Wall clock time and date at job start Wed Apr 1 2020 04:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33697 * 126.27243 * 2 1 4 4 C 1.30617 * 108.99279 * 180.02562 * 3 2 1 5 5 O 1.33668 * 109.15862 * 359.73797 * 4 3 2 6 6 C 1.35343 * 107.68179 * 0.42707 * 5 4 3 7 7 C 1.46721 * 126.64471 * 179.84227 * 6 5 4 8 8 O 1.21688 * 120.00019 * 179.68599 * 7 6 5 9 9 N 1.34778 * 119.99950 * 359.69130 * 7 6 5 10 10 C 1.47416 * 125.64936 * 179.97438 * 9 7 6 11 11 C 1.54909 * 104.83362 * 204.16274 * 10 9 7 12 12 H 1.09004 * 111.00356 * 204.92119 * 11 10 9 13 13 C 1.52997 * 111.00675 * 81.06457 * 11 10 9 14 14 N 1.46501 * 109.47231 * 68.80377 * 13 11 10 15 15 C 1.36930 * 119.99737 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00316 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99825 * 180.02562 * 15 14 13 18 18 N 1.31613 * 120.00106 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00240 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46913 * 59.99526 * 19 17 15 21 21 H 1.48499 * 109.47420 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46845 * 300.00232 * 19 17 15 23 23 C 1.55155 * 101.57903 * 322.98545 * 11 10 9 24 24 H 1.08998 * 110.87700 * 277.06908 * 23 11 10 25 25 C 1.52999 * 110.71962 * 153.86280 * 23 11 10 26 26 F 1.39893 * 109.47361 * 299.74927 * 25 23 11 27 27 F 1.39902 * 109.47041 * 59.74966 * 25 23 11 28 28 F 1.39905 * 109.47405 * 179.74605 * 25 23 11 29 29 C 1.47026 * 125.64650 * 0.02562 * 9 7 6 30 30 H 1.08997 * 109.47306 * 269.95453 * 1 2 3 31 31 H 1.09005 * 109.47141 * 29.95688 * 1 2 3 32 32 H 1.09001 * 109.47124 * 149.95521 * 1 2 3 33 33 H 1.08006 * 125.41949 * 179.97438 * 4 3 2 34 34 H 1.09005 * 110.36974 * 323.00082 * 10 9 7 35 35 H 1.08998 * 110.36666 * 85.20930 * 10 9 7 36 36 H 1.09000 * 109.47330 * 188.80585 * 13 11 10 37 37 H 1.09004 * 109.46692 * 308.80490 * 13 11 10 38 38 H 0.97000 * 119.99486 * 0.02562 * 14 13 11 39 39 H 0.97003 * 120.00523 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.88453 * 59.49098 * 29 9 7 41 41 H 1.09003 * 110.00742 * 298.40002 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6899 -0.0006 5 8 3.5890 -0.6461 0.0049 6 6 2.3137 -1.0992 -0.0007 7 6 1.8827 -2.5017 -0.0010 8 8 0.6966 -2.7737 -0.0006 9 7 2.8005 -3.4887 -0.0016 10 6 2.5083 -4.9336 -0.0015 11 6 3.7692 -5.5932 0.6106 12 1 3.8709 -6.6260 0.2772 13 6 3.7438 -5.5123 2.1383 14 7 2.6818 -6.3788 2.6555 15 6 2.4682 -6.4688 4.0051 16 1 3.0823 -5.9008 4.6881 17 6 1.4623 -7.2903 4.4953 18 7 0.7135 -7.9822 3.6629 19 14 1.1703 -7.4126 6.3363 20 1 0.8315 -6.0705 6.8740 21 1 0.0481 -8.3493 6.5984 22 1 2.3997 -7.9158 7.0000 23 6 4.8998 -4.7062 0.0254 24 1 5.1648 -5.0288 -0.9814 25 6 6.1279 -4.7228 0.9378 26 9 5.7788 -4.2279 2.1988 27 9 6.5966 -6.0348 1.0652 28 9 7.1315 -3.9209 0.3836 29 6 4.2589 -3.3026 -0.0015 30 1 -0.3634 -0.0008 1.0276 31 1 -0.3634 0.8904 -0.5132 32 1 -0.3633 -0.8896 -0.5145 33 1 4.4043 1.3444 -0.0011 34 1 1.6336 -5.1438 0.6141 35 1 2.3488 -5.2885 -1.0196 36 1 4.7049 -5.8388 2.5355 37 1 3.5547 -4.4834 2.4445 38 1 2.1300 -6.8887 2.0420 39 1 0.0103 -8.5559 4.0053 40 1 4.5608 -2.7401 0.8819 41 1 4.5672 -2.7716 -0.9022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734508270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:14 Heat of formation + Delta-G solvation = -160.378370 kcal Electronic energy + Delta-G solvation = -32218.070033 eV Core-core repulsion = 27298.745796 eV Total energy + Delta-G solvation = -4919.324237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.19397 -48.66621 -48.57822 -44.50213 -41.31073 -39.24192 -36.60786 -36.22897 -34.13256 -32.82867 -32.66088 -30.71990 -29.09579 -27.33982 -26.94008 -25.30910 -24.48767 -23.33940 -22.71807 -21.51403 -21.09823 -19.63045 -19.54854 -19.14241 -18.64900 -18.33129 -18.06792 -17.61526 -17.21550 -16.65478 -16.55107 -15.79587 -15.62727 -15.57082 -15.53557 -15.25382 -15.12191 -14.95966 -14.73759 -14.72076 -14.48997 -14.30808 -14.21547 -14.03375 -13.91291 -13.45729 -13.24645 -13.16992 -13.10699 -12.79669 -12.51271 -12.32741 -12.24008 -12.18017 -11.98815 -11.80778 -11.71889 -11.34861 -10.96511 -10.22440 -9.78451 -9.02653 -7.97447 -5.25975 -0.28558 1.24334 1.37089 1.44427 1.47171 1.53266 1.61696 1.86939 1.96769 2.48611 2.61769 2.72768 2.94456 3.11876 3.31155 3.37656 3.53961 3.55825 3.63177 3.75554 3.90889 4.02568 4.21452 4.34477 4.36269 4.41372 4.47555 4.60117 4.63591 4.69043 4.78218 4.80877 4.92084 4.97676 5.00624 5.17404 5.28147 5.45622 6.09050 6.24510 6.47288 6.75415 7.31757 8.04489 8.29130 9.25369 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.008815 B = 0.004391 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.549682 B = 6374.443017 C = 8415.480833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.076 3.924 3 N -0.523 5.523 4 C 0.231 3.769 5 O -0.187 6.187 6 C -0.134 4.134 7 C 0.618 3.382 8 O -0.544 6.544 9 N -0.603 5.603 10 C 0.118 3.882 11 C -0.097 4.097 12 H 0.124 0.876 13 C 0.155 3.845 14 N -0.739 5.739 15 C -0.248 4.248 16 H 0.068 0.932 17 C -0.068 4.068 18 N -0.964 5.964 19 Si 0.968 3.032 20 H -0.283 1.283 21 H -0.292 1.292 22 H -0.276 1.276 23 C -0.129 4.129 24 H 0.178 0.822 25 C 0.463 3.537 26 F -0.187 7.187 27 F -0.182 7.182 28 F -0.176 7.176 29 C 0.111 3.889 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.312 0.688 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.030 0.970 37 H 0.013 0.987 38 H 0.376 0.624 39 H 0.252 0.748 40 H 0.075 0.925 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.549 15.516 -14.376 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 N -0.252 5.252 4 C 0.006 3.994 5 O -0.074 6.074 6 C -0.189 4.189 7 C 0.407 3.593 8 O -0.424 6.424 9 N -0.335 5.335 10 C -0.003 4.003 11 C -0.116 4.116 12 H 0.142 0.858 13 C 0.029 3.971 14 N -0.383 5.383 15 C -0.380 4.380 16 H 0.086 0.914 17 C -0.261 4.261 18 N -0.614 5.614 19 Si 0.797 3.203 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.202 1.202 23 C -0.149 4.149 24 H 0.195 0.805 25 C 0.409 3.591 26 F -0.169 7.169 27 F -0.164 7.164 28 F -0.157 7.157 29 C -0.012 4.012 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.326 0.674 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.048 0.952 37 H 0.030 0.970 38 H 0.209 0.791 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.805 16.044 -14.171 24.446 hybrid contribution -0.120 -1.077 1.359 1.738 sum 11.685 14.967 -12.812 22.907 Atomic orbital electron populations 1.20398 0.85153 1.04493 1.03865 1.22281 0.98977 0.86741 0.96725 1.70399 1.02562 1.31124 1.21132 1.29655 0.98222 0.79047 0.92439 1.84549 1.28180 1.25316 1.69351 1.22413 0.82573 0.95099 1.18767 1.16097 0.84545 0.81732 0.76970 1.90878 1.16594 1.82319 1.52601 1.48177 1.06896 1.06621 1.71766 1.22362 0.97868 0.77952 1.02159 1.22604 0.92829 1.00996 0.95188 0.85791 1.21112 0.91492 0.93097 0.91388 1.42450 1.38893 1.52918 1.04019 1.19457 1.12770 1.20889 0.84839 0.91440 1.25481 0.98764 1.00008 1.01803 1.69776 1.23798 1.33092 1.34701 0.85298 0.77285 0.77204 0.80502 1.20928 1.21747 1.20209 1.23643 0.90980 0.98047 1.02190 0.80478 1.20321 0.85303 0.73550 0.79952 1.93198 1.91705 1.87783 1.44198 1.93205 1.89965 1.37079 1.96111 1.93201 1.63764 1.73772 1.84951 1.22124 0.78728 0.95233 1.05079 0.90048 0.88707 0.89920 0.67369 0.92075 0.87503 0.95224 0.96953 0.79096 0.93887 0.90631 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.95 9.87 71.24 0.70 -1.25 16 2 C 0.08 1.95 7.16 41.83 0.30 2.25 16 3 N -0.52 -11.22 11.26 -303.11 -3.41 -14.63 16 4 C 0.23 3.14 13.21 130.42 1.72 4.86 16 5 O -0.19 -3.56 8.50 -7.12 -0.06 -3.62 16 6 C -0.13 -3.51 6.98 24.05 0.17 -3.34 16 7 C 0.62 19.42 7.82 86.46 0.68 20.09 16 8 O -0.54 -20.79 15.05 -4.31 -0.06 -20.86 16 9 N -0.60 -16.41 3.30 -816.45 -2.69 -19.10 16 10 C 0.12 3.39 6.29 86.86 0.55 3.94 16 11 C -0.10 -2.64 2.76 -9.40 -0.03 -2.67 16 12 H 0.12 3.11 8.14 -2.38 -0.02 3.09 16 13 C 0.16 6.07 4.10 86.38 0.35 6.42 16 14 N -0.74 -37.49 5.24 -343.46 -1.80 -39.29 16 15 C -0.25 -14.17 9.99 84.03 0.84 -13.33 16 16 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 17 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 18 N -0.96 -59.25 13.06 21.65 0.28 -58.96 16 19 Si 0.97 47.18 29.55 68.60 2.03 49.21 16 20 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 23 C -0.13 -2.39 2.91 -9.61 -0.03 -2.42 16 24 H 0.18 1.77 8.14 -2.39 -0.02 1.75 16 25 C 0.46 10.29 2.35 71.98 0.17 10.45 16 26 F -0.19 -5.33 12.64 44.97 0.57 -4.77 16 27 F -0.18 -4.59 16.50 44.97 0.74 -3.84 16 28 F -0.18 -3.32 17.23 44.97 0.77 -2.55 16 29 C 0.11 2.18 4.68 86.73 0.41 2.59 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.08 2.19 6.47 -2.39 -0.02 2.18 16 33 H 0.31 0.02 8.06 -2.91 -0.02 0.00 16 34 H 0.06 2.36 7.40 -2.38 -0.02 2.34 16 35 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.03 1.20 5.63 -2.39 -0.01 1.18 16 37 H 0.01 0.53 7.37 -2.39 -0.02 0.51 16 38 H 0.38 19.88 7.38 -92.71 -0.68 19.20 16 39 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 40 H 0.08 1.65 6.67 -2.39 -0.02 1.64 16 41 H 0.12 1.60 7.82 -2.39 -0.02 1.59 16 Total: -1.00 -78.16 350.91 3.09 -75.07 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.42 Total: 19.22 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 6.30 Total: 24.11 kcal Atomic # 7 Polarization: -124.36 SS G_CDS: -7.62 Total: -131.98 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.13 Total: -24.48 kcal Atomic # 9 Polarization: -13.24 SS G_CDS: 2.08 Total: -11.16 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -78.16 3.09 -75.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734508270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.305 kcal (2) G-P(sol) polarization free energy of solvation -78.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds