Wall clock time and date at job start Wed Apr 1 2020 04:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30013 * 127.33304 * 2 1 4 4 O 1.20658 * 112.30047 * 180.02562 * 3 2 1 5 5 C 1.33491 * 113.15801 * 0.02562 * 4 3 2 6 6 C 1.37355 * 106.34085 * 359.97438 * 5 4 3 7 7 C 1.47403 * 128.56500 * 179.97438 * 6 5 4 8 8 O 1.21616 * 119.99918 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99939 * 0.02562 * 7 6 5 10 10 C 1.47426 * 125.64769 * 179.71464 * 9 7 6 11 11 C 1.55128 * 104.72458 * 155.82324 * 10 9 7 12 12 H 1.08996 * 110.91191 * 155.27892 * 11 10 9 13 13 C 1.53003 * 111.22416 * 279.17795 * 11 10 9 14 14 N 1.46497 * 109.47366 * 291.17185 * 13 11 10 15 15 C 1.36938 * 119.99931 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00286 * 0.02562 * 15 14 13 17 17 C 1.38816 * 119.99883 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99894 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00185 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46895 * 59.99855 * 19 17 15 21 21 H 1.48500 * 109.47246 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46909 * 299.99982 * 19 17 15 23 23 C 1.55156 * 101.48473 * 37.29552 * 11 10 9 24 24 H 1.09001 * 110.72311 * 82.69677 * 23 11 10 25 25 C 1.52997 * 110.87343 * 205.90206 * 23 11 10 26 26 F 1.39901 * 109.47397 * 180.31263 * 25 23 11 27 27 F 1.39902 * 109.47012 * 300.30894 * 25 23 11 28 28 F 1.39902 * 109.47397 * 60.30935 * 25 23 11 29 29 C 1.47019 * 125.65186 * 0.03353 * 9 7 6 30 30 H 1.09000 * 109.47086 * 269.97479 * 1 2 3 31 31 H 1.08996 * 109.47227 * 29.97709 * 1 2 3 32 32 H 1.08998 * 109.46849 * 149.97152 * 1 2 3 33 33 H 1.08003 * 126.83337 * 180.26108 * 5 4 3 34 34 H 1.09004 * 110.36951 * 274.75425 * 10 9 7 35 35 H 1.09000 * 110.36578 * 37.07631 * 10 9 7 36 36 H 1.09005 * 109.46954 * 51.17320 * 13 11 10 37 37 H 1.09002 * 109.47266 * 171.16898 * 13 11 10 38 38 H 0.96993 * 119.99779 * 359.97438 * 14 13 11 39 39 H 0.96993 * 119.99519 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.87926 * 300.43081 * 29 9 7 41 41 H 1.08995 * 109.88344 * 61.59483 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6007 -0.0015 6 6 2.3992 -1.1696 -0.0010 7 6 2.0402 -2.5992 -0.0022 8 8 0.8705 -2.9324 -0.0020 9 7 3.0080 -3.5370 -0.0035 10 6 2.7914 -4.9953 0.0012 11 6 4.0849 -5.5881 -0.6167 12 1 4.2401 -6.6143 -0.2840 13 6 4.0558 -5.5086 -2.1444 14 7 3.0408 -6.4294 -2.6621 15 6 2.8335 -6.5312 -4.0119 16 1 3.4183 -5.9330 -4.6947 17 6 1.8721 -7.4042 -4.5025 18 7 1.1603 -8.1344 -3.6703 19 14 1.5896 -7.5437 -6.3437 20 1 2.8444 -7.9833 -7.0050 21 1 0.5178 -8.5374 -6.6062 22 1 1.1825 -6.2215 -6.8835 23 6 5.1678 -4.6437 -0.0312 24 1 5.4465 -4.9540 0.9758 25 6 6.3976 -4.5947 -0.9402 26 9 7.3563 -3.7423 -0.3822 27 9 6.9345 -5.8802 -1.0680 28 9 6.0264 -4.1169 -2.2016 29 6 4.4547 -3.2754 -0.0032 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8897 -0.5143 33 1 4.5967 -1.1195 0.0019 34 1 2.6558 -5.3555 1.0211 35 1 1.9268 -5.2523 -0.6108 36 1 3.8132 -4.4909 -2.4507 37 1 5.0328 -5.7843 -2.5413 38 1 2.5163 -6.9675 -2.0489 39 1 0.4883 -8.7441 -4.0131 40 1 4.7271 -2.6974 -0.8862 41 1 4.7328 -2.7309 0.8992 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734512125.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:14 Heat of formation + Delta-G solvation = -93.666257 kcal Electronic energy + Delta-G solvation = -32119.757613 eV Core-core repulsion = 27203.326230 eV Total energy + Delta-G solvation = -4916.431383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.25198 -47.74042 -47.61707 -45.12182 -40.33449 -37.98510 -34.75253 -34.62794 -33.10772 -32.00574 -31.18842 -29.33139 -28.77444 -26.46091 -25.91009 -24.45902 -23.08205 -22.21807 -21.45011 -20.50691 -20.08968 -18.62646 -18.47570 -17.94449 -17.67426 -17.54565 -16.91561 -16.82277 -16.32181 -15.67080 -14.98683 -14.63732 -14.48323 -14.38946 -14.13735 -14.04898 -13.91793 -13.79769 -13.70744 -13.57232 -13.44509 -13.27725 -13.06251 -12.88408 -12.81290 -12.58796 -12.24088 -12.02757 -11.61146 -11.50639 -11.13581 -10.88079 -10.76653 -10.62947 -10.18820 -10.10937 -10.09161 -9.98079 -9.72305 -8.90455 -8.84700 -6.97303 -5.78753 -3.08219 0.82988 1.59729 2.35486 2.63660 2.97858 3.06827 3.44382 3.46105 3.49035 3.50583 3.62525 3.80179 3.85343 4.06834 4.29526 4.41932 4.47259 4.59369 4.62796 4.66239 4.91049 4.96978 5.01162 5.08769 5.35431 5.38839 5.42296 5.53885 5.56120 5.63261 5.82808 5.93384 6.02311 6.08919 6.22208 6.51072 6.63873 7.23121 7.68464 7.94062 8.01202 8.39076 9.50855 10.04056 10.39065 11.43832 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.008742 B = 0.004313 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.246674 B = 6491.022135 C = 8546.395955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.073 3.927 3 N -0.361 5.361 4 O 0.097 5.903 5 C -0.018 4.018 6 C -0.245 4.245 7 C 0.612 3.388 8 O -0.514 6.514 9 N -0.604 5.604 10 C 0.117 3.883 11 C -0.102 4.102 12 H 0.111 0.889 13 C 0.152 3.848 14 N -0.728 5.728 15 C -0.241 4.241 16 H 0.069 0.931 17 C -0.010 4.010 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.286 1.286 23 C -0.146 4.146 24 H 0.133 0.867 25 C 0.463 3.537 26 F -0.187 7.187 27 F -0.173 7.173 28 F -0.168 7.168 29 C 0.097 3.903 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.228 0.772 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.028 0.972 37 H 0.033 0.967 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.084 0.916 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.633 13.000 13.276 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 N -0.068 5.068 4 O 0.037 5.963 5 C -0.100 4.100 6 C -0.252 4.252 7 C 0.401 3.599 8 O -0.390 6.390 9 N -0.339 5.339 10 C -0.005 4.005 11 C -0.121 4.121 12 H 0.129 0.871 13 C 0.024 3.976 14 N -0.373 5.373 15 C -0.372 4.372 16 H 0.087 0.913 17 C -0.206 4.206 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.213 1.213 23 C -0.166 4.166 24 H 0.151 0.849 25 C 0.409 3.591 26 F -0.169 7.169 27 F -0.154 7.154 28 F -0.150 7.150 29 C -0.027 4.027 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.244 0.756 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.217 0.783 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.773 14.217 13.067 21.209 hybrid contribution 0.101 -1.203 -0.989 1.561 sum 8.873 13.014 12.078 19.848 Atomic orbital electron populations 1.20302 0.84708 1.04697 1.03925 1.24872 0.99035 0.86114 0.98942 1.73672 0.89251 1.23581 1.20344 1.84574 1.21592 1.23028 1.67058 1.26955 1.00622 0.84088 0.98340 1.22300 0.92869 0.95474 1.14598 1.16319 0.84412 0.82394 0.76813 1.90846 1.17285 1.81417 1.49456 1.48054 1.04826 1.07406 1.73599 1.22468 0.99568 0.77180 1.01250 1.22822 0.91373 0.99011 0.98894 0.87134 1.21065 0.94098 0.94839 0.87571 1.42266 1.42349 1.47654 1.05026 1.19110 1.15853 1.19075 0.83149 0.91281 1.24720 0.98894 0.99275 0.97701 1.69637 1.26248 1.29006 1.33106 0.86272 0.77404 0.77317 0.85224 1.21219 1.21623 1.21257 1.23569 0.93018 0.99071 1.00990 0.84916 1.20151 0.84627 0.73946 0.80408 1.93182 1.67152 1.71371 1.85159 1.93224 1.87501 1.38636 1.96069 1.93240 1.90910 1.88188 1.42629 1.22218 0.81774 0.95894 1.02800 0.89723 0.90349 0.88330 0.75616 0.90698 0.87547 0.95446 0.94993 0.78254 0.93396 0.89793 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.15 36.01 0.37 -0.50 16 2 C 0.07 0.93 7.58 -79.77 -0.60 0.32 16 3 N -0.36 -4.53 12.01 34.78 0.42 -4.12 16 4 O 0.10 1.03 11.06 18.66 0.21 1.24 16 5 C -0.02 -0.16 10.83 30.41 0.33 0.16 16 6 C -0.25 -3.04 6.41 -102.89 -0.66 -3.70 16 7 C 0.61 9.00 7.85 -12.53 -0.10 8.90 16 8 O -0.51 -9.39 15.95 5.26 0.08 -9.31 16 9 N -0.60 -7.64 3.30 -171.65 -0.57 -8.20 16 10 C 0.12 1.60 6.32 -2.41 -0.02 1.59 16 11 C -0.10 -1.35 2.76 -88.35 -0.24 -1.60 16 12 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 13 C 0.15 2.82 4.12 -4.04 -0.02 2.80 16 14 N -0.73 -17.66 5.25 -59.91 -0.31 -17.97 16 15 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 19 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 C -0.15 -1.37 2.89 -88.79 -0.26 -1.62 16 24 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 25 C 0.46 5.07 2.35 37.16 0.09 5.16 16 26 F -0.19 -1.78 17.22 2.25 0.04 -1.74 16 27 F -0.17 -2.20 16.51 2.25 0.04 -2.16 16 28 F -0.17 -2.25 12.67 2.25 0.03 -2.22 16 29 C 0.10 0.86 4.16 -3.07 -0.01 0.84 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.23 7.11 -51.93 -0.37 0.86 16 33 H 0.23 1.20 4.83 -52.48 -0.25 0.94 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.11 1.91 7.42 -51.93 -0.39 1.52 16 36 H 0.03 0.54 7.39 -51.93 -0.38 0.16 16 37 H 0.03 0.62 5.65 -51.93 -0.29 0.33 16 38 H 0.38 9.65 7.39 -40.82 -0.30 9.35 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.08 0.73 5.92 -51.93 -0.31 0.42 16 41 H 0.09 0.47 7.10 -51.93 -0.37 0.10 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -34.10 348.48 -4.81 -38.91 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.32 Total: 4.78 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -1.37 Total: 5.16 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.26 Total: -57.38 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.29 Total: -8.07 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.10 Total: -6.12 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.10 -4.81 -38.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734512125.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.757 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds