Wall clock time and date at job start Wed Apr 1 2020 04:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00439 * 2 1 4 4 H 1.48510 * 109.46990 * 270.00067 * 3 2 1 5 5 H 1.48498 * 109.47284 * 29.99451 * 3 2 1 6 6 H 1.48496 * 109.47789 * 150.00208 * 3 2 1 7 7 C 1.38814 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00012 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00218 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00049 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46963 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.43320 * 56.08449 * 11 10 9 13 13 C 1.54892 * 110.48490 * 293.54218 * 11 10 9 14 14 C 1.54881 * 102.75032 * 203.38151 * 13 11 10 15 15 C 1.54265 * 104.19666 * 37.94300 * 14 13 11 16 16 H 1.08998 * 110.02996 * 95.67858 * 15 14 13 17 17 N 1.46505 * 110.03209 * 217.05652 * 15 14 13 18 18 C 1.34772 * 120.00132 * 273.54503 * 17 15 14 19 19 O 1.21584 * 119.99909 * 0.02562 * 18 17 15 20 20 C 1.47511 * 120.00095 * 180.02562 * 18 17 15 21 21 C 1.36820 * 126.94332 * 180.02562 * 20 18 17 22 22 C 1.41270 * 103.84584 * 179.97438 * 21 20 18 23 23 C 1.50700 * 126.70498 * 180.02562 * 22 21 20 24 24 F 1.39901 * 109.46773 * 90.00468 * 23 22 21 25 25 F 1.39896 * 109.47240 * 210.00248 * 23 22 21 26 26 F 1.39895 * 109.47358 * 330.00608 * 23 22 21 27 27 N 1.30132 * 106.58703 * 0.02562 * 22 21 20 28 28 O 1.20881 * 111.98415 * 359.69356 * 27 22 21 29 29 C 1.53880 * 106.59770 * 336.38970 * 15 14 13 30 30 H 0.97006 * 119.99403 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99631 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47615 * 60.00161 * 10 9 7 33 33 H 1.09002 * 109.47304 * 300.00048 * 10 9 7 34 34 H 1.09006 * 110.75717 * 321.69912 * 13 11 10 35 35 H 1.09002 * 110.75317 * 84.87598 * 13 11 10 36 36 H 1.09001 * 110.48767 * 156.62612 * 14 13 11 37 37 H 1.09010 * 110.48540 * 279.26520 * 14 13 11 38 38 H 0.97005 * 119.99419 * 93.54807 * 17 15 14 39 39 H 1.08001 * 128.07878 * 0.02562 * 21 20 18 40 40 H 1.08998 * 110.03026 * 240.71389 * 29 15 14 41 41 H 1.09002 * 110.02770 * 119.28086 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0027 11 6 1.0636 -4.8197 0.0031 12 1 0.3835 -4.7392 -0.8448 13 6 0.2703 -4.8542 1.3330 14 6 -0.1837 -6.3323 1.4220 15 6 1.0178 -7.1307 0.8755 16 1 1.6446 -7.4726 1.6991 17 7 0.5454 -8.2773 0.0955 18 6 0.2619 -9.4414 0.7127 19 8 0.3978 -9.5398 1.9169 20 6 -0.2132 -10.5961 -0.0728 21 6 -0.5408 -11.8361 0.4039 22 6 -0.9282 -12.5509 -0.7514 23 6 -1.3919 -13.9835 -0.8110 24 9 -2.7816 -14.0305 -0.6568 25 9 -1.0409 -14.5363 -2.0472 26 9 -0.7839 -14.7136 0.2158 27 7 -0.8063 -11.7304 -1.7542 28 8 -0.4176 -10.6411 -1.4029 29 6 1.8109 -6.1689 -0.0267 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0016 32 1 2.6846 -3.7138 0.8928 33 1 2.6846 -3.7154 -0.8872 34 1 0.9145 -4.5966 2.1739 35 1 -0.5890 -4.1851 1.2877 36 1 -0.3857 -6.6077 2.4571 37 1 -1.0655 -6.4984 0.8030 38 1 0.4367 -8.1986 -0.8652 39 1 -0.5111 -12.1863 1.4251 40 1 1.8443 -6.5549 -1.0455 41 1 2.8226 -6.0440 0.3592 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734476260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:21 Heat of formation + Delta-G solvation = -115.968057 kcal Electronic energy + Delta-G solvation = -29299.324178 eV Core-core repulsion = 24381.925716 eV Total energy + Delta-G solvation = -4917.398462 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.85041 -48.37747 -48.33659 -46.04546 -40.38043 -38.24232 -35.52762 -34.95660 -33.70630 -32.79752 -31.09954 -28.89321 -28.03967 -27.93830 -25.06798 -24.19744 -23.73395 -22.25377 -21.61919 -20.54569 -19.87045 -19.58450 -19.39107 -18.99711 -18.50324 -17.79667 -17.06762 -16.79584 -16.62600 -15.43150 -15.22345 -15.15644 -15.04505 -14.94270 -14.74760 -14.53708 -14.46502 -14.41372 -14.37233 -13.98974 -13.50390 -13.22577 -13.09669 -12.85806 -12.72914 -12.26554 -12.02135 -11.68511 -11.44505 -11.16958 -10.94159 -10.84565 -10.70914 -10.64527 -10.60291 -10.33303 -10.29343 -9.98281 -9.69635 -9.45154 -8.87587 -6.92131 -5.77447 -3.05631 -0.00585 0.78833 1.51687 1.83360 2.40963 2.56067 2.69065 3.08676 3.42832 3.48126 3.49739 3.60036 3.82402 3.91058 4.20182 4.30289 4.52659 4.59649 4.68081 4.90492 4.92479 5.38482 5.43494 5.50590 5.53465 5.58563 5.73740 5.79095 5.93378 6.02808 6.19891 6.23384 6.30105 6.50222 6.55497 6.74675 6.79543 6.89715 7.06650 7.50288 7.69225 8.41890 9.53083 10.11655 10.46029 11.45483 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.034974 B = 0.001592 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.397553 B =17583.940887 C =17767.360803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.160 3.840 11 C -0.098 4.098 12 H 0.076 0.924 13 C -0.111 4.111 14 C -0.135 4.135 15 C 0.139 3.861 16 H 0.097 0.903 17 N -0.701 5.701 18 C 0.604 3.396 19 O -0.503 6.503 20 C -0.066 4.066 21 C -0.112 4.112 22 C -0.088 4.088 23 C 0.561 3.439 24 F -0.162 7.162 25 F -0.162 7.162 26 F -0.159 7.159 27 N -0.287 5.287 28 O 0.157 5.843 29 C -0.123 4.123 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.020 0.980 33 H 0.017 0.983 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.408 0.592 39 H 0.200 0.800 40 H 0.071 0.929 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.159 -29.537 -0.656 29.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.032 3.968 11 C -0.116 4.116 12 H 0.095 0.905 13 C -0.149 4.149 14 C -0.173 4.173 15 C 0.036 3.964 16 H 0.115 0.885 17 N -0.352 5.352 18 C 0.385 3.615 19 O -0.378 6.378 20 C -0.131 4.131 21 C -0.135 4.135 22 C -0.246 4.246 23 C 0.506 3.494 24 F -0.143 7.143 25 F -0.143 7.143 26 F -0.140 7.140 27 N 0.023 4.977 28 O 0.070 5.930 29 C -0.162 4.162 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.244 0.756 39 H 0.217 0.783 40 H 0.089 0.911 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.160 -29.704 -1.091 29.803 hybrid contribution 0.027 0.578 0.180 0.606 sum -2.133 -29.126 -0.911 29.218 Atomic orbital electron populations 1.69657 1.05093 1.25613 1.57879 1.24736 0.95530 0.97685 1.03116 0.86194 0.78651 0.83878 0.77491 1.21771 1.21790 1.20792 1.19236 0.91025 0.84240 1.42520 0.91242 1.42337 1.05874 0.99932 1.89439 1.20693 0.93050 0.85351 0.97707 1.22164 0.97607 0.93608 0.98272 0.90547 1.22464 1.00477 0.94239 0.97689 1.22818 0.97182 0.96004 1.01339 1.21947 0.96090 0.84120 0.94238 0.88537 1.46227 1.65711 1.11075 1.12150 1.16405 0.78384 0.80655 0.86023 1.90925 1.52396 1.82281 1.12169 1.24511 1.06715 0.98551 0.83368 1.22707 0.98883 0.90808 1.01052 1.23448 1.11215 0.97593 0.92342 1.16563 0.75459 0.82881 0.74526 1.93289 1.29086 1.96617 1.95297 1.93275 1.91705 1.86693 1.42633 1.93268 1.83039 1.78586 1.59132 1.73840 1.09823 0.91480 1.22538 1.85051 1.59272 1.25846 1.22835 1.22452 0.99715 0.94774 0.99214 0.93546 0.78253 0.96235 0.96521 0.90984 0.90670 0.91131 0.91242 0.75592 0.78332 0.91069 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.73 -17.86 5.44 -59.91 -0.33 -18.19 16 10 C 0.16 2.98 5.54 -4.04 -0.02 2.96 16 11 C -0.10 -1.37 2.93 -88.96 -0.26 -1.63 16 12 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 13 C -0.11 -1.53 6.01 -24.74 -0.15 -1.68 16 14 C -0.13 -1.49 6.52 -25.08 -0.16 -1.66 16 15 C 0.14 1.36 3.22 -66.81 -0.22 1.14 16 16 H 0.10 1.01 7.61 -51.93 -0.39 0.61 16 17 N -0.70 -5.61 5.05 -53.77 -0.27 -5.89 16 18 C 0.60 5.51 7.81 -12.48 -0.10 5.41 16 19 O -0.50 -6.10 16.59 5.29 0.09 -6.01 16 20 C -0.07 -0.51 7.29 -36.32 -0.26 -0.78 16 21 C -0.11 -0.80 10.65 -38.94 -0.41 -1.22 16 22 C -0.09 -0.71 6.63 -82.16 -0.54 -1.26 16 23 C 0.56 4.26 3.56 36.01 0.13 4.39 16 24 F -0.16 -1.29 17.30 2.25 0.04 -1.25 16 25 F -0.16 -1.37 17.27 2.25 0.04 -1.33 16 26 F -0.16 -1.12 17.08 2.25 0.04 -1.08 16 27 N -0.29 -2.57 12.00 33.52 0.40 -2.16 16 28 O 0.16 1.21 11.04 15.54 0.17 1.38 16 29 C -0.12 -1.26 6.14 -25.61 -0.16 -1.42 16 30 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.38 9.82 7.52 -40.82 -0.31 9.51 16 32 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 1.05 8.02 -51.93 -0.42 0.64 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.74 8.05 -51.92 -0.42 0.33 16 38 H 0.41 2.41 8.12 -40.82 -0.33 2.07 16 39 H 0.20 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.07 0.61 7.60 -51.93 -0.39 0.22 16 41 H 0.08 0.83 7.84 -51.93 -0.41 0.42 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -31.41 367.13 -5.74 -37.16 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.75 Total: 4.77 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.41 Total: -2.98 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.53 Total: -53.36 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: 0.26 Total: -4.63 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.12 Total: -3.65 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.41 -5.74 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734476260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.811 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds