Wall clock time and date at job start Wed Apr 1 2020 04:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00226 * 2 1 4 4 H 1.48495 * 109.47331 * 269.99949 * 3 2 1 5 5 H 1.48498 * 109.47280 * 29.99996 * 3 2 1 6 6 H 1.48505 * 109.47158 * 149.99960 * 3 2 1 7 7 C 1.38818 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99819 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00042 * 174.02379 * 9 7 2 11 11 C 1.53005 * 109.54365 * 62.04236 * 10 9 7 12 12 N 1.46508 * 109.46730 * 54.53757 * 11 10 9 13 13 C 1.34776 * 119.99898 * 176.60542 * 12 11 10 14 14 O 1.21284 * 119.99788 * 0.02562 * 13 12 11 15 15 C 1.50695 * 119.99728 * 179.97438 * 13 12 11 16 16 H 1.09004 * 109.76972 * 319.27128 * 15 13 12 17 17 C 1.54106 * 109.76595 * 80.00426 * 15 13 12 18 18 C 1.54919 * 105.96499 * 165.34767 * 17 15 13 19 19 S 1.83183 * 102.70740 * 334.79691 * 18 17 15 20 20 O 1.42094 * 111.27533 * 111.03106 * 19 18 17 21 21 O 1.42105 * 111.27138 * 250.37780 * 19 18 17 22 22 N 1.48173 * 109.85418 * 198.48638 * 15 13 12 23 23 C 1.53173 * 109.61580 * 182.27011 * 10 9 7 24 24 C 1.53086 * 109.16423 * 62.93019 * 23 10 9 25 25 O 1.42903 * 109.41689 * 57.60667 * 24 23 10 26 26 C 1.42900 * 114.09674 * 298.84337 * 25 24 23 27 27 C 1.53089 * 109.41614 * 61.16049 * 26 25 24 28 28 H 0.97009 * 119.99979 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99657 * 354.02092 * 9 7 2 30 30 H 1.08990 * 109.47387 * 294.53696 * 11 10 9 31 31 H 1.09000 * 109.47220 * 174.53406 * 11 10 9 32 32 H 0.97003 * 119.99738 * 356.60769 * 12 11 10 33 33 H 1.09003 * 110.17075 * 46.20148 * 17 15 13 34 34 H 1.08999 * 110.16388 * 284.49030 * 17 15 13 35 35 H 1.09001 * 110.76488 * 93.09581 * 18 17 15 36 36 H 1.08998 * 110.76330 * 216.30470 * 18 17 15 37 37 H 0.96996 * 127.73188 * 16.23100 * 22 15 13 38 38 H 1.09004 * 109.51998 * 182.83343 * 23 10 9 39 39 H 1.08992 * 109.52422 * 303.02070 * 23 10 9 40 40 H 1.09003 * 109.48033 * 297.62694 * 24 23 10 41 41 H 1.09006 * 109.47994 * 177.59028 * 24 23 10 42 42 H 1.08995 * 109.48382 * 301.17279 * 26 25 24 43 43 H 1.09003 * 109.48974 * 181.14334 * 26 25 24 44 44 H 1.09003 * 109.52599 * 182.48578 * 27 26 25 45 45 H 1.09001 * 109.58000 * 62.32200 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0519 -3.6534 -0.1332 11 6 3.0049 -3.8231 1.0518 12 7 2.2539 -3.7002 2.3037 13 6 2.8776 -3.8834 3.4844 14 8 4.0606 -4.1496 3.5103 15 6 2.1053 -3.7564 4.7721 16 1 1.4179 -2.9129 4.7081 17 6 1.3159 -5.0532 5.0365 18 6 0.8718 -4.9870 6.5192 19 16 2.1285 -3.8840 7.2673 20 8 1.5610 -2.6371 7.6445 21 8 2.9973 -4.6037 8.1314 22 7 3.0417 -3.5549 5.9027 23 6 1.0566 -4.8173 -0.1612 24 6 0.1587 -4.6811 -1.3937 25 8 0.9687 -4.6531 -2.5707 26 6 1.8860 -3.5586 -2.6218 27 6 2.8533 -3.6497 -1.4387 28 1 -0.4850 0.8401 -0.0004 29 1 0.3594 -2.3903 0.0873 30 1 3.7744 -3.0523 1.0125 31 1 3.4727 -4.8064 1.0038 32 1 1.3079 -3.4869 2.2829 33 1 1.9543 -5.9216 4.8739 34 1 0.4435 -5.1015 4.3848 35 1 -0.1241 -4.5524 6.6053 36 1 0.9009 -5.9763 6.9758 37 1 3.9744 -3.2918 5.8613 38 1 1.6005 -5.7606 -0.2093 39 1 0.4440 -4.7945 0.7400 40 1 -0.4150 -3.7568 -1.3252 41 1 -0.5235 -5.5300 -1.4420 42 1 1.3349 -2.6197 -2.5693 43 1 2.4482 -3.5985 -3.5548 44 1 3.5256 -2.7918 -1.4509 45 1 3.4344 -4.5690 -1.5119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671957710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:41 Heat of formation + Delta-G solvation = -160.872854 kcal Electronic energy + Delta-G solvation = -30150.301278 eV Core-core repulsion = 25908.256290 eV Total energy + Delta-G solvation = -4242.044988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25947 -40.36061 -38.19288 -37.63477 -37.11469 -36.91217 -35.13759 -33.85246 -32.59134 -31.93567 -30.93253 -29.21764 -27.06699 -25.89772 -24.42781 -23.89254 -23.08917 -21.45437 -20.60062 -20.10097 -19.23511 -18.96856 -18.09771 -17.53316 -17.22490 -16.98310 -16.72855 -16.67425 -16.23481 -16.07183 -15.92408 -15.76443 -15.41609 -15.31609 -14.81121 -14.41610 -14.23755 -14.12927 -13.79819 -13.65534 -13.32510 -13.26376 -13.12695 -13.11064 -12.95399 -12.89303 -12.85665 -12.66048 -12.30727 -12.21960 -12.06654 -11.74226 -11.56915 -11.38612 -11.09910 -11.05912 -10.91221 -10.57808 -10.28598 -9.94208 -8.95443 -7.90819 -5.15963 -0.74281 1.40775 1.44520 1.49617 1.52518 1.66298 2.22797 2.56793 2.66553 3.03867 3.12033 3.37341 3.42935 3.48126 3.78949 3.79771 3.91250 3.92772 4.01286 4.18870 4.20261 4.28599 4.31323 4.53164 4.64658 4.72733 4.78659 4.81471 4.87181 4.88304 4.91994 4.93399 5.08559 5.14337 5.25864 5.31482 5.38823 5.54515 5.64723 6.04440 6.31990 6.41312 6.62633 7.23856 7.42346 8.11163 8.38115 9.30916 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.003558 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.777870 B = 7867.755527 C = 9313.069758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.055 4.055 3 Si 0.942 3.058 4 H -0.293 1.293 5 H -0.302 1.302 6 H -0.284 1.284 7 C -0.212 4.212 8 H 0.064 0.936 9 N -0.711 5.711 10 C 0.186 3.814 11 C 0.125 3.875 12 N -0.690 5.690 13 C 0.519 3.481 14 O -0.576 6.576 15 C 0.079 3.921 16 H 0.126 0.874 17 C -0.112 4.112 18 C -0.557 4.557 19 S 2.572 3.428 20 O -0.995 6.995 21 O -1.001 7.001 22 N -1.092 6.092 23 C -0.141 4.141 24 C 0.062 3.938 25 O -0.399 6.399 26 C 0.076 3.924 27 C -0.151 4.151 28 H 0.248 0.752 29 H 0.379 0.621 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.412 0.588 33 H 0.104 0.896 34 H 0.148 0.852 35 H 0.176 0.824 36 H 0.176 0.824 37 H 0.435 0.565 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.037 0.963 41 H 0.112 0.888 42 H 0.034 0.966 43 H 0.095 0.905 44 H 0.058 0.942 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 -15.541 6.319 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.248 4.248 3 Si 0.775 3.225 4 H -0.221 1.221 5 H -0.229 1.229 6 H -0.209 1.209 7 C -0.344 4.344 8 H 0.082 0.918 9 N -0.352 5.352 10 C 0.095 3.905 11 C -0.002 4.002 12 N -0.340 5.340 13 C 0.303 3.697 14 O -0.456 6.456 15 C -0.033 4.033 16 H 0.143 0.857 17 C -0.152 4.152 18 C -0.692 4.692 19 S 2.671 3.329 20 O -0.984 6.984 21 O -0.991 6.991 22 N -0.858 5.858 23 C -0.179 4.179 24 C -0.015 4.015 25 O -0.318 6.318 26 C -0.001 4.001 27 C -0.191 4.191 28 H 0.057 0.943 29 H 0.214 0.786 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.249 0.751 33 H 0.122 0.878 34 H 0.166 0.834 35 H 0.194 0.806 36 H 0.194 0.806 37 H 0.275 0.725 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.055 0.945 41 H 0.130 0.870 42 H 0.053 0.947 43 H 0.113 0.887 44 H 0.076 0.924 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.726 -15.364 7.150 17.034 hybrid contribution 0.363 2.015 -0.460 2.098 sum -1.363 -13.349 6.689 14.993 Atomic orbital electron populations 1.69715 1.05682 1.25434 1.59711 1.25099 0.95885 0.99401 1.04449 0.85621 0.77787 0.82182 0.76948 1.22118 1.22867 1.20950 1.19147 0.90734 0.84771 1.39739 0.91847 1.42491 1.05934 0.99880 1.86918 1.20038 0.91898 0.86866 0.91669 1.21684 0.94534 0.99952 0.83985 1.45699 1.14295 1.69216 1.04816 1.20374 0.87360 0.76571 0.85388 1.90680 1.17078 1.50194 1.87653 1.22308 0.91751 1.02168 0.87079 0.85675 1.22565 1.02416 0.95343 0.94905 1.30562 1.15966 1.16943 1.05762 1.06148 0.77274 0.76371 0.73075 1.93616 1.79687 1.43156 1.81961 1.93553 1.64958 1.74717 1.65855 1.55409 1.22237 1.87200 1.20949 1.22314 0.98342 0.97803 0.99457 1.22624 0.92648 1.01867 0.84337 1.87801 1.52922 1.48971 1.42148 1.22336 0.90680 0.88904 0.98193 1.22426 0.98675 1.01858 0.96120 0.94329 0.78648 0.94775 0.91056 0.75070 0.87776 0.83359 0.80586 0.80627 0.72482 0.89168 0.89120 0.94500 0.86979 0.94746 0.88725 0.92370 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -51.54 13.07 21.65 0.28 -51.26 16 2 C -0.05 -2.81 5.50 84.86 0.47 -2.34 16 3 Si 0.94 43.80 29.55 68.60 2.03 45.83 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.21 -9.89 8.67 84.03 0.73 -9.17 16 8 H 0.06 3.04 6.78 -2.91 -0.02 3.02 16 9 N -0.71 -27.34 3.60 -302.80 -1.09 -28.43 16 10 C 0.19 5.56 0.41 3.73 0.00 5.56 16 11 C 0.13 3.74 4.36 86.38 0.38 4.12 16 12 N -0.69 -18.17 5.13 -463.05 -2.38 -20.54 16 13 C 0.52 14.03 7.09 87.66 0.62 14.65 16 14 O -0.58 -20.03 16.29 -3.04 -0.05 -20.08 16 15 C 0.08 1.53 3.30 44.30 0.15 1.68 16 16 H 0.13 2.18 8.14 -2.38 -0.02 2.16 16 17 C -0.11 -1.10 6.11 31.62 0.19 -0.91 16 18 C -0.56 -4.09 7.49 72.64 0.54 -3.54 16 19 S 2.57 50.92 6.40 -56.49 -0.36 50.55 16 20 O -0.99 -27.60 18.14 -127.78 -2.32 -29.91 16 21 O -1.00 -27.18 18.14 -127.78 -2.32 -29.50 16 22 N -1.09 -24.67 6.63 -167.92 -1.11 -25.79 16 23 C -0.14 -3.24 4.80 30.68 0.15 -3.09 16 24 C 0.06 1.59 6.67 72.01 0.48 2.07 16 25 O -0.40 -12.09 10.77 -148.98 -1.60 -13.69 16 26 C 0.08 2.39 6.68 72.01 0.48 2.87 16 27 C -0.15 -4.59 4.78 30.69 0.15 -4.44 16 28 H 0.25 13.43 8.31 -92.70 -0.77 12.66 16 29 H 0.38 15.69 6.82 -92.71 -0.63 15.06 16 30 H 0.03 1.25 7.47 -2.39 -0.02 1.24 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.41 9.77 7.43 -92.71 -0.69 9.08 16 33 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 34 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.18 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.18 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.43 10.82 8.54 -92.76 -0.79 10.03 16 38 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.09 1.72 7.40 -2.39 -0.02 1.70 16 40 H 0.04 1.13 7.15 -2.39 -0.02 1.12 16 41 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 42 H 0.03 1.33 7.75 -2.39 -0.02 1.31 16 43 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.06 1.99 7.20 -2.39 -0.02 1.97 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -76.54 371.15 -5.65 -82.19 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -1.07 Total: 33.16 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 4.33 Total: 7.46 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -4.30 Total: -126.02 kcal Atomic # 8 Polarization: -86.89 SS G_CDS: -6.29 Total: -93.18 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 50.92 SS G_CDS: -0.36 Total: 50.55 kcal Total: -76.54 -5.65 -82.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671957710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.678 kcal (2) G-P(sol) polarization free energy of solvation -76.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds