Wall clock time and date at job start Wed Apr 1 2020 04:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00028 * 2 1 4 4 H 1.48492 * 109.46762 * 239.99916 * 3 2 1 5 5 H 1.48498 * 109.46764 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46812 * 120.00038 * 3 2 1 7 7 C 1.38813 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99840 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99924 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47343 * 180.02562 * 10 9 7 12 12 O 1.42903 * 109.46279 * 299.97653 * 11 10 9 13 13 C 1.53043 * 109.46433 * 180.02562 * 11 10 9 14 14 C 1.53185 * 109.31401 * 178.62735 * 13 11 10 15 15 N 1.46923 * 108.77687 * 54.63736 * 14 13 11 16 16 C 1.34778 * 120.63230 * 126.36655 * 15 14 13 17 17 O 1.21273 * 119.99956 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00072 * 180.02562 * 16 15 14 19 19 H 1.09004 * 109.34606 * 320.28456 * 18 16 15 20 20 C 1.54062 * 109.35637 * 79.99665 * 18 16 15 21 21 C 1.55604 * 104.40647 * 165.31712 * 20 18 16 22 22 S 1.83591 * 100.66600 * 322.22240 * 21 20 18 23 23 O 1.42096 * 111.14588 * 270.58327 * 22 21 20 24 24 O 1.42101 * 111.42834 * 131.40060 * 22 21 20 25 25 N 1.47063 * 109.35659 * 200.63955 * 18 16 15 26 26 C 1.46928 * 118.73696 * 306.64410 * 15 14 13 27 27 C 1.52759 * 109.01222 * 53.30670 * 26 15 14 28 28 H 0.96995 * 119.99968 * 0.02562 * 1 2 3 29 29 H 0.96993 * 120.00182 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.46896 * 60.00292 * 10 9 7 31 31 H 1.09007 * 109.47491 * 300.00381 * 10 9 7 32 32 H 0.96703 * 113.99782 * 60.01599 * 12 11 10 33 33 H 1.09003 * 109.49459 * 58.68120 * 13 11 10 34 34 H 1.08997 * 109.52444 * 298.59896 * 13 11 10 35 35 H 1.09000 * 109.58781 * 294.85142 * 14 13 11 36 36 H 1.09002 * 109.70426 * 174.49423 * 14 13 11 37 37 H 1.09002 * 110.47007 * 284.08585 * 20 18 16 38 38 H 1.08997 * 110.46683 * 46.54881 * 20 18 16 39 39 H 1.08996 * 111.16854 * 80.01320 * 21 20 18 40 40 H 1.09008 * 111.16328 * 204.28068 * 21 20 18 41 41 H 0.97003 * 126.30064 * 30.74796 * 25 18 16 42 42 H 1.09005 * 109.58570 * 173.14180 * 26 15 14 43 43 H 1.09005 * 109.58676 * 293.56422 * 26 15 14 44 44 H 1.08997 * 109.56667 * 185.55522 * 27 26 15 45 45 H 1.09002 * 109.38342 * 65.51236 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 8 0.2432 -4.7450 1.1654 13 6 1.8293 -6.1450 -0.0026 14 6 0.8312 -7.3066 0.0316 15 7 -0.1111 -7.1535 -1.0853 16 6 -0.3085 -8.1598 -1.9599 17 8 0.2940 -9.2041 -1.8289 18 6 -1.2779 -7.9872 -3.1008 19 1 -2.1555 -7.4441 -2.7499 20 6 -0.6005 -7.1876 -4.2300 21 6 -1.5244 -7.4013 -5.4637 22 16 -2.0067 -9.1568 -5.2271 23 8 -1.0877 -10.0316 -5.8668 24 8 -3.4117 -9.3303 -5.3504 25 7 -1.6900 -9.3097 -3.5946 26 6 -0.8294 -5.8805 -1.2342 27 6 0.1832 -4.7368 -1.2510 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6853 -3.7150 0.8879 31 1 2.6841 -3.7142 -0.8922 32 1 -0.2720 -3.9293 1.2325 33 1 2.4737 -6.1932 0.8752 34 1 2.4372 -6.2142 -0.9046 35 1 0.2852 -7.2915 0.9749 36 1 1.3642 -8.2522 -0.0670 37 1 -0.5493 -6.1302 -3.9707 38 1 0.3972 -7.5791 -4.4286 39 1 -2.3942 -6.7458 -5.4222 40 1 -0.9750 -7.2644 -6.3952 41 1 -1.7637 -10.1216 -3.0689 42 1 -1.3898 -5.8843 -2.1691 43 1 -1.5136 -5.7468 -0.3962 44 1 -0.3439 -3.7828 -1.2618 45 1 0.8063 -4.8184 -2.1416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717324952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:26 Heat of formation + Delta-G solvation = -126.724795 kcal Electronic energy + Delta-G solvation = -29840.873123 eV Core-core repulsion = 25600.308905 eV Total energy + Delta-G solvation = -4240.564217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.84313 -38.91606 -37.38441 -36.88064 -36.19744 -35.73294 -34.10819 -32.28204 -32.06934 -31.39575 -30.49142 -27.88549 -26.42086 -24.07950 -23.51811 -23.09418 -21.85643 -20.51800 -20.01157 -19.23494 -18.21773 -17.89331 -17.56119 -16.72766 -16.32309 -16.08145 -15.78318 -15.40859 -15.17807 -15.02248 -14.51401 -14.43217 -14.34444 -14.06983 -13.78863 -13.52622 -13.32488 -12.97927 -12.90690 -12.65924 -12.49283 -12.44953 -12.30822 -12.29020 -12.09111 -11.90855 -11.67681 -11.22654 -11.18605 -11.11490 -10.99683 -10.90133 -10.42442 -10.35988 -10.24505 -9.80614 -9.73651 -9.52565 -9.03126 -8.75913 -7.10989 -5.92868 -3.22117 -0.17115 2.05548 2.28138 2.74767 3.19617 3.34878 3.40238 3.40444 3.42935 3.81679 3.97438 4.12885 4.32451 4.41188 4.45896 4.59348 4.68004 4.80503 4.87484 4.96857 4.99234 5.04025 5.11193 5.22334 5.27711 5.40200 5.43474 5.50481 5.66530 5.75123 5.84334 5.90355 5.98605 6.15575 6.24825 6.39847 6.55622 6.59435 6.68393 7.15857 7.56417 7.85502 7.96361 8.26221 9.37093 9.89656 10.23736 11.29736 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017246 B = 0.002572 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.194176 B =10881.964131 C =11878.286508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.128 3.872 11 C 0.130 3.870 12 O -0.560 6.560 13 C -0.117 4.117 14 C 0.118 3.882 15 N -0.601 5.601 16 C 0.516 3.484 17 O -0.529 6.529 18 C 0.094 3.906 19 H 0.109 0.891 20 C -0.123 4.123 21 C -0.593 4.593 22 S 2.577 3.423 23 O -0.954 6.954 24 O -0.955 6.955 25 N -1.083 6.083 26 C 0.103 3.897 27 C -0.159 4.159 28 H 0.257 0.743 29 H 0.380 0.620 30 H 0.029 0.971 31 H 0.026 0.974 32 H 0.383 0.617 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.439 0.561 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.365 -14.941 -7.459 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.000 4.000 11 C 0.089 3.911 12 O -0.368 6.368 13 C -0.156 4.156 14 C -0.004 4.004 15 N -0.334 5.334 16 C 0.301 3.699 17 O -0.405 6.405 18 C -0.019 4.019 19 H 0.127 0.873 20 C -0.163 4.163 21 C -0.723 4.723 22 S 2.671 3.329 23 O -0.943 6.943 24 O -0.944 6.944 25 N -0.850 5.850 26 C -0.019 4.019 27 C -0.198 4.198 28 H 0.067 0.933 29 H 0.214 0.786 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.233 0.767 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.141 0.859 38 H 0.122 0.878 39 H 0.166 0.834 40 H 0.166 0.834 41 H 0.280 0.720 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.113 0.887 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.024 -16.625 -7.954 18.864 hybrid contribution 0.196 2.072 0.437 2.127 sum -3.828 -14.553 -7.517 16.821 Atomic orbital electron populations 1.69609 1.05087 1.26044 1.57515 1.24723 0.95565 0.97743 1.02616 0.86246 0.78558 0.83321 0.77919 1.21237 1.21622 1.21198 1.19146 0.91063 0.83954 1.43194 0.91200 1.42264 1.05473 0.99990 1.89772 1.21314 0.93892 0.85982 0.98768 1.21280 0.90464 0.94860 0.84514 1.86381 1.61548 1.45165 1.43675 1.21855 0.97528 0.92771 1.03406 1.21578 0.90934 0.99168 0.88735 1.48158 1.43157 1.14185 1.27903 1.20230 0.83033 0.83880 0.82747 1.90717 1.48672 1.27187 1.73904 1.21698 0.98763 0.85714 0.95683 0.87307 1.22701 0.99569 1.04048 0.89989 1.30858 1.10579 1.24217 1.06694 1.06202 0.74976 0.77969 0.73728 1.93640 1.64754 1.61608 1.74344 1.93644 1.30932 1.84930 1.84932 1.55003 1.85573 1.15012 1.29423 1.21831 0.94927 0.82508 1.02650 1.22503 0.98791 0.98936 0.99552 0.93319 0.78557 0.95315 0.95661 0.76728 0.89808 0.90385 0.90332 0.89226 0.85861 0.87772 0.83431 0.83367 0.71999 0.89989 0.90038 0.88699 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.90 13.06 55.49 0.72 -25.18 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.20 29.55 -169.99 -5.02 16.17 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.27 9.99 -15.05 -0.15 -6.42 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.73 -16.12 5.07 -59.91 -0.30 -16.42 16 10 C 0.13 2.28 5.40 -4.05 -0.02 2.25 16 11 C 0.13 1.77 0.71 -90.58 -0.06 1.70 16 12 O -0.56 -8.11 11.71 -35.23 -0.41 -8.52 16 13 C -0.12 -1.38 5.11 -26.61 -0.14 -1.52 16 14 C 0.12 1.33 6.20 -3.72 -0.02 1.31 16 15 N -0.60 -6.22 2.98 -173.03 -0.52 -6.73 16 16 C 0.52 5.63 6.92 -10.98 -0.08 5.56 16 17 O -0.53 -7.58 15.83 5.56 0.09 -7.49 16 18 C 0.09 0.73 2.56 -68.22 -0.17 0.55 16 19 H 0.11 0.59 6.79 -51.93 -0.35 0.24 16 20 C -0.12 -0.73 5.82 -24.79 -0.14 -0.87 16 21 C -0.59 -2.72 7.53 38.54 0.29 -2.43 16 22 S 2.58 21.90 6.50 -107.50 -0.70 21.20 16 23 O -0.95 -11.82 18.13 -57.43 -1.04 -12.86 16 24 O -0.96 -11.03 18.14 -57.43 -1.04 -12.07 16 25 N -1.08 -9.36 6.31 -5.08 -0.03 -9.39 16 26 C 0.10 0.94 5.77 -3.93 -0.02 0.92 16 27 C -0.16 -1.86 4.91 -26.83 -0.13 -1.99 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.38 8.46 5.58 -40.82 -0.23 8.23 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.38 5.59 7.85 45.56 0.36 5.95 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.92 7.81 -51.93 -0.41 0.52 16 36 H 0.09 1.05 7.00 -51.93 -0.36 0.69 16 37 H 0.12 0.54 6.98 -51.93 -0.36 0.18 16 38 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.15 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.15 0.43 8.14 -51.92 -0.42 0.01 16 41 H 0.44 3.78 8.76 -40.34 -0.35 3.42 16 42 H 0.08 0.51 4.59 -51.93 -0.24 0.27 16 43 H 0.08 0.77 7.81 -51.93 -0.41 0.36 16 44 H 0.09 1.28 6.82 -51.93 -0.35 0.92 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -36.18 366.23 -9.12 -45.29 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -5.63 Total: 11.79 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.75 Total: -1.31 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.13 Total: -57.72 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -2.41 Total: -40.95 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 21.90 SS G_CDS: -0.70 Total: 21.20 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.18 -9.12 -45.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717324952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.431 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds