Wall clock time and date at job start Wed Apr 1 2020 04:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29929 * 125.37864 * 2 1 4 4 C 1.36066 * 108.47867 * 180.16820 * 3 2 1 5 5 C 1.47421 * 126.45119 * 179.82835 * 4 3 2 6 6 O 1.21612 * 120.00172 * 179.68407 * 5 4 3 7 7 N 1.34773 * 119.99746 * 359.68927 * 5 4 3 8 8 C 1.48152 * 127.84121 * 0.02773 * 7 5 4 9 9 C 1.54385 * 104.61788 * 140.43358 * 8 7 5 10 10 H 1.08997 * 110.34181 * 264.88744 * 9 8 7 11 11 C 1.53006 * 110.34217 * 142.73513 * 9 8 7 12 12 F 1.39900 * 109.46764 * 61.45147 * 11 9 8 13 13 F 1.39897 * 109.47129 * 181.45126 * 11 9 8 14 14 F 1.39903 * 109.46814 * 301.45618 * 11 9 8 15 15 C 1.54289 * 104.96292 * 23.86907 * 9 8 7 16 16 H 1.08997 * 110.34385 * 118.86702 * 15 9 8 17 17 C 1.53007 * 110.33823 * 241.13028 * 15 9 8 18 18 N 1.46504 * 109.46733 * 184.99712 * 17 15 9 19 19 C 1.36934 * 119.99439 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00404 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99414 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00376 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99662 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47452 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47018 * 120.00035 * 23 21 19 26 26 H 1.48506 * 109.47015 * 239.99911 * 23 21 19 27 27 C 1.48151 * 127.83787 * 180.02562 * 7 5 4 28 28 C 1.36090 * 107.09884 * 359.56431 * 4 3 2 29 29 O 1.34049 * 125.37612 * 179.68393 * 2 1 3 30 30 H 1.08998 * 109.47294 * 180.29138 * 1 2 3 31 31 H 1.08999 * 109.47242 * 300.29081 * 1 2 3 32 32 H 1.09005 * 109.47325 * 60.29262 * 1 2 3 33 33 H 1.08992 * 110.40552 * 21.64493 * 8 7 5 34 34 H 1.09002 * 110.50433 * 259.26917 * 8 7 5 35 35 H 1.08999 * 109.46741 * 304.99585 * 17 15 9 36 36 H 1.08994 * 109.47281 * 64.99739 * 17 15 9 37 37 H 0.97004 * 119.99936 * 0.02562 * 18 17 15 38 38 H 0.96998 * 120.00400 * 180.02562 * 22 21 19 39 39 H 1.09008 * 110.40443 * 338.35021 * 27 7 5 40 40 H 1.09001 * 110.40730 * 100.65879 * 27 7 5 41 41 H 1.07999 * 126.52235 * 180.24168 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0038 5 6 4.7439 1.5438 -0.0087 6 8 5.8605 1.0618 -0.0060 7 7 4.5878 2.8824 -0.0161 8 6 3.3204 3.6497 -0.0197 9 6 3.5840 4.8419 0.9251 10 1 3.2287 4.6146 1.9302 11 6 2.9008 6.1033 0.3931 12 9 1.5182 5.8969 0.3383 13 9 3.1784 7.1783 1.2442 14 9 3.3810 6.3879 -0.8898 15 6 5.1165 5.0206 0.9230 16 1 5.3824 6.0069 0.5430 17 6 5.6768 4.8237 2.3331 18 7 7.1128 5.1140 2.3329 19 6 7.8333 5.0052 3.4922 20 1 7.3433 4.7050 4.4065 21 6 9.1939 5.2808 3.4921 22 7 9.7911 5.6472 2.3779 23 14 10.1771 5.1317 5.0734 24 1 9.2786 4.7073 6.1769 25 1 11.2525 4.1233 4.8944 26 1 10.7819 6.4466 5.4061 27 6 5.6447 3.9206 -0.0223 28 6 3.5659 -0.6970 0.0038 29 8 2.2831 -1.0930 0.0060 30 1 -0.3634 -1.0276 0.0052 31 1 -0.3634 0.5183 0.8873 32 1 -0.3634 0.5093 -0.8926 33 1 2.5038 3.0363 0.3609 34 1 3.0917 4.0044 -1.0247 35 1 5.1697 5.4983 3.0230 36 1 5.5146 3.7928 2.6479 37 1 7.5529 5.3840 1.5117 38 1 10.7418 5.8394 2.3778 39 1 6.5815 3.5116 0.3564 40 1 5.7829 4.3162 -1.0286 41 1 4.4361 -1.3367 0.0070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734512269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:29 Heat of formation + Delta-G solvation = -140.817115 kcal Electronic energy + Delta-G solvation = -31515.015661 eV Core-core repulsion = 26596.539663 eV Total energy + Delta-G solvation = -4918.475998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.09618 -47.58827 -47.53229 -43.71495 -39.99183 -37.86226 -35.26441 -34.58283 -32.66913 -32.31611 -31.13091 -29.09801 -28.18365 -26.24014 -25.71450 -23.99053 -23.09101 -21.88310 -21.70918 -20.25386 -19.83859 -18.50391 -18.22546 -17.92100 -17.45933 -17.20312 -17.03886 -16.63117 -15.77783 -15.33065 -14.71474 -14.57298 -14.44056 -14.40690 -14.17573 -14.02600 -13.97376 -13.84768 -13.67290 -13.66766 -13.55630 -13.35895 -13.26245 -12.96934 -12.84565 -12.41550 -11.96430 -11.82107 -11.64041 -11.51914 -11.07878 -10.96918 -10.77701 -10.64045 -10.51018 -10.19342 -10.01481 -9.70499 -9.29554 -8.89452 -8.72483 -6.93806 -5.75556 -3.05007 0.87797 1.73455 2.27324 2.59649 2.90301 3.19532 3.45513 3.50723 3.52309 3.53186 3.76985 3.84167 4.00013 4.37126 4.50603 4.58754 4.64773 4.75830 4.89689 4.94763 4.97983 5.10603 5.19300 5.25642 5.31222 5.38758 5.53301 5.59480 5.68532 5.71838 5.86796 5.97622 6.10220 6.27390 6.30819 6.61012 6.71970 7.16101 7.46435 7.71552 8.05860 8.42159 9.54021 10.08284 10.43338 11.47216 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009394 B = 0.003731 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.005042 B = 7502.179957 C = 9629.181872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.196 3.804 3 N -0.462 5.462 4 C -0.062 4.062 5 C 0.621 3.379 6 O -0.523 6.523 7 N -0.601 5.601 8 C 0.105 3.895 9 C -0.150 4.150 10 H 0.127 0.873 11 C 0.462 3.538 12 F -0.185 7.185 13 F -0.176 7.176 14 F -0.180 7.180 15 C -0.101 4.101 16 H 0.099 0.901 17 C 0.164 3.836 18 N -0.730 5.730 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.111 3.889 28 C 0.013 3.987 29 O -0.197 6.197 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.026 0.974 36 H 0.023 0.977 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.823 -9.177 -8.267 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.013 4.013 3 N -0.194 5.194 4 C -0.182 4.182 5 C 0.409 3.591 6 O -0.399 6.399 7 N -0.333 5.333 8 C -0.018 4.018 9 C -0.171 4.171 10 H 0.145 0.855 11 C 0.407 3.593 12 F -0.166 7.166 13 F -0.157 7.157 14 F -0.162 7.162 15 C -0.121 4.121 16 H 0.117 0.883 17 C 0.037 3.963 18 N -0.374 5.374 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.011 4.011 28 C -0.060 4.060 29 O -0.083 6.083 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.141 0.859 34 H 0.097 0.903 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -22.402 -8.960 -8.101 25.451 hybrid contribution 0.938 -0.253 0.524 1.104 sum -21.464 -9.213 -7.577 24.556 Atomic orbital electron populations 1.20322 0.80851 1.04974 1.05420 1.26407 0.96690 0.78412 0.99794 1.70693 1.00834 1.29517 1.18316 1.21719 0.91853 0.92951 1.11665 1.16226 0.86230 0.79908 0.76761 1.90896 1.24260 1.74040 1.50727 1.48505 1.08869 1.04139 1.71796 1.22595 0.88855 0.91404 0.98981 1.23534 0.98582 0.91617 1.03343 0.85497 1.20340 0.76782 0.86318 0.75825 1.93174 1.32112 1.95027 1.96299 1.93224 1.93364 1.58626 1.70521 1.93177 1.87930 1.94525 1.40565 1.22401 0.89839 1.00414 0.99431 0.88271 1.20664 0.87048 0.97868 0.90750 1.42305 1.02252 1.82526 1.10345 1.19221 0.90679 1.38741 0.88471 0.91141 1.24736 0.96711 1.02193 0.97128 1.69659 1.10133 1.52771 1.25379 0.86114 0.80154 0.77189 0.82698 1.20577 1.21822 1.21855 1.22573 0.92824 0.86426 0.99259 1.25283 0.84757 0.95609 1.00376 1.84400 1.16752 1.37870 1.69272 0.89206 0.88167 0.88222 0.85928 0.90327 0.95663 0.95874 0.78142 0.93506 0.87369 0.90551 0.75163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 36.01 0.38 0.15 16 2 C 0.20 1.70 8.30 -13.08 -0.11 1.60 16 3 N -0.46 -5.23 8.39 -7.65 -0.06 -5.29 16 4 C -0.06 -0.81 6.86 -83.02 -0.57 -1.38 16 5 C 0.62 9.98 7.91 -12.52 -0.10 9.88 16 6 O -0.52 -10.10 17.16 5.27 0.09 -10.01 16 7 N -0.60 -9.02 3.32 -170.58 -0.57 -9.58 16 8 C 0.11 1.28 5.97 -2.41 -0.01 1.27 16 9 C -0.15 -1.90 2.72 -89.22 -0.24 -2.14 16 10 H 0.13 1.50 7.72 -51.93 -0.40 1.10 16 11 C 0.46 5.75 2.51 37.16 0.09 5.84 16 12 F -0.18 -2.15 17.11 2.25 0.04 -2.11 16 13 F -0.18 -2.47 17.07 2.25 0.04 -2.43 16 14 F -0.18 -2.33 16.04 2.25 0.04 -2.29 16 15 C -0.10 -1.59 2.39 -89.23 -0.21 -1.81 16 16 H 0.10 1.59 7.39 -51.93 -0.38 1.20 16 17 C 0.16 3.27 5.37 -4.04 -0.02 3.24 16 18 N -0.73 -18.39 5.21 -59.90 -0.31 -18.71 16 19 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 23 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 C 0.11 1.79 6.47 -2.42 -0.02 1.78 16 28 C 0.01 0.14 11.95 29.96 0.36 0.50 16 29 O -0.20 -1.83 10.73 6.52 0.07 -1.76 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.12 1.43 5.46 -51.93 -0.28 1.14 16 34 H 0.08 0.90 7.32 -51.93 -0.38 0.52 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.02 0.49 8.13 -51.93 -0.42 0.06 16 37 H 0.38 10.10 7.61 -40.82 -0.31 9.79 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.11 2.14 7.30 -51.92 -0.38 1.76 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.23 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -34.52 361.24 -4.87 -39.38 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.64 Total: 5.67 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -0.70 Total: 11.57 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.22 Total: -61.19 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.16 Total: -11.78 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.11 Total: -6.83 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.52 -4.87 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734512269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.434 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds