Wall clock time and date at job start Wed Apr 1 2020 04:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 108.58374 * 2 1 4 4 C 1.50706 * 109.46979 * 61.54039 * 3 2 1 5 5 O 1.21275 * 119.99783 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99368 * 180.02562 * 4 3 2 7 7 C 1.46508 * 119.99106 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.46532 * 179.97438 * 7 6 4 9 9 O 1.42897 * 112.94601 * 53.40823 * 8 7 6 10 10 C 1.53953 * 113.74062 * 281.67348 * 8 7 6 11 11 N 1.47580 * 86.11512 * 222.04991 * 10 8 7 12 12 C 1.36934 * 134.49210 * 204.63864 * 11 10 8 13 13 H 1.08000 * 119.99976 * 173.48221 * 12 11 10 14 14 C 1.38813 * 119.99898 * 353.48916 * 12 11 10 15 15 N 1.31611 * 120.00158 * 5.05949 * 14 12 11 16 16 Si 1.86805 * 119.99799 * 185.06465 * 14 12 11 17 17 H 1.48500 * 109.47015 * 94.98537 * 16 14 12 18 18 H 1.48501 * 109.46851 * 214.98050 * 16 14 12 19 19 H 1.48497 * 109.47348 * 334.98473 * 16 14 12 20 20 C 1.47585 * 91.01760 * 24.64171 * 11 10 8 21 21 C 1.53262 * 108.60064 * 242.16886 * 2 1 3 22 22 C 1.55555 * 106.21120 * 266.37422 * 21 2 1 23 23 S 1.83897 * 99.68940 * 323.07769 * 22 21 2 24 24 O 1.42103 * 111.46777 * 144.06273 * 23 22 21 25 25 O 1.42101 * 111.46550 * 283.91327 * 23 22 21 26 26 N 1.46457 * 108.64874 * 117.99507 * 2 1 3 27 27 H 1.09000 * 109.47119 * 303.46009 * 1 2 3 28 28 H 1.09001 * 109.46930 * 63.46070 * 1 2 3 29 29 H 1.08996 * 109.47013 * 183.45671 * 1 2 3 30 30 H 1.08998 * 109.47511 * 181.54475 * 3 2 1 31 31 H 1.09007 * 109.46611 * 301.54140 * 3 2 1 32 32 H 0.96987 * 120.00569 * 359.97438 * 6 4 3 33 33 H 1.09001 * 109.47268 * 299.99373 * 7 6 4 34 34 H 1.08997 * 109.47041 * 60.00288 * 7 6 4 35 35 H 0.96695 * 114.00259 * 309.66411 * 9 8 7 36 36 H 1.08996 * 113.76730 * 336.35236 * 10 8 7 37 37 H 1.09000 * 113.76597 * 107.75293 * 10 8 7 38 38 H 0.96998 * 120.00277 * 180.02562 * 15 14 12 39 39 H 1.08998 * 113.76962 * 221.06272 * 20 11 10 40 40 H 1.08996 * 113.87222 * 89.67279 * 20 11 10 41 41 H 1.09004 * 110.07955 * 147.20818 * 21 2 1 42 42 H 1.08998 * 110.15136 * 25.58042 * 21 2 1 43 43 H 1.09004 * 111.36901 * 205.44685 * 22 21 2 44 44 H 1.09000 * 111.37114 * 80.70703 * 22 21 2 45 45 H 0.96999 * 126.07966 * 299.43273 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0176 1.4503 0.0000 4 6 1.5359 2.1422 1.2492 5 8 0.8687 1.5350 2.0597 6 7 1.8465 3.4357 1.4653 7 6 1.3787 4.1081 2.6800 8 6 1.8662 5.5584 2.6799 9 8 1.5171 6.2634 1.4870 10 6 3.3427 5.7160 3.0863 11 7 2.8967 6.8794 3.8771 12 6 3.5045 8.0168 4.3374 13 1 2.9184 8.7845 4.8207 14 6 4.8739 8.1833 4.1826 15 7 5.5724 7.2960 3.5066 16 14 5.7252 9.6666 4.9340 17 1 6.2777 9.2998 6.2627 18 1 6.8290 10.1074 4.0437 19 1 4.7460 10.7716 5.0930 20 6 1.5325 6.3245 3.9729 21 6 2.0188 -0.6782 -1.2845 22 6 2.2469 -2.1745 -0.9259 23 16 2.9026 -1.9870 0.7819 24 8 2.4602 -3.0400 1.6274 25 8 4.2541 -1.5479 0.7747 26 7 1.9983 -0.6514 1.2253 27 1 -0.3633 0.5666 0.8573 28 1 -0.3633 0.4592 -0.9194 29 1 -0.3633 -1.0258 0.0620 30 1 3.1071 1.4673 -0.0277 31 1 1.6237 1.9659 -0.8759 32 1 2.3804 3.9212 0.8173 33 1 0.2892 4.0907 2.7083 34 1 1.7732 3.5926 3.5556 35 1 1.7518 5.7985 0.6723 36 1 3.7221 4.8927 3.6915 37 1 4.0013 5.9748 2.2572 38 1 6.5293 7.4121 3.3987 39 1 0.7458 7.0691 3.8516 40 1 1.3782 5.6799 4.8381 41 1 2.9539 -0.2253 -1.6143 42 1 1.2638 -0.5910 -2.0659 43 1 2.9831 -2.6334 -1.5859 44 1 1.3101 -2.7318 -0.9327 45 1 1.8159 -0.3604 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733511105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:33 Heat of formation + Delta-G solvation = -118.793596 kcal Electronic energy + Delta-G solvation = -29377.113141 eV Core-core repulsion = 25136.892846 eV Total energy + Delta-G solvation = -4240.220295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.39359 -40.44077 -38.65594 -38.01137 -36.89042 -36.46381 -35.20024 -34.03354 -32.60043 -31.76957 -30.28998 -28.86800 -27.28206 -26.72762 -25.13929 -23.71188 -21.79533 -21.24171 -20.90204 -20.46251 -18.96270 -18.47514 -18.35788 -17.40576 -17.31159 -17.18794 -16.69158 -16.49716 -16.40833 -15.85400 -15.80100 -15.46998 -15.14288 -15.01531 -14.57236 -14.42478 -14.11490 -14.05582 -13.88999 -13.56138 -13.45035 -13.19554 -13.17094 -13.04632 -12.99078 -12.87876 -12.69297 -12.55318 -12.43354 -12.21181 -12.05824 -11.79349 -11.74235 -11.41023 -11.36749 -10.97328 -10.72686 -10.60296 -10.30812 -10.03632 -8.94461 -7.94648 -5.26420 -0.63243 1.43946 1.45892 1.54725 1.69869 1.75994 2.17900 2.44928 2.75114 3.05783 3.09308 3.24650 3.35556 3.40143 3.55690 3.63082 3.73486 3.91391 4.00312 4.10457 4.31818 4.39324 4.55814 4.64913 4.68563 4.76510 4.78022 4.78448 4.81041 4.93663 4.96371 5.00216 5.13299 5.16696 5.29586 5.33515 5.36382 5.48370 5.69523 5.89822 6.28817 6.55583 6.85851 6.89605 7.32143 7.56952 8.51139 9.22621 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.002338 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.287347 B =11972.484505 C =12672.435685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 C -0.149 4.149 4 C 0.513 3.487 5 O -0.566 6.566 6 N -0.721 5.721 7 C 0.120 3.880 8 C 0.101 3.899 9 O -0.539 6.539 10 C 0.146 3.854 11 N -0.636 5.636 12 C -0.236 4.236 13 H 0.081 0.919 14 C -0.065 4.065 15 N -0.950 5.950 16 Si 0.978 3.022 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.268 1.268 20 C 0.127 3.873 21 C -0.116 4.116 22 C -0.548 4.548 23 S 2.544 3.456 24 O -1.015 7.015 25 O -1.001 7.001 26 N -1.088 6.088 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.147 0.853 32 H 0.410 0.590 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.384 0.616 36 H 0.022 0.978 37 H 0.046 0.954 38 H 0.249 0.751 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.116 0.884 42 H 0.152 0.848 43 H 0.172 0.828 44 H 0.164 0.836 45 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.258 -18.913 -18.014 28.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.058 3.942 3 C -0.190 4.190 4 C 0.302 3.698 5 O -0.446 6.446 6 N -0.374 5.374 7 C -0.006 4.006 8 C 0.058 3.942 9 O -0.346 6.346 10 C 0.020 3.980 11 N -0.363 5.363 12 C -0.364 4.364 13 H 0.099 0.901 14 C -0.258 4.258 15 N -0.598 5.598 16 Si 0.806 3.194 17 H -0.215 1.215 18 H -0.219 1.219 19 H -0.192 1.192 20 C 0.002 3.998 21 C -0.155 4.155 22 C -0.684 4.684 23 S 2.644 3.356 24 O -1.005 7.005 25 O -0.991 6.991 26 N -0.856 5.856 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.165 0.835 32 H 0.246 0.754 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.234 0.766 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.134 0.866 42 H 0.170 0.830 43 H 0.190 0.810 44 H 0.182 0.818 45 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -10.967 -19.209 -16.395 27.533 hybrid contribution 0.926 1.046 0.505 1.486 sum -10.040 -18.163 -15.890 26.138 Atomic orbital electron populations 1.22488 0.92952 1.03191 1.03953 1.20635 0.96880 0.92182 0.84505 1.22363 1.04271 0.95661 0.96725 1.21174 0.78760 0.80997 0.88861 1.90582 1.40422 1.65119 1.48491 1.45916 1.55495 1.12382 1.23564 1.21635 0.99985 0.90446 0.88498 1.23090 0.94861 0.89240 0.86966 1.86572 1.83935 1.48879 1.15169 1.22775 0.93702 0.87803 0.93692 1.46054 1.08191 1.19088 1.62934 1.19372 0.91022 0.94555 1.31453 0.90074 1.25630 0.96706 1.01820 1.01680 1.69980 1.06344 1.38091 1.45431 0.85068 0.78052 0.78854 0.77420 1.21538 1.21852 1.19250 1.22794 0.88495 0.94981 0.93540 1.22752 1.07273 0.89355 0.96138 1.30577 1.15025 1.05172 1.17629 1.06905 0.74403 0.73795 0.80481 1.93536 1.82449 1.57504 1.67025 1.93604 1.36641 1.81089 1.87718 1.55161 1.70944 1.45927 1.13555 0.92130 0.89276 0.91903 0.87039 0.83539 0.75358 0.90132 0.91608 0.76642 0.96014 0.93564 0.94208 0.92419 0.91447 0.86579 0.82996 0.81022 0.81786 0.72590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 8.27 71.98 0.60 -1.23 16 2 C 0.15 1.60 0.83 3.70 0.00 1.60 16 3 C -0.15 -1.60 4.68 29.85 0.14 -1.46 16 4 C 0.51 10.27 7.29 87.66 0.64 10.91 16 5 O -0.57 -14.95 11.80 -3.01 -0.04 -14.98 16 6 N -0.72 -14.84 5.34 -463.04 -2.47 -17.31 16 7 C 0.12 3.25 5.28 86.38 0.46 3.70 16 8 C 0.10 3.47 1.52 -10.13 -0.02 3.45 16 9 O -0.54 -17.61 13.51 -148.98 -2.01 -19.62 16 10 C 0.15 6.67 6.83 86.48 0.59 7.26 16 11 N -0.64 -32.94 3.70 -720.22 -2.66 -35.60 16 12 C -0.24 -13.50 10.70 84.03 0.90 -12.60 16 13 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 14 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 15 N -0.95 -57.23 11.51 21.65 0.25 -56.98 16 16 Si 0.98 46.23 29.56 68.60 2.03 48.26 16 17 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 C 0.13 5.11 8.34 86.48 0.72 5.83 16 21 C -0.12 -0.29 5.56 31.56 0.18 -0.12 16 22 C -0.55 -2.26 7.65 72.86 0.56 -1.70 16 23 S 2.54 46.25 6.47 -56.49 -0.37 45.88 16 24 O -1.02 -27.64 18.14 -127.79 -2.32 -29.96 16 25 O -1.00 -26.16 18.15 -127.79 -2.32 -28.48 16 26 N -1.09 -20.02 5.67 -151.93 -0.86 -20.88 16 27 H 0.06 1.11 5.50 -2.39 -0.01 1.10 16 28 H 0.09 0.45 7.97 -2.39 -0.02 0.43 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.11 1.15 8.11 -2.39 -0.02 1.13 16 31 H 0.15 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.41 6.66 7.31 -92.72 -0.68 5.98 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.07 1.99 8.04 -2.39 -0.02 1.97 16 35 H 0.38 8.51 7.61 -74.06 -0.56 7.94 16 36 H 0.02 1.05 8.03 -2.39 -0.02 1.03 16 37 H 0.05 2.34 7.35 -2.39 -0.02 2.32 16 38 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 39 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.07 2.48 8.10 -2.39 -0.02 2.46 16 41 H 0.12 0.03 7.80 -2.39 -0.02 0.01 16 42 H 0.15 -0.59 7.66 -2.39 -0.02 -0.61 16 43 H 0.17 -0.19 8.14 -2.38 -0.02 -0.21 16 44 H 0.16 0.11 8.14 -2.39 -0.02 0.09 16 45 H 0.43 10.03 7.03 -93.00 -0.65 9.38 16 Total: -1.00 -91.47 373.08 -6.39 -97.86 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.85 Total: 19.46 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 5.23 Total: 12.36 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -5.74 Total: -130.78 kcal Atomic # 8 Polarization: -86.36 SS G_CDS: -6.68 Total: -93.05 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 16 Polarization: 46.25 SS G_CDS: -0.37 Total: 45.88 kcal Total: -91.47 -6.39 -97.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733511105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.931 kcal (2) G-P(sol) polarization free energy of solvation -91.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds