Wall clock time and date at job start Wed Apr 1 2020 04:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 119.99878 * 2 1 4 4 H 1.48498 * 109.47422 * 274.45831 * 3 2 1 5 5 H 1.48506 * 109.47314 * 34.45505 * 3 2 1 6 6 H 1.48504 * 109.47294 * 154.45435 * 3 2 1 7 7 C 1.38817 * 119.99968 * 180.27594 * 2 1 3 8 8 H 1.08004 * 119.99787 * 353.93040 * 7 2 1 9 9 N 1.36933 * 119.99965 * 173.93352 * 7 2 1 10 10 C 1.46494 * 119.99906 * 184.81078 * 9 7 2 11 11 C 1.53007 * 109.46881 * 174.88193 * 10 9 7 12 12 N 1.46490 * 110.01695 * 53.31821 * 11 10 9 13 13 C 1.34782 * 120.00286 * 62.41523 * 12 11 10 14 14 O 1.21610 * 119.99817 * 5.02512 * 13 12 11 15 15 C 1.47421 * 120.00074 * 185.02259 * 13 12 11 16 16 C 1.36089 * 126.44968 * 179.97438 * 15 13 12 17 17 O 1.34248 * 106.94988 * 179.97438 * 16 15 13 18 18 C 1.34048 * 108.23009 * 359.97438 * 17 16 15 19 19 C 1.50696 * 125.38019 * 179.97438 * 18 17 16 20 20 F 1.39902 * 109.47350 * 270.03066 * 19 18 17 21 21 F 1.39903 * 109.47351 * 30.02914 * 19 18 17 22 22 F 1.39900 * 109.47554 * 150.02873 * 19 18 17 23 23 N 1.29937 * 109.24216 * 359.74651 * 18 17 16 24 24 C 1.54265 * 110.03391 * 291.87366 * 11 10 9 25 25 C 1.54894 * 104.19649 * 217.10835 * 24 11 10 26 26 C 1.54884 * 102.74744 * 37.94051 * 25 24 11 27 27 C 1.53879 * 110.03201 * 174.70865 * 11 10 9 28 28 H 0.96995 * 120.00328 * 359.72303 * 1 2 3 29 29 H 0.96999 * 119.99893 * 4.81375 * 9 7 2 30 30 H 1.08991 * 109.47470 * 294.88235 * 10 9 7 31 31 H 1.09001 * 109.47025 * 54.88709 * 10 9 7 32 32 H 0.97006 * 120.00305 * 242.41964 * 12 11 10 33 33 H 1.08005 * 126.52068 * 0.02562 * 16 15 13 34 34 H 1.09005 * 110.48420 * 335.78243 * 24 11 10 35 35 H 1.08996 * 110.48839 * 98.42592 * 24 11 10 36 36 H 1.08993 * 110.75266 * 279.62591 * 25 24 11 37 37 H 1.09004 * 110.75273 * 156.25553 * 25 24 11 38 38 H 1.09000 * 110.48564 * 203.37862 * 26 25 24 39 39 H 1.09007 * 110.48872 * 80.74132 * 26 25 24 40 40 H 1.08996 * 110.03201 * 238.57062 * 27 11 10 41 41 H 1.09001 * 110.03233 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4034 2.1008 -1.3958 5 1 1.4978 2.6237 0.7921 6 1 3.5916 1.4148 0.6038 7 6 2.0103 -1.2022 -0.0058 8 1 1.4748 -2.1353 0.0886 9 7 3.3739 -1.2049 -0.1311 10 6 4.0966 -2.4742 -0.2433 11 6 5.5793 -2.1960 -0.4988 12 7 6.1023 -1.2868 0.5238 13 6 6.1097 -1.6612 1.8186 14 8 5.7679 -2.7866 2.1279 15 6 6.5320 -0.7067 2.8596 16 6 6.5890 -0.9435 4.1985 17 8 7.0236 0.1869 4.7777 18 6 7.2298 1.0982 3.8165 19 6 7.7200 2.5057 4.0392 20 9 6.6257 3.3553 4.2341 21 9 8.5436 2.5394 5.1695 22 9 8.4457 2.9293 2.9207 23 7 6.9448 0.5747 2.6619 24 6 5.7676 -1.5806 -1.9008 25 6 7.0910 -2.2011 -2.4133 26 6 7.0152 -3.6543 -1.8827 27 6 6.3726 -3.5145 -0.4873 28 1 -0.4850 0.8400 0.0041 29 1 3.8612 -0.3664 -0.1456 30 1 3.9870 -3.0378 0.6832 31 1 3.6876 -3.0532 -1.0713 32 1 6.4433 -0.4150 0.2692 33 1 6.3340 -1.8657 4.6996 34 1 4.9390 -1.8568 -2.5530 35 1 5.8558 -0.4964 -1.8328 36 1 7.9506 -1.6803 -1.9917 37 1 7.1268 -2.1891 -3.5027 38 1 8.0139 -4.0833 -1.8014 39 1 6.3882 -4.2654 -2.5320 40 1 7.1473 -3.4774 0.2786 41 1 5.7014 -4.3525 -0.2992 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753505220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:27 Heat of formation + Delta-G solvation = -140.020976 kcal Electronic energy + Delta-G solvation = -31664.657636 eV Core-core repulsion = 26746.216162 eV Total energy + Delta-G solvation = -4918.441475 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.74468 -48.27735 -48.23034 -44.05974 -40.25386 -37.76966 -35.52068 -34.50640 -33.29722 -31.83783 -31.21843 -28.81082 -28.49146 -27.20594 -24.99615 -24.24979 -22.62130 -21.91146 -21.27313 -20.68252 -19.35517 -19.21750 -19.19714 -18.87378 -17.69902 -17.57250 -17.21773 -16.73191 -16.09097 -15.19983 -15.05996 -15.00651 -14.70857 -14.62318 -14.47237 -14.39203 -14.34512 -14.33568 -14.29941 -13.87481 -13.34145 -13.29737 -13.03041 -12.70403 -12.15832 -12.08239 -11.81921 -11.51805 -11.43754 -11.07960 -11.03232 -10.92341 -10.78115 -10.62262 -10.45838 -10.15169 -9.97662 -9.78133 -9.60958 -8.85460 -8.80149 -7.17786 -5.75223 -3.08966 0.49910 1.13036 1.33854 2.24222 2.78320 3.05002 3.26469 3.36649 3.40308 3.45273 3.63608 3.69887 4.18608 4.37028 4.57621 4.60459 4.71478 4.76215 4.95048 5.05421 5.30364 5.35721 5.46300 5.56582 5.57505 5.69084 5.71882 5.84425 5.88437 5.97536 6.12480 6.23881 6.35872 6.40170 6.44428 6.62379 6.77420 6.89496 7.59444 8.03211 8.22047 8.44038 9.23991 9.96438 10.17294 11.43326 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.008557 B = 0.004531 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.229989 B = 6178.517211 C = 7963.227211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.878 3.122 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.238 4.238 8 H 0.089 0.911 9 N -0.751 5.751 10 C 0.151 3.849 11 C 0.163 3.837 12 N -0.694 5.694 13 C 0.609 3.391 14 O -0.520 6.520 15 C -0.060 4.060 16 C 0.054 3.946 17 O -0.168 6.168 18 C 0.089 3.911 19 C 0.588 3.412 20 F -0.151 7.151 21 F -0.157 7.157 22 F -0.142 7.142 23 N -0.388 5.388 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.116 4.116 28 H 0.258 0.742 29 H 0.359 0.641 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.404 0.596 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.545 -0.063 5.409 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.708 3.292 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.107 0.893 9 N -0.397 5.397 10 C 0.023 3.977 11 C 0.078 3.922 12 N -0.345 5.345 13 C 0.392 3.608 14 O -0.396 6.396 15 C -0.183 4.183 16 C -0.020 4.020 17 O -0.052 6.052 18 C -0.121 4.121 19 C 0.532 3.468 20 F -0.132 7.132 21 F -0.138 7.138 22 F -0.123 7.123 23 N -0.120 5.120 24 C -0.159 4.159 25 C -0.163 4.163 26 C -0.162 4.162 27 C -0.155 4.155 28 H 0.068 0.932 29 H 0.192 0.808 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.239 0.761 33 H 0.264 0.736 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 21.112 -0.577 5.082 21.723 hybrid contribution 0.517 1.638 0.682 1.848 sum 21.629 1.061 5.765 22.409 Atomic orbital electron populations 1.69713 1.05051 1.25662 1.57739 1.24629 0.95145 0.97006 1.02273 0.86609 0.79401 0.85392 0.77755 1.21085 1.21772 1.20362 1.19047 0.81060 0.94780 1.41940 0.89284 1.42606 1.04656 1.02136 1.90290 1.21124 0.87088 0.89759 0.99737 1.21458 0.94807 0.89284 0.86659 1.45912 1.62490 1.20372 1.05689 1.16420 0.77606 0.85151 0.81581 1.90833 1.48063 1.19000 1.81678 1.22189 1.09113 0.91930 0.95070 1.25753 0.94574 0.89003 0.92685 1.84387 1.62958 1.19973 1.37834 1.25395 1.09279 0.94252 0.83173 1.15952 0.75714 0.80153 0.74988 1.93346 1.53707 1.71411 1.94728 1.93297 1.72588 1.96509 1.51411 1.93321 1.77304 1.89949 1.51747 1.70649 1.09704 1.07143 1.24489 1.22645 0.98443 1.00169 0.94655 1.22532 0.97423 0.95978 1.00325 1.22392 1.00389 0.96839 0.96602 1.22413 0.99380 0.96772 0.96908 0.93161 0.80850 0.94097 0.94153 0.76068 0.73572 0.89061 0.91192 0.91769 0.91411 0.91920 0.91347 0.91244 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.74 13.97 55.49 0.78 -28.97 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 22.58 27.77 -169.99 -4.72 17.86 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.28 -6.80 6.49 56.52 0.37 -6.43 16 7 C -0.24 -6.86 10.47 -15.06 -0.16 -7.02 16 8 H 0.09 2.76 8.06 -52.48 -0.42 2.33 16 9 N -0.75 -17.99 5.10 -59.91 -0.31 -18.29 16 10 C 0.15 3.01 4.59 -4.04 -0.02 2.99 16 11 C 0.16 2.52 0.58 -130.70 -0.08 2.44 16 12 N -0.69 -10.70 4.40 -47.63 -0.21 -10.91 16 13 C 0.61 9.80 6.97 -12.52 -0.09 9.71 16 14 O -0.52 -9.22 14.11 5.27 0.07 -9.14 16 15 C -0.06 -0.86 6.99 -83.02 -0.58 -1.44 16 16 C 0.05 0.60 11.94 29.96 0.36 0.95 16 17 O -0.17 -1.88 10.70 6.54 0.07 -1.81 16 18 C 0.09 1.09 7.53 -13.08 -0.10 1.00 16 19 C 0.59 6.22 3.57 36.00 0.13 6.35 16 20 F -0.15 -1.72 17.30 2.25 0.04 -1.68 16 21 F -0.16 -1.47 17.28 2.25 0.04 -1.43 16 22 F -0.14 -1.51 17.23 2.25 0.04 -1.47 16 23 N -0.39 -5.51 10.97 -7.66 -0.08 -5.59 16 24 C -0.12 -1.65 5.82 -25.07 -0.15 -1.79 16 25 C -0.13 -1.34 6.91 -24.74 -0.17 -1.51 16 26 C -0.12 -1.34 6.83 -25.08 -0.17 -1.51 16 27 C -0.12 -1.55 5.17 -25.61 -0.13 -1.68 16 28 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 29 H 0.36 8.42 5.04 -40.82 -0.21 8.21 16 30 H 0.04 0.90 6.75 -51.93 -0.35 0.55 16 31 H 0.04 0.81 8.00 -51.93 -0.42 0.39 16 32 H 0.40 5.80 7.97 -40.82 -0.33 5.47 16 33 H 0.25 1.80 8.06 -52.48 -0.42 1.38 16 34 H 0.09 1.33 7.75 -51.93 -0.40 0.92 16 35 H 0.07 0.95 7.71 -51.93 -0.40 0.54 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 40 H 0.07 0.96 6.96 -51.93 -0.36 0.59 16 41 H 0.08 1.08 7.67 -51.93 -0.40 0.68 16 LS Contribution 357.25 15.07 5.38 5.38 Total: -1.00 -33.75 357.25 -4.71 -38.46 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -4.57 Total: 9.05 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -1.25 Total: 8.54 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: 0.18 Total: -63.76 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.14 Total: -10.95 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.12 Total: -4.59 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.72 Total: 17.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.75 -4.71 -38.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753505220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.557 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds