Wall clock time and date at job start Wed Apr 1 2020 04:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 119.99867 * 2 1 4 4 H 1.48498 * 109.47013 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47405 * 299.99873 * 3 2 1 6 6 H 1.48501 * 109.47228 * 60.00136 * 3 2 1 7 7 C 1.38808 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99910 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00558 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00477 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47425 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.55142 * 59.86907 * 11 10 9 13 13 C 1.53293 * 109.51284 * 180.02562 * 11 10 9 14 14 N 1.47144 * 108.38541 * 172.22530 * 13 11 10 15 15 C 1.34777 * 120.98528 * 129.43726 * 14 13 11 16 16 O 1.21278 * 119.99854 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00161 * 179.97438 * 15 14 13 18 18 N 1.46505 * 109.47064 * 180.02562 * 17 15 14 19 19 C 1.47059 * 126.30063 * 274.68636 * 18 17 15 20 20 C 1.54322 * 109.96584 * 150.90258 * 19 18 17 21 21 C 1.55607 * 104.18962 * 45.51151 * 20 19 18 22 22 S 1.66998 * 126.29723 * 95.00117 * 18 17 15 23 23 O 1.42097 * 105.13699 * 298.89072 * 22 18 17 24 24 O 1.42100 * 105.13696 * 68.44735 * 22 18 17 25 25 C 1.47158 * 118.03621 * 309.71457 * 14 13 11 26 26 C 1.52884 * 108.60531 * 50.22661 * 25 14 13 27 27 O 1.42961 * 109.50700 * 299.74460 * 11 10 9 28 28 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99844 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.46703 * 59.99707 * 10 9 7 31 31 H 1.09003 * 109.47052 * 300.00327 * 10 9 7 32 32 H 1.08995 * 109.68431 * 52.50061 * 13 11 10 33 33 H 1.08999 * 109.67902 * 291.94622 * 13 11 10 34 34 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 35 35 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 36 36 H 1.08989 * 109.35927 * 271.18707 * 19 18 17 37 37 H 1.09002 * 109.35613 * 30.83517 * 19 18 17 38 38 H 1.08995 * 110.65344 * 286.77842 * 20 19 18 39 39 H 1.09001 * 110.38344 * 164.10848 * 20 19 18 40 40 H 1.09002 * 111.16878 * 204.05699 * 21 20 19 41 41 H 1.09000 * 111.17140 * 79.78651 * 21 20 19 42 42 H 1.08998 * 109.68415 * 170.00597 * 25 14 13 43 43 H 1.08997 * 109.68008 * 290.56299 * 25 14 13 44 44 H 1.09003 * 109.57808 * 187.92352 * 26 25 14 45 45 H 1.08994 * 109.41104 * 67.84422 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0901 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 -0.0001 12 1 0.4352 -4.7618 -0.8887 13 6 1.8293 -6.1479 0.0005 14 7 0.8623 -7.2409 0.1888 15 6 0.8489 -8.3055 -0.6375 16 8 1.6421 -8.3729 -1.5525 17 6 -0.1509 -9.4127 -0.4239 18 7 0.0388 -10.4457 -1.4453 19 6 -0.5428 -10.4519 -2.7960 20 6 0.3849 -11.2136 -3.7658 21 6 0.7738 -12.5037 -2.9874 22 16 0.9495 -11.8366 -1.2874 23 8 2.2754 -11.3866 -1.0453 24 8 0.2480 -12.6343 -0.3435 25 6 -0.0940 -7.1342 1.3023 26 6 -0.7623 -5.7606 1.2415 27 8 0.2449 -4.7484 1.1696 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6846 -3.7145 0.8905 31 1 2.6847 -3.7146 -0.8894 32 1 2.5533 -6.1539 0.8153 33 1 2.3456 -6.2744 -0.9510 34 1 -1.1609 -9.0095 -0.4977 35 1 -0.0049 -9.8483 0.5645 36 1 -1.5177 -10.9382 -2.7673 37 1 -0.6625 -9.4253 -3.1424 38 1 1.2725 -10.6230 -3.9923 39 1 -0.1492 -11.4675 -4.6814 40 1 1.7173 -12.9124 -3.3492 41 1 -0.0205 -13.2484 -3.0378 42 1 -0.8506 -7.9136 1.2123 43 1 0.4331 -7.2412 2.2503 44 1 -1.3677 -5.6090 2.1351 45 1 -1.3978 -5.7057 0.3576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673279996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:04 Heat of formation + Delta-G solvation = -105.191469 kcal Electronic energy + Delta-G solvation = -29264.712496 eV Core-core repulsion = 25025.082034 eV Total energy + Delta-G solvation = -4239.630462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.42506 -38.55508 -37.36766 -37.30849 -36.18394 -35.06574 -34.37144 -33.59899 -32.20722 -30.25447 -28.93523 -27.72303 -26.35678 -25.08694 -23.49557 -22.69922 -22.34484 -20.90339 -19.78258 -19.01811 -17.90570 -17.52850 -17.24446 -17.04265 -16.41991 -16.19989 -15.88754 -15.57688 -15.11889 -14.96681 -14.89320 -14.57977 -14.43012 -14.15789 -13.81508 -13.63140 -13.51511 -13.15126 -12.95817 -12.69008 -12.48732 -12.39614 -12.25026 -12.21049 -12.11960 -12.00546 -11.60667 -11.42839 -11.01129 -10.94650 -10.89046 -10.80259 -10.50106 -10.30837 -10.00867 -9.88763 -9.69297 -9.26820 -8.85956 -8.54199 -6.87771 -5.72050 -3.00482 -0.19851 1.99912 2.45572 2.75959 3.21054 3.42942 3.46359 3.51857 3.54224 3.83755 3.93196 4.05285 4.22749 4.35003 4.45173 4.59347 4.72515 4.73417 4.80419 4.86390 4.91339 5.05364 5.07448 5.13985 5.14290 5.30859 5.36668 5.39862 5.48304 5.61020 5.66188 5.69519 5.87177 5.92911 5.97798 6.27986 6.31954 6.57141 6.71145 7.21450 7.45760 7.73789 8.01667 8.46291 9.58112 10.15319 10.51423 11.50910 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.026137 B = 0.002137 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.008389 B =13097.794465 C =13394.706641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.075 3.925 12 H 0.062 0.938 13 C 0.086 3.914 14 N -0.615 5.615 15 C 0.489 3.511 16 O -0.517 6.517 17 C 0.143 3.857 18 N -0.976 5.976 19 C 0.082 3.918 20 C -0.124 4.124 21 C -0.596 4.596 22 S 2.568 3.432 23 O -0.941 6.941 24 O -0.959 6.959 25 C 0.068 3.932 26 C 0.046 3.954 27 O -0.356 6.356 28 H 0.254 0.746 29 H 0.387 0.613 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.143 -28.637 -4.677 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.016 3.984 12 H 0.080 0.920 13 C -0.037 4.037 14 N -0.351 5.351 15 C 0.274 3.726 16 O -0.392 6.392 17 C 0.015 3.985 18 N -0.816 5.816 19 C -0.044 4.044 20 C -0.163 4.163 21 C -0.727 4.727 22 S 2.664 3.336 23 O -0.931 6.931 24 O -0.948 6.948 25 C -0.055 4.055 26 C -0.032 4.032 27 O -0.274 6.274 28 H 0.064 0.936 29 H 0.221 0.779 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.123 0.877 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.065 -28.706 -4.138 29.287 hybrid contribution -0.243 0.843 -0.758 1.160 sum -4.308 -27.863 -4.896 28.616 Atomic orbital electron populations 1.69685 1.05113 1.25424 1.57887 1.24742 0.95536 0.97678 1.03120 0.86102 0.78787 0.84098 0.77128 1.20546 1.21930 1.21887 1.19278 0.91057 0.84084 1.42433 0.91093 1.42220 1.06053 0.99468 1.89306 1.20628 0.92383 0.84696 0.98815 1.22796 0.92978 0.94298 0.88357 0.91976 1.22337 0.91599 0.85487 1.04286 1.48208 1.35481 1.20965 1.30425 1.21295 0.85792 0.83194 0.82272 1.90709 1.39793 1.77715 1.30943 1.20852 0.99416 0.87393 0.90865 1.56854 1.67483 1.37316 1.19897 1.22113 0.96718 1.04146 0.81384 1.22686 1.01983 0.92288 0.99375 1.30825 1.11854 1.07453 1.22537 1.06584 0.74618 0.74970 0.77474 1.93668 1.37080 1.78677 1.83632 1.93620 1.73894 1.69175 1.58152 1.22488 0.92813 0.99719 0.90473 1.22833 0.90902 0.86607 1.02877 1.88181 1.46161 1.50532 1.42522 0.93637 0.77854 0.95322 0.94694 0.90379 0.88041 0.87035 0.87406 0.90404 0.88719 0.88192 0.87167 0.84058 0.84127 0.89221 0.90038 0.87660 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.98 5.50 -59.91 -0.33 -19.31 16 10 C 0.16 3.37 5.95 -4.04 -0.02 3.34 16 11 C 0.07 1.26 2.86 -26.58 -0.08 1.19 16 12 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 13 C 0.09 1.25 5.93 -3.54 -0.02 1.23 16 14 N -0.61 -7.59 3.03 -172.53 -0.52 -8.11 16 15 C 0.49 6.17 7.78 -10.98 -0.09 6.08 16 16 O -0.52 -8.36 15.90 5.56 0.09 -8.27 16 17 C 0.14 1.22 5.21 -5.19 -0.03 1.19 16 18 N -0.98 -8.32 2.80 -114.47 -0.32 -8.64 16 19 C 0.08 0.45 6.83 -3.05 -0.02 0.43 16 20 C -0.12 -0.56 6.81 -24.65 -0.17 -0.72 16 21 C -0.60 -2.67 7.51 38.54 0.29 -2.38 16 22 S 2.57 23.74 6.17 -107.50 -0.66 23.07 16 23 O -0.94 -13.04 18.13 -57.43 -1.04 -14.08 16 24 O -0.96 -11.13 18.14 -57.43 -1.04 -12.17 16 25 C 0.07 0.63 6.51 -3.74 -0.02 0.61 16 26 C 0.05 0.53 6.97 37.10 0.26 0.79 16 27 O -0.36 -6.09 10.14 -35.23 -0.36 -6.45 16 28 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.39 10.74 7.55 -40.82 -0.31 10.43 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.10 1.55 7.08 -51.93 -0.37 1.18 16 34 H 0.11 0.59 7.65 -51.93 -0.40 0.20 16 35 H 0.11 0.76 8.03 -51.93 -0.42 0.35 16 36 H 0.08 0.24 8.14 -51.94 -0.42 -0.18 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.14 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.50 6.05 -51.93 -0.31 0.18 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -40.90 379.94 -9.75 -50.65 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.85 Total: 3.55 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -0.15 Total: 4.28 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: -0.45 Total: -64.02 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -2.35 Total: -40.98 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Atomic # 16 Polarization: 23.74 SS G_CDS: -0.66 Total: 23.07 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -40.90 -9.75 -50.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673279996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.537 kcal (2) G-P(sol) polarization free energy of solvation -40.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds