Wall clock time and date at job start Wed Apr 1 2020 04:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00341 * 2 1 4 4 H 1.48500 * 109.46991 * 269.99946 * 3 2 1 5 5 H 1.48496 * 109.46961 * 29.99944 * 3 2 1 6 6 H 1.48497 * 109.46962 * 149.99860 * 3 2 1 7 7 C 1.38818 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99948 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99926 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47249 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.43124 * 52.46076 * 11 10 9 13 13 C 1.54889 * 110.59962 * 289.84442 * 11 10 9 14 14 C 1.54888 * 102.74742 * 203.32462 * 13 11 10 15 15 C 1.54266 * 104.19754 * 37.94093 * 14 13 11 16 16 H 1.09002 * 110.07147 * 217.08827 * 15 14 13 17 17 N 1.46492 * 110.03052 * 95.67674 * 15 14 13 18 18 C 1.34777 * 120.00328 * 87.83577 * 17 15 14 19 19 O 1.21610 * 119.99724 * 359.97438 * 18 17 15 20 20 C 1.47422 * 120.00406 * 180.02562 * 18 17 15 21 21 C 1.36084 * 126.45255 * 179.97438 * 20 18 17 22 22 O 1.34252 * 106.95334 * 179.97438 * 21 20 18 23 23 C 1.34054 * 108.22471 * 359.97438 * 22 21 20 24 24 C 1.50703 * 125.37468 * 180.02562 * 23 22 21 25 25 F 1.39901 * 109.47197 * 269.97603 * 24 23 22 26 26 F 1.39896 * 109.47156 * 29.97821 * 24 23 22 27 27 F 1.39898 * 109.46555 * 149.98000 * 24 23 22 28 28 N 1.29936 * 109.24429 * 0.02562 * 23 22 21 29 29 C 1.53877 * 106.59685 * 336.39302 * 15 14 13 30 30 H 0.97001 * 119.99676 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00447 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46920 * 60.00311 * 10 9 7 33 33 H 1.08997 * 109.47202 * 300.00253 * 10 9 7 34 34 H 1.09006 * 110.75381 * 321.63590 * 13 11 10 35 35 H 1.08998 * 110.75581 * 85.00751 * 13 11 10 36 36 H 1.08998 * 110.48405 * 279.26070 * 14 13 11 37 37 H 1.09001 * 110.48431 * 156.62492 * 14 13 11 38 38 H 0.97010 * 120.00181 * 267.83383 * 17 15 14 39 39 H 1.08000 * 126.52429 * 359.97438 * 21 20 18 40 40 H 1.08992 * 110.03187 * 119.28866 * 29 15 14 41 41 H 1.09000 * 110.02964 * 240.71552 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 6 1.0637 -4.8198 -0.0021 12 1 0.3431 -4.7040 -0.8116 13 6 0.3360 -4.9151 1.3619 14 6 -0.1150 -6.3962 1.4060 15 6 1.0576 -7.1679 0.7661 16 1 0.6779 -7.9941 0.1650 17 7 1.9523 -7.6760 1.8088 18 6 1.7175 -8.8780 2.3714 19 8 0.7625 -9.5406 2.0138 20 6 2.6175 -9.3891 3.4211 21 6 2.5048 -10.5774 4.0748 22 8 3.5260 -10.6447 4.9436 23 6 4.2509 -9.5231 4.8263 24 6 5.4883 -9.1968 5.6222 25 9 5.1258 -8.5172 6.7901 26 9 6.1521 -10.3814 5.9589 27 9 6.3355 -8.3888 4.8564 28 7 3.7180 -8.7619 3.9181 29 6 1.8070 -6.1655 -0.1291 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6853 -3.7150 0.8878 33 1 2.6840 -3.7143 -0.8921 34 1 1.0206 -4.6952 2.1812 35 1 -0.5256 -4.2480 1.3875 36 1 -1.0260 -6.5350 0.8238 37 1 -0.2667 -6.7182 2.4362 38 1 2.7139 -7.1474 2.0944 39 1 1.7394 -11.3241 3.9234 40 1 2.8364 -6.0573 0.2122 41 1 1.7903 -6.5049 -1.1648 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725622871.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:32 Heat of formation + Delta-G solvation = -176.121350 kcal Electronic energy + Delta-G solvation = -29801.162008 eV Core-core repulsion = 24881.155104 eV Total energy + Delta-G solvation = -4920.006904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.53427 -49.04808 -49.04205 -44.99174 -41.08953 -39.22029 -36.51987 -36.46766 -34.70487 -33.01258 -32.62077 -30.15034 -29.26977 -28.07903 -26.42217 -25.34203 -23.91407 -23.50662 -22.37189 -21.25592 -20.91707 -20.22485 -20.01998 -19.70548 -19.07096 -18.68618 -18.13966 -17.62630 -17.45910 -16.70226 -16.49152 -15.89931 -15.84256 -15.76069 -15.71378 -15.40868 -15.34192 -15.13457 -15.12320 -15.00752 -14.96030 -14.57713 -14.29995 -14.15330 -13.48381 -13.16587 -13.02851 -12.80693 -12.70954 -12.54888 -12.47219 -12.18034 -12.07677 -11.89510 -11.61783 -11.53831 -11.49725 -11.36951 -10.90006 -10.76384 -10.15098 -8.97369 -7.94409 -5.22482 -0.39304 0.27820 0.28120 1.38218 1.47397 1.49084 1.57540 1.88933 1.98217 2.05556 2.56760 2.84255 2.89153 3.17228 3.39047 3.40233 3.57289 3.60868 3.85510 3.91013 4.15676 4.23009 4.33919 4.44262 4.51733 4.52455 4.60821 4.68016 4.76983 4.92289 4.98366 5.08068 5.15210 5.23250 5.36818 5.46894 5.51482 5.56654 5.73854 6.28476 6.36546 6.95341 7.34665 8.12456 8.35155 9.29324 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.002255 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.737020 B =12413.154016 C =14204.235348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.244 4.244 8 H 0.074 0.926 9 N -0.745 5.745 10 C 0.159 3.841 11 C -0.091 4.091 12 H 0.072 0.928 13 C -0.109 4.109 14 C -0.123 4.123 15 C 0.148 3.852 16 H 0.098 0.902 17 N -0.697 5.697 18 C 0.605 3.395 19 O -0.555 6.555 20 C -0.098 4.098 21 C 0.089 3.911 22 O -0.162 6.162 23 C 0.090 3.910 24 C 0.594 3.406 25 F -0.153 7.153 26 F -0.150 7.150 27 F -0.145 7.145 28 N -0.406 5.406 29 C -0.112 4.112 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.413 0.587 39 H 0.285 0.715 40 H 0.081 0.919 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.668 -28.071 10.899 31.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.376 4.376 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.033 3.967 11 C -0.110 4.110 12 H 0.090 0.910 13 C -0.147 4.147 14 C -0.162 4.162 15 C 0.044 3.956 16 H 0.116 0.884 17 N -0.347 5.347 18 C 0.390 3.610 19 O -0.434 6.434 20 C -0.220 4.220 21 C 0.015 3.985 22 O -0.045 6.045 23 C -0.121 4.121 24 C 0.538 3.462 25 F -0.134 7.134 26 F -0.131 7.131 27 F -0.126 7.126 28 N -0.138 5.138 29 C -0.150 4.150 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.250 0.750 39 H 0.300 0.700 40 H 0.099 0.901 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.474 -27.845 10.509 30.945 hybrid contribution 0.124 1.074 0.395 1.151 sum 8.599 -26.771 10.904 30.159 Atomic orbital electron populations 1.69819 1.06601 1.26022 1.59679 1.25567 0.96407 1.01100 1.03855 0.85147 0.77714 0.79513 0.77454 1.21362 1.22218 1.19446 1.19648 0.91480 0.85513 1.40967 0.90770 1.42575 1.05662 1.01194 1.89282 1.20864 0.93751 0.84717 0.97400 1.22056 0.97155 0.93839 0.97928 0.90978 1.22412 0.99471 0.96070 0.96742 1.22719 0.98210 0.94194 1.01065 1.21664 0.89576 0.96550 0.87857 0.88384 1.46068 1.30867 1.18615 1.39105 1.16708 0.82828 0.81497 0.79950 1.90840 1.30219 1.58871 1.63482 1.21954 0.98006 0.96573 1.05427 1.26484 0.88564 0.98520 0.84973 1.84460 1.32295 1.37582 1.50131 1.25527 0.99306 0.85546 1.01699 1.15829 0.78676 0.75325 0.76366 1.93335 1.91495 1.80108 1.48493 1.93319 1.81294 1.46151 1.92376 1.93335 1.70715 1.73198 1.75358 1.70606 1.06809 1.29534 1.06852 1.22371 0.99526 0.92392 1.00705 0.94041 0.79417 0.96277 0.96264 0.92447 0.93078 0.89872 0.91822 0.75040 0.69958 0.90063 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 3 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -37.99 5.49 -343.44 -1.89 -39.88 16 10 C 0.16 6.20 5.55 86.38 0.48 6.68 16 11 C -0.09 -2.74 2.88 -9.72 -0.03 -2.76 16 12 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 13 C -0.11 -3.27 6.20 31.88 0.20 -3.07 16 14 C -0.12 -2.96 6.54 31.67 0.21 -2.76 16 15 C 0.15 3.16 3.25 45.72 0.15 3.31 16 16 H 0.10 2.07 7.56 -2.39 -0.02 2.06 16 17 N -0.70 -14.35 5.03 -442.37 -2.22 -16.57 16 18 C 0.60 12.77 7.81 86.66 0.68 13.45 16 19 O -0.56 -13.89 16.54 -4.06 -0.07 -13.95 16 20 C -0.10 -1.70 6.99 40.41 0.28 -1.42 16 21 C 0.09 0.95 11.94 67.32 0.80 1.75 16 22 O -0.16 -2.01 10.70 0.39 0.00 -2.00 16 23 C 0.09 1.41 7.53 88.39 0.67 2.08 16 24 C 0.59 8.40 3.57 71.24 0.25 8.65 16 25 F -0.15 -2.29 17.30 44.97 0.78 -1.51 16 26 F -0.15 -1.89 17.28 44.97 0.78 -1.11 16 27 F -0.15 -2.33 17.23 44.97 0.77 -1.55 16 28 N -0.41 -7.69 10.96 -293.03 -3.21 -10.90 16 29 C -0.11 -2.47 6.14 31.32 0.19 -2.27 16 30 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.37 20.29 7.64 -92.71 -0.71 19.58 16 32 H 0.02 0.75 8.03 -2.39 -0.02 0.74 16 33 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.06 1.81 7.98 -2.38 -0.02 1.79 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 1.57 8.04 -2.39 -0.02 1.55 16 38 H 0.41 8.16 8.05 -92.70 -0.75 7.42 16 39 H 0.29 0.58 8.06 -2.91 -0.02 0.56 16 40 H 0.08 1.72 7.31 -2.39 -0.02 1.70 16 41 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -69.80 367.87 2.10 -67.70 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -0.34 Total: 24.24 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 5.19 Total: 6.68 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -7.04 Total: -127.05 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.06 Total: -15.96 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 2.33 Total: -4.18 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -69.80 2.10 -67.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725622871.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.420 kcal (2) G-P(sol) polarization free energy of solvation -69.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds