Wall clock time and date at job start Wed Apr 1 2020 04:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00053 * 2 1 4 4 H 1.48504 * 109.47558 * 264.65005 * 3 2 1 5 5 H 1.48500 * 109.47341 * 24.65320 * 3 2 1 6 6 H 1.48504 * 109.47264 * 144.65206 * 3 2 1 7 7 C 1.38812 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00209 * 336.13405 * 7 2 1 9 9 N 1.36939 * 120.00133 * 156.12307 * 7 2 1 10 10 C 1.47422 * 125.64755 * 161.71674 * 9 7 2 11 11 C 1.54905 * 104.83376 * 155.91226 * 10 9 7 12 12 C 1.55157 * 101.61697 * 36.99215 * 11 10 9 13 13 H 1.08996 * 110.72441 * 82.87811 * 12 11 10 14 14 C 1.53002 * 110.72400 * 206.15900 * 12 11 10 15 15 C 1.52992 * 109.47385 * 184.99984 * 14 12 11 16 16 N 1.46497 * 109.47497 * 179.97438 * 15 14 12 17 17 C 1.34777 * 120.00491 * 179.97438 * 16 15 14 18 18 O 1.21689 * 119.99751 * 0.02562 * 17 16 15 19 19 C 1.46725 * 120.00166 * 179.97438 * 17 16 15 20 20 O 1.35342 * 126.64009 * 0.02562 * 19 17 16 21 21 C 1.33670 * 107.67916 * 179.97438 * 20 19 17 22 22 N 1.30613 * 109.15632 * 0.02562 * 21 20 19 23 23 C 1.33698 * 108.99270 * 359.76270 * 22 21 20 24 24 C 1.50700 * 126.27138 * 180.25824 * 23 22 21 25 25 F 1.39898 * 109.47120 * 270.13739 * 24 23 22 26 26 F 1.39905 * 109.47159 * 30.13794 * 24 23 22 27 27 F 1.39898 * 109.47363 * 150.13333 * 24 23 22 28 28 C 1.47016 * 125.64889 * 341.76928 * 9 7 2 29 29 H 0.97003 * 120.00121 * 359.97438 * 1 2 3 30 30 H 1.09003 * 110.36661 * 37.07267 * 10 9 7 31 31 H 1.09002 * 110.46183 * 274.79726 * 10 9 7 32 32 H 1.08999 * 111.00841 * 155.08133 * 11 10 9 33 33 H 1.09003 * 111.00593 * 278.90318 * 11 10 9 34 34 H 1.09004 * 109.46815 * 304.99557 * 14 12 11 35 35 H 1.09001 * 109.47134 * 64.99118 * 14 12 11 36 36 H 1.09004 * 109.46796 * 299.99585 * 15 14 12 37 37 H 1.09001 * 109.47692 * 59.99475 * 15 14 12 38 38 H 0.97003 * 119.99787 * 0.02562 * 16 15 14 39 39 H 1.07999 * 125.41674 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.88051 * 300.42999 * 28 9 7 41 41 H 1.08992 * 109.88616 * 61.59860 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6108 1.9812 -1.3940 5 1 1.3957 2.6826 0.5840 6 1 3.4867 1.4754 0.8100 7 6 2.0102 -1.2021 0.0005 8 1 1.5395 -2.0973 0.3794 9 7 3.2917 -1.2531 -0.4795 10 6 4.2697 -2.3219 -0.2063 11 6 5.2603 -2.2665 -1.3958 12 6 5.3532 -0.7394 -1.6543 13 1 6.0697 -0.2763 -0.9759 14 6 5.7255 -0.4586 -3.1115 15 6 5.9311 1.0451 -3.3047 16 7 6.2881 1.3140 -4.6998 17 6 6.5177 2.5787 -5.1050 18 8 6.4288 3.4973 -4.3119 19 6 6.8758 2.8479 -6.5022 20 8 7.0120 1.9344 -7.4915 21 6 7.3444 2.5909 -8.6074 22 7 7.4191 3.8686 -8.3468 23 6 7.1311 4.0670 -7.0563 24 6 7.0973 5.3948 -6.3443 25 9 8.3642 5.6761 -5.8217 26 9 6.7319 6.3990 -7.2473 27 9 6.1645 5.3420 -5.3031 28 6 3.9205 -0.2505 -1.3517 29 1 -0.4850 0.8401 0.0004 30 1 3.7724 -3.2913 -0.1715 31 1 4.7916 -2.1303 0.7313 32 1 6.2312 -2.6749 -1.1152 33 1 4.8567 -2.7860 -2.2650 34 1 6.6467 -0.9860 -3.3592 35 1 4.9231 -0.8025 -3.7642 36 1 5.0099 1.5725 -3.0569 37 1 6.7334 1.3890 -2.6519 38 1 6.3586 0.5818 -5.3321 39 1 7.5236 2.1370 -9.5708 40 1 3.3564 -0.1608 -2.2800 41 1 3.9569 0.7128 -0.8430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753329424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:46 Heat of formation + Delta-G solvation = -123.145656 kcal Electronic energy + Delta-G solvation = -30688.468844 eV Core-core repulsion = 25770.759138 eV Total energy + Delta-G solvation = -4917.709706 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.32341 -47.88072 -47.75271 -44.32731 -40.02281 -38.25593 -36.17041 -35.47304 -33.14357 -32.05908 -31.33645 -29.39268 -27.81682 -26.80364 -24.97258 -24.25087 -23.02197 -22.35205 -21.39298 -20.31448 -20.08624 -19.41515 -18.81407 -18.49178 -18.17437 -17.57130 -17.01557 -16.51792 -16.42060 -16.11036 -15.51224 -15.07481 -14.77889 -14.60721 -14.51868 -14.42902 -14.20149 -14.04635 -13.89734 -13.74932 -13.53312 -13.05318 -12.79375 -12.74173 -12.42952 -12.42514 -12.18259 -11.68131 -11.65928 -11.45063 -11.13525 -10.92410 -10.75198 -10.54140 -10.37996 -10.19472 -10.07073 -9.83267 -9.47297 -9.29822 -8.60625 -7.05665 -5.95032 -3.23553 -0.10615 1.48878 1.50773 2.12718 2.44053 2.58908 3.10527 3.36890 3.41007 3.50898 3.53442 3.86055 4.07517 4.26848 4.42262 4.55805 4.59281 4.66718 4.85986 4.89773 5.11938 5.14095 5.29631 5.36931 5.43661 5.59339 5.71117 5.79954 5.90990 5.98201 6.07312 6.13553 6.27879 6.45862 6.53046 6.59042 6.75115 6.78367 6.92675 7.53310 7.72636 8.31359 8.84289 9.69826 10.18847 11.21405 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.002693 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.391771 B =10394.183371 C =11460.459077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.022 3.978 3 Si 0.886 3.114 4 H -0.285 1.285 5 H -0.303 1.303 6 H -0.280 1.280 7 C -0.244 4.244 8 H 0.092 0.908 9 N -0.611 5.611 10 C 0.131 3.869 11 C -0.124 4.124 12 C -0.099 4.099 13 H 0.078 0.922 14 C -0.117 4.117 15 C 0.111 3.889 16 N -0.706 5.706 17 C 0.589 3.411 18 O -0.482 6.482 19 C -0.023 4.023 20 O -0.175 6.175 21 C 0.216 3.784 22 N -0.458 5.458 23 C -0.031 4.031 24 C 0.551 3.449 25 F -0.167 7.167 26 F -0.166 7.166 27 F -0.138 7.138 28 C 0.123 3.877 29 H 0.263 0.737 30 H 0.048 0.952 31 H 0.024 0.976 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.406 0.594 39 H 0.271 0.729 40 H 0.040 0.960 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.523 2.491 -19.103 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.232 1.232 6 H -0.206 1.206 7 C -0.371 4.371 8 H 0.110 0.890 9 N -0.338 5.338 10 C 0.006 3.994 11 C -0.163 4.163 12 C -0.119 4.119 13 H 0.096 0.904 14 C -0.155 4.155 15 C -0.011 4.011 16 N -0.357 5.357 17 C 0.371 3.629 18 O -0.357 6.357 19 C -0.082 4.082 20 O -0.060 6.060 21 C -0.010 4.010 22 N -0.185 5.185 23 C -0.156 4.156 24 C 0.496 3.504 25 F -0.148 7.148 26 F -0.147 7.147 27 F -0.119 7.119 28 C -0.002 4.002 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.241 0.759 39 H 0.286 0.714 40 H 0.058 0.942 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 19.336 3.672 -18.869 27.265 hybrid contribution 0.330 0.359 0.006 0.488 sum 19.666 4.031 -18.863 27.546 Atomic orbital electron populations 1.69857 1.05568 1.26623 1.52992 1.24957 0.95137 0.97395 1.00182 0.86935 0.78908 0.84629 0.77762 1.21286 1.23166 1.20633 1.18656 0.85298 0.95612 1.37549 0.89022 1.44794 1.10935 1.22967 1.55058 1.21615 0.90204 0.93066 0.94560 1.22777 0.99183 0.94609 0.99695 1.22126 0.98028 0.97219 0.94511 0.90362 1.21794 1.02291 0.93503 0.97959 1.21731 1.02124 0.97495 0.79722 1.45917 1.69176 1.07194 1.13366 1.16361 0.79082 0.84502 0.82953 1.91077 1.50463 1.43253 1.50910 1.23231 1.06638 0.87453 0.90834 1.84605 1.65174 1.38076 1.18162 1.28554 0.95370 0.85566 0.91481 1.70198 1.17993 1.17551 1.12715 1.21741 1.07521 0.94182 0.92199 1.16737 0.75116 0.81583 0.77012 1.93244 1.40370 1.94052 1.87117 1.93239 1.91478 1.62528 1.67471 1.93425 1.64837 1.96035 1.57557 1.21750 0.90894 0.92969 0.94539 0.92702 0.93367 0.95867 0.91564 0.91232 0.91035 0.90560 0.90025 0.90427 0.75857 0.71409 0.94208 0.95793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.24 13.97 55.49 0.78 -27.46 16 2 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 3 Si 0.89 23.27 24.40 -169.99 -4.15 19.12 16 4 H -0.29 -7.23 6.83 56.52 0.39 -6.84 16 5 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 6 H -0.28 -7.25 6.90 56.52 0.39 -6.86 16 7 C -0.24 -6.96 10.56 -15.06 -0.16 -7.12 16 8 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 9 N -0.61 -14.64 3.20 -170.05 -0.54 -15.19 16 10 C 0.13 2.48 7.23 -2.53 -0.02 2.46 16 11 C -0.12 -1.78 6.53 -24.58 -0.16 -1.94 16 12 C -0.10 -1.48 2.93 -88.76 -0.26 -1.74 16 13 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 14 C -0.12 -1.30 4.73 -26.73 -0.13 -1.43 16 15 C 0.11 1.34 5.56 -4.05 -0.02 1.32 16 16 N -0.71 -7.13 5.55 -61.61 -0.34 -7.47 16 17 C 0.59 7.20 7.73 -12.83 -0.10 7.10 16 18 O -0.48 -7.59 13.14 5.20 0.07 -7.52 16 19 C -0.02 -0.24 7.14 -36.84 -0.26 -0.50 16 20 O -0.18 -1.20 10.57 4.41 0.05 -1.15 16 21 C 0.22 1.10 13.21 52.24 0.69 1.79 16 22 N -0.46 -4.29 11.21 -10.89 -0.12 -4.42 16 23 C -0.03 -0.36 6.49 -82.47 -0.54 -0.89 16 24 C 0.55 7.00 3.34 36.01 0.12 7.12 16 25 F -0.17 -2.13 17.30 2.25 0.04 -2.09 16 26 F -0.17 -2.07 17.27 2.25 0.04 -2.03 16 27 F -0.14 -2.01 13.47 2.25 0.03 -1.98 16 28 C 0.12 2.59 4.18 -3.04 -0.01 2.58 16 29 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.86 7.94 -51.93 -0.41 0.44 16 36 H 0.08 1.22 7.69 -51.93 -0.40 0.82 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.41 2.87 8.27 -40.82 -0.34 2.54 16 39 H 0.27 -0.28 8.06 -52.49 -0.42 -0.71 16 40 H 0.04 0.87 7.68 -51.93 -0.40 0.47 16 41 H 0.02 0.57 3.53 -51.93 -0.18 0.38 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -36.01 352.44 -4.48 -40.49 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: -4.69 Total: -4.91 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -0.94 Total: 9.30 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.23 Total: -54.53 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.11 Total: -8.67 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.11 Total: -6.10 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.15 Total: 19.12 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.01 -4.48 -40.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753329424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.656 kcal (2) G-P(sol) polarization free energy of solvation -36.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds