 -107.50 -0.69 26.07 16 20 O -0.95 -13.20 18.14 -57.41 -1.04 -14.24 16 21 O -0.96 -13.06 18.14 -57.41 -1.04 -14.10 16 22 N -1.08 -12.42 6.63 -4.43 -0.03 -12.45 16 23 C -0.15 -1.99 4.80 -26.60 -0.13 -2.12 16 24 C 0.07 0.94 6.67 37.20 0.25 1.18 16 25 O -0.39 -6.40 10.77 -35.23 -0.38 -6.78 16 26 C 0.07 1.14 6.68 37.20 0.25 1.39 16 27 C -0.15 -2.42 4.78 -26.59 -0.13 -2.55 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.38 8.10 6.82 -40.82 -0.28 7.82 16 30 H 0.07 1.25 7.47 -51.93 -0.39 0.86 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.41 5.35 7.43 -40.82 -0.30 5.04 16 33 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.44 5.28 8.54 -40.75 -0.35 4.94 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.81 7.40 -51.93 -0.38 0.42 16 40 H 0.06 0.97 7.15 -51.93 -0.37 0.60 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.34 7.75 -51.93 -0.40 0.94 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.08 1.34 7.20 -51.93 -0.37 0.96 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -33.84 371.15 -9.06 -42.90 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -6.57 Total: 14.28 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -0.22 Total: 0.49 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.22 Total: -60.71 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -2.37 Total: -44.52 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 26.76 SS G_CDS: -0.69 Total: 26.07 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.84 -9.06 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671957710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.892 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds