Wall clock time and date at job start Wed Apr 1 2020 04:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29929 * 125.37864 * 2 1 4 4 C 1.36066 * 108.47867 * 180.16820 * 3 2 1 5 5 C 1.47421 * 126.45119 * 179.82835 * 4 3 2 6 6 O 1.21612 * 120.00172 * 179.68407 * 5 4 3 7 7 N 1.34773 * 119.99746 * 359.68927 * 5 4 3 8 8 C 1.48152 * 127.84121 * 0.02773 * 7 5 4 9 9 C 1.54385 * 104.61788 * 140.43358 * 8 7 5 10 10 H 1.08997 * 110.34181 * 264.88744 * 9 8 7 11 11 C 1.53006 * 110.34217 * 142.73513 * 9 8 7 12 12 F 1.39900 * 109.46764 * 61.45147 * 11 9 8 13 13 F 1.39897 * 109.47129 * 181.45126 * 11 9 8 14 14 F 1.39903 * 109.46814 * 301.45618 * 11 9 8 15 15 C 1.54289 * 104.96292 * 23.86907 * 9 8 7 16 16 H 1.08997 * 110.34385 * 118.86702 * 15 9 8 17 17 C 1.53007 * 110.33823 * 241.13028 * 15 9 8 18 18 N 1.46504 * 109.46733 * 184.99712 * 17 15 9 19 19 C 1.36934 * 119.99439 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00404 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99414 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00376 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99662 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47452 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47018 * 120.00035 * 23 21 19 26 26 H 1.48506 * 109.47015 * 239.99911 * 23 21 19 27 27 C 1.48151 * 127.83787 * 180.02562 * 7 5 4 28 28 C 1.36090 * 107.09884 * 359.56431 * 4 3 2 29 29 O 1.34049 * 125.37612 * 179.68393 * 2 1 3 30 30 H 1.08998 * 109.47294 * 180.29138 * 1 2 3 31 31 H 1.08999 * 109.47242 * 300.29081 * 1 2 3 32 32 H 1.09005 * 109.47325 * 60.29262 * 1 2 3 33 33 H 1.08992 * 110.40552 * 21.64493 * 8 7 5 34 34 H 1.09002 * 110.50433 * 259.26917 * 8 7 5 35 35 H 1.08999 * 109.46741 * 304.99585 * 17 15 9 36 36 H 1.08994 * 109.47281 * 64.99739 * 17 15 9 37 37 H 0.97004 * 119.99936 * 0.02562 * 18 17 15 38 38 H 0.96998 * 120.00400 * 180.02562 * 22 21 19 39 39 H 1.09008 * 110.40443 * 338.35021 * 27 7 5 40 40 H 1.09001 * 110.40730 * 100.65879 * 27 7 5 41 41 H 1.07999 * 126.52235 * 180.24168 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0038 5 6 4.7439 1.5438 -0.0087 6 8 5.8605 1.0618 -0.0060 7 7 4.5878 2.8824 -0.0161 8 6 3.3204 3.6497 -0.0197 9 6 3.5840 4.8419 0.9251 10 1 3.2287 4.6146 1.9302 11 6 2.9008 6.1033 0.3931 12 9 1.5182 5.8969 0.3383 13 9 3.1784 7.1783 1.2442 14 9 3.3810 6.3879 -0.8898 15 6 5.1165 5.0206 0.9230 16 1 5.3824 6.0069 0.5430 17 6 5.6768 4.8237 2.3331 18 7 7.1128 5.1140 2.3329 19 6 7.8333 5.0052 3.4922 20 1 7.3433 4.7050 4.4065 21 6 9.1939 5.2808 3.4921 22 7 9.7911 5.6472 2.3779 23 14 10.1771 5.1317 5.0734 24 1 9.2786 4.7073 6.1769 25 1 11.2525 4.1233 4.8944 26 1 10.7819 6.4466 5.4061 27 6 5.6447 3.9206 -0.0223 28 6 3.5659 -0.6970 0.0038 29 8 2.2831 -1.0930 0.0060 30 1 -0.3634 -1.0276 0.0052 31 1 -0.3634 0.5183 0.8873 32 1 -0.3634 0.5093 -0.8926 33 1 2.5038 3.0363 0.3609 34 1 3.0917 4.0044 -1.0247 35 1 5.1697 5.4983 3.0230 36 1 5.5146 3.7928 2.6479 37 1 7.5529 5.3840 1.5117 38 1 10.7418 5.8394 2.3778 39 1 6.5815 3.5116 0.3564 40 1 5.7829 4.3162 -1.0286 41 1 4.4361 -1.3367 0.0070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734512269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:29 Heat of formation + Delta-G solvation = -165.628641 kcal Electronic energy + Delta-G solvation = -31516.091570 eV Core-core repulsion = 26596.539663 eV Total energy + Delta-G solvation = -4919.551906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.12410 -48.59415 -48.57971 -44.48622 -41.22143 -39.16750 -36.53588 -35.97543 -34.03293 -33.12844 -32.75931 -30.61324 -28.86395 -27.63244 -26.92207 -25.52545 -24.43570 -23.07197 -22.63470 -21.49149 -20.89410 -19.57716 -19.48797 -19.11545 -18.72383 -18.49505 -17.96332 -17.66210 -16.87755 -16.68477 -16.51613 -15.75202 -15.52358 -15.47749 -15.28817 -15.16612 -15.13851 -15.00179 -14.85068 -14.76134 -14.71280 -14.52699 -14.26256 -13.86586 -13.78472 -13.36212 -13.23374 -13.22676 -13.00468 -12.83823 -12.64268 -12.36824 -12.33552 -12.13958 -11.97251 -11.72429 -11.64485 -11.37581 -10.99648 -10.18669 -9.87426 -9.04343 -7.97211 -5.26661 0.01274 0.91430 1.44009 1.45786 1.46995 1.56688 1.62110 1.84216 2.09840 2.51863 2.65076 2.74121 2.82599 2.95635 3.35313 3.40252 3.57949 3.61529 3.74756 3.76890 3.90159 4.10590 4.23670 4.35586 4.38777 4.49354 4.52987 4.60092 4.66394 4.73227 4.74371 4.78933 4.83043 4.98166 5.03276 5.16532 5.33626 5.46899 6.23000 6.24316 6.43151 6.86312 7.31339 8.03390 8.27614 9.26298 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009394 B = 0.003731 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.005042 B = 7502.179957 C = 9629.181872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.208 3.792 3 N -0.484 5.484 4 C -0.093 4.093 5 C 0.615 3.385 6 O -0.570 6.570 7 N -0.603 5.603 8 C 0.113 3.887 9 C -0.140 4.140 10 H 0.140 0.860 11 C 0.470 3.530 12 F -0.174 7.174 13 F -0.185 7.185 14 F -0.182 7.182 15 C -0.091 4.091 16 H 0.099 0.901 17 C 0.167 3.833 18 N -0.742 5.742 19 C -0.247 4.247 20 H 0.074 0.926 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.973 3.027 24 H -0.267 1.267 25 H -0.294 1.294 26 H -0.290 1.290 27 C 0.113 3.887 28 C 0.028 3.972 29 O -0.193 6.193 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.135 0.865 34 H 0.092 0.908 35 H 0.033 0.967 36 H 0.014 0.986 37 H 0.376 0.624 38 H 0.252 0.748 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.687 -9.859 -7.977 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.001 4.001 3 N -0.214 5.214 4 C -0.211 4.211 5 C 0.405 3.595 6 O -0.450 6.450 7 N -0.334 5.334 8 C -0.010 4.010 9 C -0.160 4.160 10 H 0.158 0.842 11 C 0.416 3.584 12 F -0.156 7.156 13 F -0.166 7.166 14 F -0.163 7.163 15 C -0.110 4.110 16 H 0.117 0.883 17 C 0.041 3.959 18 N -0.385 5.385 19 C -0.378 4.378 20 H 0.092 0.908 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.802 3.198 24 H -0.191 1.191 25 H -0.222 1.222 26 H -0.217 1.217 27 C -0.009 4.009 28 C -0.046 4.046 29 O -0.080 6.080 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.153 0.847 34 H 0.111 0.889 35 H 0.051 0.949 36 H 0.032 0.968 37 H 0.208 0.792 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -25.341 -9.623 -7.801 28.207 hybrid contribution 1.695 -0.098 0.411 1.747 sum -23.646 -9.721 -7.390 26.612 Atomic orbital electron populations 1.20656 0.77326 1.06859 1.06686 1.27418 0.98154 0.77510 0.97063 1.70613 1.00124 1.30672 1.20029 1.21382 0.91699 0.93355 1.14700 1.16703 0.86714 0.80297 0.75770 1.90855 1.26267 1.74877 1.53008 1.48583 1.09490 1.04011 1.71306 1.22711 0.87794 0.90816 0.99670 1.23451 0.96012 0.92131 1.04444 0.84204 1.20132 0.77109 0.85631 0.75550 1.93198 1.31224 1.94921 1.96233 1.93214 1.93489 1.59053 1.70848 1.93182 1.88017 1.94504 1.40613 1.22168 0.92062 1.00145 0.96666 0.88267 1.20734 0.84524 0.97099 0.93575 1.42483 1.04330 1.82432 1.09225 1.19607 0.91257 1.37492 0.89472 0.90786 1.25561 0.97878 1.02798 1.00273 1.69809 1.10091 1.54352 1.27404 0.85085 0.78503 0.76832 0.79395 1.19090 1.22165 1.21706 1.22408 0.91693 0.86841 0.99952 1.25619 0.85712 0.95003 0.98266 1.84454 1.16287 1.38076 1.69146 0.87060 0.86853 0.86701 0.84730 0.88947 0.94898 0.96823 0.79172 0.93928 0.91530 0.88925 0.73427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 71.24 0.75 0.51 16 2 C 0.21 3.07 8.30 88.39 0.73 3.81 16 3 N -0.48 -10.06 8.39 -293.04 -2.46 -12.52 16 4 C -0.09 -2.36 6.86 40.41 0.28 -2.08 16 5 C 0.62 20.22 7.91 86.66 0.69 20.90 16 6 O -0.57 -23.13 17.16 -4.07 -0.07 -23.20 16 7 N -0.60 -18.17 3.32 -811.86 -2.69 -20.86 16 8 C 0.11 2.57 5.97 86.53 0.52 3.09 16 9 C -0.14 -3.32 2.72 -9.88 -0.03 -3.34 16 10 H 0.14 3.02 7.72 -2.39 -0.02 3.00 16 11 C 0.47 10.74 2.51 71.98 0.18 10.92 16 12 F -0.17 -3.57 17.11 44.97 0.77 -2.80 16 13 F -0.18 -4.87 17.07 44.97 0.77 -4.10 16 14 F -0.18 -4.34 16.04 44.97 0.72 -3.62 16 15 C -0.09 -2.85 2.39 -9.89 -0.02 -2.87 16 16 H 0.10 3.15 7.39 -2.39 -0.02 3.14 16 17 C 0.17 6.71 5.37 86.38 0.46 7.17 16 18 N -0.74 -38.31 5.21 -343.44 -1.79 -40.10 16 19 C -0.25 -14.12 9.99 84.04 0.84 -13.28 16 20 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 22 N -0.97 -60.20 13.06 21.65 0.28 -59.91 16 23 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 27 C 0.11 3.77 6.47 86.52 0.56 4.33 16 28 C 0.03 0.56 11.95 67.32 0.80 1.36 16 29 O -0.19 -3.17 10.73 0.41 0.00 -3.17 16 30 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 33 H 0.14 2.85 5.46 -2.39 -0.01 2.84 16 34 H 0.09 1.90 7.32 -2.39 -0.02 1.88 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.01 0.59 8.13 -2.39 -0.02 0.57 16 37 H 0.38 20.49 7.61 -92.71 -0.71 19.79 16 38 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.07 2.81 7.30 -2.38 -0.02 2.79 16 40 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.25 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -76.26 361.24 4.19 -72.07 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.40 Total: 22.17 kcal Atomic # 6 Polarization: 20.50 SS G_CDS: 6.23 Total: 26.72 kcal Atomic # 7 Polarization: -126.74 SS G_CDS: -6.66 Total: -133.40 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.07 Total: -26.37 kcal Atomic # 9 Polarization: -12.78 SS G_CDS: 2.26 Total: -10.52 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -76.26 4.19 -72.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734512269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.555 kcal (2) G-P(sol) polarization free energy of solvation -76.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds