Wall clock time and date at job start Wed Apr 1 2020 04:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00317 * 2 1 4 4 H 1.48501 * 109.46791 * 239.99722 * 3 2 1 5 5 H 1.48500 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47223 * 119.99829 * 3 2 1 7 7 C 1.38816 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00436 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99532 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99976 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47218 * 180.02562 * 10 9 7 12 12 H 1.09009 * 110.05462 * 53.58664 * 11 10 9 13 13 C 1.54266 * 110.03283 * 292.17387 * 11 10 9 14 14 C 1.54899 * 104.19319 * 217.10138 * 13 11 10 15 15 C 1.54891 * 102.74611 * 37.94376 * 14 13 11 16 16 C 1.53869 * 110.03436 * 175.00295 * 11 10 9 17 17 H 1.09001 * 110.03290 * 238.57680 * 16 11 10 18 18 N 1.46508 * 110.03177 * 0.02562 * 16 11 10 19 19 C 1.34774 * 119.99940 * 203.62160 * 18 16 11 20 20 O 1.21578 * 120.00129 * 359.97438 * 19 18 16 21 21 C 1.47513 * 119.99746 * 180.02562 * 19 18 16 22 22 C 1.36826 * 126.94174 * 179.70732 * 21 19 18 23 23 C 1.41266 * 103.84095 * 179.90751 * 22 21 19 24 24 C 1.50700 * 126.69951 * 180.13126 * 23 22 21 25 25 F 1.39905 * 109.47220 * 185.25374 * 24 23 22 26 26 F 1.39900 * 109.47161 * 305.24791 * 24 23 22 27 27 F 1.39899 * 109.47799 * 65.25167 * 24 23 22 28 28 N 1.30127 * 106.59343 * 0.35861 * 23 22 21 29 29 O 1.20878 * 111.98078 * 359.76964 * 28 23 22 30 30 H 0.97000 * 119.99711 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00194 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46468 * 60.00438 * 10 9 7 33 33 H 1.08998 * 109.47308 * 300.00803 * 10 9 7 34 34 H 1.08998 * 110.48811 * 98.43123 * 13 11 10 35 35 H 1.08993 * 110.60227 * 335.83150 * 13 11 10 36 36 H 1.08997 * 110.75810 * 279.62763 * 14 13 11 37 37 H 1.08994 * 110.75501 * 156.25337 * 14 13 11 38 38 H 1.09000 * 110.48374 * 203.37774 * 15 14 13 39 39 H 1.08997 * 110.60279 * 80.78868 * 15 14 13 40 40 H 0.96994 * 119.99335 * 23.62024 * 18 16 11 41 41 H 1.07992 * 128.07814 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6569 0.0016 11 6 1.0638 -4.8197 0.0022 12 1 0.3585 -4.7090 -0.8216 13 6 0.3051 -4.8656 1.3447 14 6 0.1424 -6.3779 1.6375 15 6 1.4879 -6.9678 1.1467 16 6 1.8157 -6.1562 -0.1237 17 1 1.4756 -6.6941 -1.0086 18 7 3.2584 -5.9146 -0.2058 19 6 4.0633 -6.8300 -0.7808 20 8 3.5923 -7.8565 -1.2309 21 6 5.5160 -6.5869 -0.8629 22 6 6.4589 -7.4155 -1.4073 23 6 7.6707 -6.7117 -1.2290 24 6 9.0452 -7.1638 -1.6505 25 9 9.9982 -6.2473 -1.1931 26 9 9.3098 -8.4238 -1.1033 27 9 9.1036 -7.2398 -3.0462 28 7 7.3689 -5.5991 -0.6254 29 8 6.1826 -5.5074 -0.4122 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0016 32 1 2.6853 -3.7142 0.8912 33 1 2.6841 -3.7150 -0.8887 34 1 -0.6702 -4.3887 1.2482 35 1 0.8875 -4.3854 2.1309 36 1 -0.6911 -6.7936 1.0712 37 1 0.0107 -6.5527 2.7052 38 1 1.3757 -8.0249 0.9057 39 1 2.2645 -6.8292 1.8988 40 1 3.6341 -5.0958 0.1536 41 1 6.3110 -8.3811 -1.8677 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716063286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:54 Heat of formation + Delta-G solvation = -106.967803 kcal Electronic energy + Delta-G solvation = -30391.508412 eV Core-core repulsion = 25474.500230 eV Total energy + Delta-G solvation = -4917.008181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.69398 -48.21519 -48.18487 -45.82725 -40.36311 -38.25333 -35.25947 -34.45066 -33.95319 -32.60784 -31.48512 -28.68308 -27.91931 -27.75529 -24.81728 -24.35441 -23.58869 -22.58364 -21.44662 -20.62281 -19.55980 -19.23491 -19.22574 -18.84123 -18.29030 -17.62185 -17.25419 -16.61879 -16.16786 -15.34755 -15.14528 -15.04327 -15.00137 -14.79956 -14.59487 -14.58679 -14.37408 -14.30978 -14.26847 -13.86658 -13.66051 -13.13127 -13.03063 -12.99945 -12.51105 -12.31053 -11.81820 -11.48188 -11.44119 -10.93805 -10.91679 -10.88195 -10.67063 -10.59575 -10.48219 -10.40486 -10.36425 -10.03990 -9.74508 -9.28271 -8.92362 -6.99955 -5.82145 -3.11555 0.20723 0.98515 1.69574 2.05445 2.61166 2.76944 2.86274 3.27550 3.41357 3.46299 3.46732 3.75759 4.00271 4.10993 4.36849 4.47264 4.55530 4.65611 4.68213 4.98065 5.07631 5.33347 5.46100 5.46983 5.55978 5.61703 5.74542 5.80357 5.94555 5.97179 6.12501 6.17730 6.34382 6.36527 6.50352 6.58378 6.70472 7.00483 7.29106 7.63911 7.71007 8.36243 9.48082 10.03846 10.38392 11.40358 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009695 B = 0.002901 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.519650 B = 9649.867375 C =12101.979557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.727 5.727 10 C 0.154 3.846 11 C -0.108 4.108 12 H 0.086 0.914 13 C -0.112 4.112 14 C -0.124 4.124 15 C -0.133 4.133 16 C 0.147 3.853 17 H 0.096 0.904 18 N -0.699 5.699 19 C 0.603 3.397 20 O -0.510 6.510 21 C -0.064 4.064 22 C -0.114 4.114 23 C -0.091 4.091 24 C 0.561 3.439 25 F -0.161 7.161 26 F -0.161 7.161 27 F -0.161 7.161 28 N -0.285 5.285 29 O 0.161 5.839 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.019 0.981 33 H 0.021 0.979 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.416 0.584 41 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.192 -19.125 -0.388 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.371 5.371 10 C 0.026 3.974 11 C -0.127 4.127 12 H 0.105 0.895 13 C -0.150 4.150 14 C -0.162 4.162 15 C -0.171 4.171 16 C 0.043 3.957 17 H 0.114 0.886 18 N -0.352 5.352 19 C 0.385 3.615 20 O -0.386 6.386 21 C -0.129 4.129 22 C -0.137 4.137 23 C -0.249 4.249 24 C 0.506 3.494 25 F -0.142 7.142 26 F -0.143 7.143 27 F -0.142 7.142 28 N 0.026 4.974 29 O 0.073 5.927 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.256 0.744 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 11.808 -18.699 -0.321 22.117 hybrid contribution 0.424 0.683 -0.270 0.848 sum 12.233 -18.016 -0.591 21.784 Atomic orbital electron populations 1.69643 1.05123 1.25874 1.57367 1.24733 0.95504 0.97707 1.02732 0.86282 0.78563 0.83502 0.77918 1.21232 1.21665 1.21188 1.19169 0.91008 0.84113 1.43253 0.91194 1.42284 1.05860 0.99603 1.89378 1.20710 0.93416 0.85836 0.97448 1.22241 0.98026 0.93050 0.99401 0.89542 1.22372 1.00948 0.95128 0.96544 1.22491 0.96598 0.96260 1.00863 1.22783 0.98186 0.99425 0.96752 1.21864 0.77564 0.96820 0.99442 0.88621 1.46393 1.08599 1.22091 1.58097 1.16420 0.81416 0.84336 0.79330 1.90886 1.73201 1.26331 1.48169 1.24506 0.96181 0.88663 1.03571 1.22643 0.87752 1.02424 1.00867 1.23425 0.96548 0.95997 1.08907 1.16575 0.82195 0.75379 0.75297 1.93276 1.65961 1.66340 1.88656 1.93271 1.94394 1.41042 1.85552 1.93281 1.96530 1.96034 1.28375 1.73884 0.94875 1.17351 1.11303 1.85095 1.12728 1.37037 1.57815 0.93397 0.78086 0.96325 0.96135 0.90999 0.90840 0.91397 0.91446 0.91164 0.91079 0.74437 0.78470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.54 9.99 -15.05 -0.15 -6.69 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.73 -17.11 5.45 -59.91 -0.33 -17.43 16 10 C 0.15 2.72 4.18 -4.04 -0.02 2.70 16 11 C -0.11 -1.52 2.96 -89.51 -0.26 -1.78 16 12 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 13 C -0.11 -1.50 6.08 -25.07 -0.15 -1.65 16 14 C -0.12 -1.30 6.91 -24.73 -0.17 -1.47 16 15 C -0.13 -1.40 6.53 -25.07 -0.16 -1.56 16 16 C 0.15 1.75 3.20 -66.81 -0.21 1.53 16 17 H 0.10 1.16 7.61 -51.93 -0.40 0.77 16 18 N -0.70 -8.08 4.42 -53.77 -0.24 -8.32 16 19 C 0.60 7.08 7.81 -12.48 -0.10 6.99 16 20 O -0.51 -7.03 16.59 5.30 0.09 -6.94 16 21 C -0.06 -0.67 7.29 -36.31 -0.26 -0.94 16 22 C -0.11 -1.07 10.92 -38.94 -0.43 -1.49 16 23 C -0.09 -0.95 6.58 -82.16 -0.54 -1.49 16 24 C 0.56 5.33 3.53 36.01 0.13 5.46 16 25 F -0.16 -1.70 17.17 2.25 0.04 -1.66 16 26 F -0.16 -1.43 17.30 2.25 0.04 -1.39 16 27 F -0.16 -1.51 17.30 2.25 0.04 -1.47 16 28 N -0.28 -3.39 11.86 33.52 0.40 -2.99 16 29 O 0.16 1.81 11.04 15.55 0.17 1.98 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.39 9.59 7.55 -40.82 -0.31 9.28 16 32 H 0.02 0.33 7.12 -51.93 -0.37 -0.04 16 33 H 0.02 0.37 7.40 -51.93 -0.38 -0.01 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.07 7.77 -51.93 -0.40 0.67 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 40 H 0.42 4.75 5.66 -40.82 -0.23 4.52 16 41 H 0.20 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -30.08 362.61 -5.65 -35.73 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -4.59 Total: 7.55 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -2.43 Total: -0.78 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.56 Total: -55.35 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: 0.26 Total: -4.96 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.12 Total: -4.52 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.08 -5.65 -35.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716063286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.241 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds