Wall clock time and date at job start Wed Apr 1 2020 04:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 119.99867 * 2 1 4 4 H 1.48498 * 109.47013 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47405 * 299.99873 * 3 2 1 6 6 H 1.48501 * 109.47228 * 60.00136 * 3 2 1 7 7 C 1.38808 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99910 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00558 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00477 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47425 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.55142 * 59.86907 * 11 10 9 13 13 C 1.53293 * 109.51284 * 180.02562 * 11 10 9 14 14 N 1.47144 * 108.38541 * 172.22530 * 13 11 10 15 15 C 1.34777 * 120.98528 * 129.43726 * 14 13 11 16 16 O 1.21278 * 119.99854 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00161 * 179.97438 * 15 14 13 18 18 N 1.46505 * 109.47064 * 180.02562 * 17 15 14 19 19 C 1.47059 * 126.30063 * 274.68636 * 18 17 15 20 20 C 1.54322 * 109.96584 * 150.90258 * 19 18 17 21 21 C 1.55607 * 104.18962 * 45.51151 * 20 19 18 22 22 S 1.66998 * 126.29723 * 95.00117 * 18 17 15 23 23 O 1.42097 * 105.13699 * 298.89072 * 22 18 17 24 24 O 1.42100 * 105.13696 * 68.44735 * 22 18 17 25 25 C 1.47158 * 118.03621 * 309.71457 * 14 13 11 26 26 C 1.52884 * 108.60531 * 50.22661 * 25 14 13 27 27 O 1.42961 * 109.50700 * 299.74460 * 11 10 9 28 28 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99844 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.46703 * 59.99707 * 10 9 7 31 31 H 1.09003 * 109.47052 * 300.00327 * 10 9 7 32 32 H 1.08995 * 109.68431 * 52.50061 * 13 11 10 33 33 H 1.08999 * 109.67902 * 291.94622 * 13 11 10 34 34 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 35 35 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 36 36 H 1.08989 * 109.35927 * 271.18707 * 19 18 17 37 37 H 1.09002 * 109.35613 * 30.83517 * 19 18 17 38 38 H 1.08995 * 110.65344 * 286.77842 * 20 19 18 39 39 H 1.09001 * 110.38344 * 164.10848 * 20 19 18 40 40 H 1.09002 * 111.16878 * 204.05699 * 21 20 19 41 41 H 1.09000 * 111.17140 * 79.78651 * 21 20 19 42 42 H 1.08998 * 109.68415 * 170.00597 * 25 14 13 43 43 H 1.08997 * 109.68008 * 290.56299 * 25 14 13 44 44 H 1.09003 * 109.57808 * 187.92352 * 26 25 14 45 45 H 1.08994 * 109.41104 * 67.84422 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0901 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 -0.0001 12 1 0.4352 -4.7618 -0.8887 13 6 1.8293 -6.1479 0.0005 14 7 0.8623 -7.2409 0.1888 15 6 0.8489 -8.3055 -0.6375 16 8 1.6421 -8.3729 -1.5525 17 6 -0.1509 -9.4127 -0.4239 18 7 0.0388 -10.4457 -1.4453 19 6 -0.5428 -10.4519 -2.7960 20 6 0.3849 -11.2136 -3.7658 21 6 0.7738 -12.5037 -2.9874 22 16 0.9495 -11.8366 -1.2874 23 8 2.2754 -11.3866 -1.0453 24 8 0.2480 -12.6343 -0.3435 25 6 -0.0940 -7.1342 1.3023 26 6 -0.7623 -5.7606 1.2415 27 8 0.2449 -4.7484 1.1696 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6846 -3.7145 0.8905 31 1 2.6847 -3.7146 -0.8894 32 1 2.5533 -6.1539 0.8153 33 1 2.3456 -6.2744 -0.9510 34 1 -1.1609 -9.0095 -0.4977 35 1 -0.0049 -9.8483 0.5645 36 1 -1.5177 -10.9382 -2.7673 37 1 -0.6625 -9.4253 -3.1424 38 1 1.2725 -10.6230 -3.9923 39 1 -0.1492 -11.4675 -4.6814 40 1 1.7173 -12.9124 -3.3492 41 1 -0.0205 -13.2484 -3.0378 42 1 -0.8506 -7.9136 1.2123 43 1 0.4331 -7.2412 2.2503 44 1 -1.3677 -5.6090 2.1351 45 1 -1.3978 -5.7057 0.3576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673279996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:03 Heat of formation + Delta-G solvation = -139.962685 kcal Electronic energy + Delta-G solvation = -29266.220289 eV Core-core repulsion = 25025.082034 eV Total energy + Delta-G solvation = -4241.138255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44272 -39.62706 -38.11066 -37.93193 -36.96089 -36.66776 -35.72019 -34.25928 -33.80729 -31.92435 -29.75127 -28.84342 -27.22825 -26.29212 -24.85508 -23.94130 -23.01426 -22.31226 -20.66275 -19.77272 -19.25480 -18.62945 -18.25046 -17.88696 -17.59001 -16.99918 -16.94050 -16.61030 -16.46151 -15.98762 -15.80838 -15.66044 -15.41775 -15.13703 -15.01326 -14.62975 -14.46493 -14.18326 -14.04711 -14.00479 -13.71341 -13.38296 -13.21646 -13.05039 -12.98778 -12.82097 -12.72647 -12.61005 -12.42372 -12.23453 -12.04283 -12.01952 -11.88425 -11.62223 -11.45930 -11.24220 -11.07249 -10.96530 -9.97793 -9.61257 -9.01447 -7.94757 -5.24180 -0.79252 1.38704 1.47543 1.48950 1.52487 1.59200 1.84786 2.56042 2.61291 2.77496 2.99251 3.30104 3.39046 3.46508 3.59086 3.61338 3.88207 3.90738 3.99153 4.05442 4.06367 4.16216 4.22327 4.35354 4.39051 4.45922 4.51071 4.53543 4.65784 4.69913 4.76368 4.84507 4.89620 4.93693 4.99764 5.07260 5.08348 5.24933 5.43849 5.48127 6.24505 6.27480 6.30826 7.06498 7.33281 8.06717 8.32341 9.29179 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.026137 B = 0.002137 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.008389 B =13097.794465 C =13394.706641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.247 4.247 8 H 0.076 0.924 9 N -0.739 5.739 10 C 0.159 3.841 11 C 0.092 3.908 12 H 0.051 0.949 13 C 0.095 3.905 14 N -0.617 5.617 15 C 0.482 3.518 16 O -0.561 6.561 17 C 0.140 3.860 18 N -0.980 5.980 19 C 0.073 3.927 20 C -0.126 4.126 21 C -0.557 4.557 22 S 2.548 3.452 23 O -1.004 7.004 24 O -0.992 6.992 25 C 0.070 3.930 26 C 0.037 3.963 27 O -0.390 6.390 28 H 0.252 0.748 29 H 0.376 0.624 30 H 0.027 0.973 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.152 0.848 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.176 0.824 42 H 0.136 0.864 43 H 0.088 0.912 44 H 0.128 0.872 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 -30.470 -5.421 31.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.378 4.378 8 H 0.094 0.906 9 N -0.382 5.382 10 C 0.032 3.968 11 C 0.033 3.967 12 H 0.069 0.931 13 C -0.029 4.029 14 N -0.352 5.352 15 C 0.269 3.731 16 O -0.439 6.439 17 C 0.011 3.989 18 N -0.820 5.820 19 C -0.052 4.052 20 C -0.165 4.165 21 C -0.692 4.692 22 S 2.649 3.351 23 O -0.993 6.993 24 O -0.982 6.982 25 C -0.051 4.051 26 C -0.040 4.040 27 O -0.308 6.308 28 H 0.060 0.940 29 H 0.208 0.792 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.169 0.831 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.165 0.835 40 H 0.176 0.824 41 H 0.194 0.806 42 H 0.153 0.847 43 H 0.107 0.893 44 H 0.146 0.854 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.378 -30.568 -4.824 31.410 hybrid contribution 0.131 1.334 -0.589 1.464 sum -5.247 -29.234 -5.413 30.190 Atomic orbital electron populations 1.69841 1.06659 1.26036 1.59417 1.25611 0.96481 1.01199 1.03578 0.85019 0.78155 0.79502 0.76736 1.19077 1.21826 1.21912 1.19689 0.91539 0.85265 1.41340 0.90578 1.42391 1.05724 1.00741 1.89304 1.20764 0.93175 0.84180 0.98662 1.22407 0.92286 0.93827 0.88212 0.93063 1.22013 0.91870 0.85374 1.03667 1.48332 1.35429 1.20221 1.31247 1.22205 0.85888 0.83694 0.81272 1.90685 1.41691 1.78665 1.32834 1.21108 0.99777 0.86173 0.91797 1.56837 1.67212 1.36778 1.21194 1.22438 0.98208 1.04530 0.80026 1.22818 1.01588 0.91621 1.00488 1.30645 1.14143 1.08053 1.16372 1.06896 0.73332 0.75141 0.79697 1.93597 1.40074 1.79833 1.85798 1.93571 1.73812 1.69558 1.61213 1.22699 0.93161 0.99636 0.89649 1.23175 0.90058 0.86567 1.04159 1.88110 1.47454 1.53125 1.42154 0.93952 0.79181 0.95475 0.94174 0.90307 0.89323 0.83099 0.85946 0.87012 0.89324 0.90179 0.83519 0.82383 0.80647 0.84659 0.89326 0.85427 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 7 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 9 N -0.74 -39.58 5.50 -343.46 -1.89 -41.46 16 10 C 0.16 6.76 5.95 86.38 0.51 7.27 16 11 C 0.09 3.18 2.86 30.69 0.09 3.26 16 12 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 13 C 0.09 2.81 5.93 86.35 0.51 3.32 16 14 N -0.62 -14.76 3.03 -818.16 -2.48 -17.23 16 15 C 0.48 11.87 7.78 87.66 0.68 12.55 16 16 O -0.56 -18.59 15.90 -3.02 -0.05 -18.64 16 17 C 0.14 2.09 5.21 85.63 0.45 2.53 16 18 N -0.98 -15.03 2.80 -516.09 -1.45 -16.48 16 19 C 0.07 0.60 6.83 86.72 0.59 1.19 16 20 C -0.13 -0.74 6.81 31.94 0.22 -0.53 16 21 C -0.56 -3.18 7.51 72.88 0.55 -2.64 16 22 S 2.55 45.22 6.17 -56.49 -0.35 44.87 16 23 O -1.00 -29.02 18.13 -127.76 -2.32 -31.34 16 24 O -0.99 -22.35 18.14 -127.76 -2.32 -24.67 16 25 C 0.07 1.14 6.51 86.22 0.56 1.71 16 26 C 0.04 0.81 6.97 71.94 0.50 1.31 16 27 O -0.39 -13.36 10.14 -148.98 -1.51 -14.88 16 28 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.38 21.51 7.55 -92.71 -0.70 20.81 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 33 H 0.09 2.84 7.08 -2.39 -0.02 2.83 16 34 H 0.15 1.01 7.65 -2.39 -0.02 0.99 16 35 H 0.12 1.46 8.03 -2.39 -0.02 1.44 16 36 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.15 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.16 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.18 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.14 0.96 6.05 -2.39 -0.01 0.94 16 43 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -93.44 379.94 -3.77 -97.21 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.31 Total: 21.36 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 5.97 Total: 12.48 kcal Atomic # 7 Polarization: -130.02 SS G_CDS: -5.53 Total: -135.54 kcal Atomic # 8 Polarization: -83.34 SS G_CDS: -6.19 Total: -89.53 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Atomic # 16 Polarization: 45.22 SS G_CDS: -0.35 Total: 44.87 kcal Total: -93.44 -3.77 -97.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673279996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.756 kcal (2) G-P(sol) polarization free energy of solvation -93.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds