Wall clock time and date at job start Wed Apr 1 2020 04:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30013 * 127.33853 * 2 1 4 4 O 1.20653 * 112.30635 * 180.30506 * 3 2 1 5 5 C 1.33493 * 113.15578 * 359.70664 * 4 3 2 6 6 C 1.37360 * 106.34240 * 0.02562 * 5 4 3 7 7 C 1.47398 * 128.56459 * 179.97438 * 6 5 4 8 8 O 1.21613 * 119.99830 * 180.02562 * 7 6 5 9 9 N 1.34769 * 120.00281 * 0.02562 * 7 6 5 10 10 C 1.47426 * 125.65136 * 180.02562 * 9 7 6 11 11 C 1.54909 * 104.83336 * 204.09624 * 10 9 7 12 12 H 1.08997 * 111.00323 * 204.91865 * 11 10 9 13 13 C 1.52997 * 111.00675 * 81.06599 * 11 10 9 14 14 N 1.46501 * 109.47231 * 68.80377 * 13 11 10 15 15 C 1.36930 * 119.99737 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00316 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99825 * 180.02562 * 15 14 13 18 18 N 1.31626 * 120.00214 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99996 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.46940 * 90.00199 * 19 17 15 21 21 H 1.48497 * 109.46837 * 210.00259 * 19 17 15 22 22 H 1.48505 * 109.46890 * 329.99936 * 19 17 15 23 23 C 1.55158 * 101.58235 * 322.98819 * 11 10 9 24 24 H 1.09001 * 110.87317 * 277.07480 * 23 11 10 25 25 C 1.52998 * 110.72132 * 153.86769 * 23 11 10 26 26 F 1.39902 * 109.46901 * 299.74588 * 25 23 11 27 27 F 1.39892 * 109.47285 * 59.74446 * 25 23 11 28 28 F 1.39905 * 109.47222 * 179.74624 * 25 23 11 29 29 C 1.47021 * 125.64690 * 359.97438 * 9 7 6 30 30 H 1.08996 * 109.47085 * 270.14535 * 1 2 3 31 31 H 1.08996 * 109.47016 * 30.14876 * 1 2 3 32 32 H 1.09004 * 109.46841 * 150.14999 * 1 2 3 33 33 H 1.07998 * 126.83193 * 180.02562 * 5 4 3 34 34 H 1.08999 * 110.36708 * 322.93546 * 10 9 7 35 35 H 1.08998 * 110.36559 * 85.14349 * 10 9 7 36 36 H 1.09000 * 109.47330 * 188.80585 * 13 11 10 37 37 H 1.09004 * 109.46692 * 308.80490 * 13 11 10 38 38 H 0.97000 * 119.99486 * 0.02562 * 14 13 11 39 39 H 0.97003 * 119.99797 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.88390 * 59.55591 * 29 9 7 41 41 H 1.09002 * 109.88177 * 298.38765 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7208 -0.0059 5 6 3.6494 -0.6008 -0.0047 6 6 2.3992 -1.1696 0.0026 7 6 2.0402 -2.5992 0.0063 8 8 0.8706 -2.9324 0.0124 9 7 3.0080 -3.5371 0.0029 10 6 2.7914 -4.9954 0.0053 11 6 4.0880 -5.5879 0.6114 12 1 4.2415 -6.6142 0.2781 13 6 4.0660 -5.5072 2.1391 14 7 3.0532 -6.4274 2.6622 15 6 2.8514 -6.5273 4.0129 16 1 3.4385 -5.9275 4.6925 17 6 1.8921 -7.3996 4.5086 18 7 1.6983 -7.4960 5.8070 19 14 0.8770 -8.4376 3.3332 20 1 1.5680 -9.7294 3.0906 21 1 -0.4592 -8.6950 3.9278 22 1 0.7151 -7.7135 2.0468 23 6 5.1680 -4.6438 0.0201 24 1 5.4442 -4.9530 -0.9880 25 6 6.3999 -4.5957 0.9262 26 9 6.0317 -4.1186 2.1887 27 9 6.9367 -5.8814 1.0519 28 9 7.3576 -3.7432 0.3664 29 6 4.4547 -3.2754 -0.0051 30 1 -0.3633 0.0026 1.0276 31 1 -0.3633 0.8886 -0.5161 32 1 -0.3633 -0.8914 -0.5115 33 1 4.5967 -1.1195 -0.0087 34 1 1.9319 -5.2502 0.6254 35 1 2.6454 -5.3589 -1.0118 36 1 5.0448 -5.7829 2.5316 37 1 3.8252 -4.4893 2.4457 38 1 2.5256 -6.9658 2.0518 39 1 1.0277 -8.1053 6.1533 40 1 4.7316 -2.6969 0.8762 41 1 4.7280 -2.7314 -0.9092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734512124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:12 Heat of formation + Delta-G solvation = -89.065873 kcal Electronic energy + Delta-G solvation = -32206.052326 eV Core-core repulsion = 27289.820431 eV Total energy + Delta-G solvation = -4916.231895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.30607 -47.78980 -47.67258 -45.16065 -40.44810 -38.09958 -34.94299 -34.68084 -33.16960 -32.07211 -31.39901 -29.62846 -28.87340 -26.59175 -26.15026 -24.53853 -22.95029 -22.05766 -21.49839 -20.64315 -20.18590 -18.70111 -18.52080 -18.00401 -17.95991 -17.62648 -17.20832 -16.87725 -16.39477 -15.76848 -15.04569 -14.67405 -14.60260 -14.38936 -14.19666 -14.15354 -14.01147 -13.89969 -13.73341 -13.70007 -13.46650 -13.30865 -13.15154 -13.02526 -12.79164 -12.62173 -12.33576 -12.15951 -11.90289 -11.57736 -11.30823 -11.09011 -10.84825 -10.72551 -10.27286 -10.16891 -10.13533 -10.02407 -9.61742 -8.96917 -8.93234 -7.29712 -5.79054 -3.16300 0.78047 1.56047 2.27295 2.57304 2.91866 2.99242 3.35673 3.36561 3.38040 3.44538 3.55496 3.73416 3.79257 4.02373 4.20761 4.35068 4.41387 4.54681 4.56626 4.58115 4.81234 4.83130 4.88898 5.04008 5.25143 5.33208 5.39341 5.42907 5.51099 5.52679 5.60201 5.68100 5.90946 5.94809 5.97397 6.39572 6.51699 7.12766 7.86891 7.94284 7.95832 8.38384 9.15861 9.87798 10.05569 11.39075 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.008966 B = 0.004565 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.275027 B = 6131.746277 C = 8236.225952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.073 3.927 3 N -0.360 5.360 4 O 0.098 5.902 5 C -0.016 4.016 6 C -0.247 4.247 7 C 0.614 3.386 8 O -0.515 6.515 9 N -0.605 5.605 10 C 0.115 3.885 11 C -0.107 4.107 12 H 0.111 0.889 13 C 0.155 3.845 14 N -0.752 5.752 15 C -0.245 4.245 16 H 0.090 0.910 17 C 0.008 3.992 18 N -0.932 5.932 19 Si 0.883 3.117 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.144 4.144 24 H 0.134 0.866 25 C 0.463 3.537 26 F -0.167 7.167 27 F -0.173 7.173 28 F -0.186 7.186 29 C 0.096 3.904 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.228 0.772 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.036 0.964 38 H 0.360 0.640 39 H 0.260 0.740 40 H 0.086 0.914 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.647 11.845 -18.191 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 N -0.068 5.068 4 O 0.038 5.962 5 C -0.099 4.099 6 C -0.254 4.254 7 C 0.402 3.598 8 O -0.391 6.391 9 N -0.340 5.340 10 C -0.007 4.007 11 C -0.127 4.127 12 H 0.129 0.871 13 C 0.028 3.972 14 N -0.398 5.398 15 C -0.375 4.375 16 H 0.108 0.892 17 C -0.188 4.188 18 N -0.579 5.579 19 Si 0.713 3.287 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.165 4.165 24 H 0.152 0.848 25 C 0.408 3.592 26 F -0.148 7.148 27 F -0.154 7.154 28 F -0.168 7.168 29 C -0.028 4.028 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.244 0.756 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.193 0.807 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.805 13.091 -17.900 23.510 hybrid contribution -0.354 -1.716 -0.499 1.822 sum 7.452 11.375 -18.399 22.879 Atomic orbital electron populations 1.20300 0.84703 1.04347 1.04268 1.24872 0.99035 0.86088 0.98919 1.73675 0.89238 1.23551 1.20295 1.84580 1.21593 1.22992 1.66986 1.26957 1.00589 0.84128 0.98178 1.22259 0.92919 0.95362 1.14841 1.16322 0.84346 0.82441 0.76648 1.90840 1.17322 1.81459 1.49512 1.48034 1.04961 1.07200 1.73756 1.22412 0.99253 0.77654 1.01331 1.22837 0.91696 0.99193 0.98950 0.87091 1.21082 0.93963 0.94852 0.87315 1.42639 1.43367 1.48752 1.05023 1.18983 1.16991 1.20145 0.81365 0.89206 1.24661 0.99090 0.99586 0.95490 1.69701 1.36857 1.40736 1.10628 0.86573 0.80440 0.80879 0.80776 1.20999 1.21634 1.20292 1.23554 0.92915 0.98934 1.01080 0.84773 1.20134 0.84638 0.74012 0.80397 1.93254 1.90960 1.88187 1.42414 1.93223 1.87506 1.38596 1.96080 1.93188 1.67167 1.71322 1.85076 1.22245 0.81600 0.95894 1.03027 0.89457 0.90390 0.88552 0.75601 0.88002 0.90595 0.94066 0.94587 0.80692 0.92989 0.89605 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.14 36.01 0.37 -0.48 16 2 C 0.07 0.91 7.58 -79.76 -0.60 0.30 16 3 N -0.36 -4.43 12.01 34.78 0.42 -4.01 16 4 O 0.10 1.02 11.06 18.65 0.21 1.22 16 5 C -0.02 -0.14 10.83 30.41 0.33 0.19 16 6 C -0.25 -2.95 6.41 -102.89 -0.66 -3.61 16 7 C 0.61 8.64 7.85 -12.54 -0.10 8.54 16 8 O -0.52 -9.05 15.95 5.27 0.08 -8.96 16 9 N -0.61 -7.20 3.30 -171.79 -0.57 -7.77 16 10 C 0.12 1.46 6.29 -2.53 -0.02 1.44 16 11 C -0.11 -1.32 2.76 -88.47 -0.24 -1.56 16 12 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 13 C 0.15 2.74 4.10 -4.04 -0.02 2.73 16 14 N -0.75 -17.11 5.04 -59.91 -0.30 -17.41 16 15 C -0.25 -6.88 10.47 -15.06 -0.16 -7.03 16 16 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 17 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 18 N -0.93 -29.28 13.97 55.49 0.78 -28.51 16 19 Si 0.88 21.88 27.74 -169.99 -4.71 17.16 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 22 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 23 C -0.14 -1.23 2.90 -88.78 -0.26 -1.49 16 24 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 25 C 0.46 4.80 2.35 37.16 0.09 4.89 16 26 F -0.17 -2.17 12.64 2.25 0.03 -2.14 16 27 F -0.17 -2.08 16.50 2.25 0.04 -2.04 16 28 F -0.19 -1.69 17.23 2.25 0.04 -1.65 16 29 C 0.10 0.78 4.16 -3.06 -0.01 0.77 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 1.09 7.12 -51.93 -0.37 0.72 16 33 H 0.23 1.10 4.83 -52.49 -0.25 0.84 16 34 H 0.10 1.68 7.40 -51.93 -0.38 1.30 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.76 5.63 -51.93 -0.29 0.47 16 37 H 0.04 0.68 7.37 -51.93 -0.38 0.30 16 38 H 0.36 7.89 5.24 -40.82 -0.21 7.68 16 39 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 40 H 0.09 0.69 5.92 -51.93 -0.31 0.39 16 41 H 0.09 0.42 7.11 -51.93 -0.37 0.05 16 LS Contribution 345.23 15.07 5.20 5.20 Total: -1.00 -35.40 345.23 -4.45 -39.86 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.28 Total: 4.22 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.38 Total: 4.83 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.32 Total: -57.70 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.29 Total: -7.74 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.10 Total: -5.83 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.40 -4.45 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734512124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.209 kcal (2) G-P(sol) polarization free energy of solvation -35.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds