Wall clock time and date at job start Wed Apr 1 2020 04:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 119.99878 * 2 1 4 4 H 1.48498 * 109.47422 * 274.45831 * 3 2 1 5 5 H 1.48506 * 109.47314 * 34.45505 * 3 2 1 6 6 H 1.48504 * 109.47294 * 154.45435 * 3 2 1 7 7 C 1.38817 * 119.99968 * 180.27594 * 2 1 3 8 8 H 1.08004 * 119.99787 * 353.93040 * 7 2 1 9 9 N 1.36933 * 119.99965 * 173.93352 * 7 2 1 10 10 C 1.46494 * 119.99906 * 184.81078 * 9 7 2 11 11 C 1.53007 * 109.46881 * 174.88193 * 10 9 7 12 12 N 1.46490 * 110.01695 * 53.31821 * 11 10 9 13 13 C 1.34782 * 120.00286 * 62.41523 * 12 11 10 14 14 O 1.21610 * 119.99817 * 5.02512 * 13 12 11 15 15 C 1.47421 * 120.00074 * 185.02259 * 13 12 11 16 16 C 1.36089 * 126.44968 * 179.97438 * 15 13 12 17 17 O 1.34248 * 106.94988 * 179.97438 * 16 15 13 18 18 C 1.34048 * 108.23009 * 359.97438 * 17 16 15 19 19 C 1.50696 * 125.38019 * 179.97438 * 18 17 16 20 20 F 1.39902 * 109.47350 * 270.03066 * 19 18 17 21 21 F 1.39903 * 109.47351 * 30.02914 * 19 18 17 22 22 F 1.39900 * 109.47554 * 150.02873 * 19 18 17 23 23 N 1.29937 * 109.24216 * 359.74651 * 18 17 16 24 24 C 1.54265 * 110.03391 * 291.87366 * 11 10 9 25 25 C 1.54894 * 104.19649 * 217.10835 * 24 11 10 26 26 C 1.54884 * 102.74744 * 37.94051 * 25 24 11 27 27 C 1.53879 * 110.03201 * 174.70865 * 11 10 9 28 28 H 0.96995 * 120.00328 * 359.72303 * 1 2 3 29 29 H 0.96999 * 119.99893 * 4.81375 * 9 7 2 30 30 H 1.08991 * 109.47470 * 294.88235 * 10 9 7 31 31 H 1.09001 * 109.47025 * 54.88709 * 10 9 7 32 32 H 0.97006 * 120.00305 * 242.41964 * 12 11 10 33 33 H 1.08005 * 126.52068 * 0.02562 * 16 15 13 34 34 H 1.09005 * 110.48420 * 335.78243 * 24 11 10 35 35 H 1.08996 * 110.48839 * 98.42592 * 24 11 10 36 36 H 1.08993 * 110.75266 * 279.62591 * 25 24 11 37 37 H 1.09004 * 110.75273 * 156.25553 * 25 24 11 38 38 H 1.09000 * 110.48564 * 203.37862 * 26 25 24 39 39 H 1.09007 * 110.48872 * 80.74132 * 26 25 24 40 40 H 1.08996 * 110.03201 * 238.57062 * 27 11 10 41 41 H 1.09001 * 110.03233 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4034 2.1008 -1.3958 5 1 1.4978 2.6237 0.7921 6 1 3.5916 1.4148 0.6038 7 6 2.0103 -1.2022 -0.0058 8 1 1.4748 -2.1353 0.0886 9 7 3.3739 -1.2049 -0.1311 10 6 4.0966 -2.4742 -0.2433 11 6 5.5793 -2.1960 -0.4988 12 7 6.1023 -1.2868 0.5238 13 6 6.1097 -1.6612 1.8186 14 8 5.7679 -2.7866 2.1279 15 6 6.5320 -0.7067 2.8596 16 6 6.5890 -0.9435 4.1985 17 8 7.0236 0.1869 4.7777 18 6 7.2298 1.0982 3.8165 19 6 7.7200 2.5057 4.0392 20 9 6.6257 3.3553 4.2341 21 9 8.5436 2.5394 5.1695 22 9 8.4457 2.9293 2.9207 23 7 6.9448 0.5747 2.6619 24 6 5.7676 -1.5806 -1.9008 25 6 7.0910 -2.2011 -2.4133 26 6 7.0152 -3.6543 -1.8827 27 6 6.3726 -3.5145 -0.4873 28 1 -0.4850 0.8400 0.0041 29 1 3.8612 -0.3664 -0.1456 30 1 3.9870 -3.0378 0.6832 31 1 3.6876 -3.0532 -1.0713 32 1 6.4433 -0.4150 0.2692 33 1 6.3340 -1.8657 4.6996 34 1 4.9390 -1.8568 -2.5530 35 1 5.8558 -0.4964 -1.8328 36 1 7.9506 -1.6803 -1.9917 37 1 7.1268 -2.1891 -3.5027 38 1 8.0139 -4.0833 -1.8014 39 1 6.3882 -4.2654 -2.5320 40 1 7.1473 -3.4774 0.2786 41 1 5.7014 -4.3525 -0.2992 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753505220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:26 Heat of formation + Delta-G solvation = -165.658186 kcal Electronic energy + Delta-G solvation = -31665.769349 eV Core-core repulsion = 26746.216162 eV Total energy + Delta-G solvation = -4919.553187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.57143 -49.08341 -49.07224 -45.00692 -41.48147 -38.95769 -36.52091 -36.34141 -34.59523 -33.39025 -32.71505 -30.10321 -29.69619 -28.12096 -26.54422 -25.44689 -23.78265 -23.51931 -22.35053 -21.67150 -20.66271 -20.26391 -20.05401 -19.75137 -19.59020 -18.67145 -18.15242 -17.65784 -17.35981 -16.52723 -16.48289 -15.88911 -15.86095 -15.76573 -15.61972 -15.52242 -15.44430 -15.16895 -15.15733 -15.11980 -14.91022 -14.65651 -14.19952 -14.11476 -13.77495 -13.67516 -13.03382 -12.92792 -12.68347 -12.50796 -12.32740 -12.19668 -11.97821 -11.94720 -11.87521 -11.78218 -11.40816 -11.27885 -10.95097 -10.76193 -10.10207 -9.30418 -8.06800 -5.38568 -0.41481 0.24915 0.28916 1.30376 1.33535 1.34495 1.40528 1.83576 1.99117 2.10815 2.42382 2.80782 2.85799 3.15469 3.23806 3.37361 3.43522 3.65111 3.79330 3.83291 3.94824 4.20102 4.30110 4.37256 4.47597 4.54945 4.65242 4.78519 4.82157 4.89135 5.04127 5.10797 5.15703 5.24843 5.31979 5.49029 5.55707 5.70321 5.73860 6.16768 6.40167 7.01907 7.04003 7.79657 8.01153 9.14975 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.008557 B = 0.004531 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.229989 B = 6178.517211 C = 7963.227211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.058 4.058 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.296 1.296 6 H -0.259 1.259 7 C -0.231 4.231 8 H 0.053 0.947 9 N -0.747 5.747 10 C 0.151 3.849 11 C 0.167 3.833 12 N -0.694 5.694 13 C 0.604 3.396 14 O -0.545 6.545 15 C -0.097 4.097 16 C 0.083 3.917 17 O -0.161 6.161 18 C 0.087 3.913 19 C 0.597 3.403 20 F -0.155 7.155 21 F -0.147 7.147 22 F -0.142 7.142 23 N -0.406 5.406 24 C -0.123 4.123 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.110 4.110 28 H 0.258 0.742 29 H 0.364 0.636 30 H 0.018 0.982 31 H 0.038 0.962 32 H 0.410 0.590 33 H 0.282 0.718 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.336 0.770 5.353 24.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.250 4.250 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.223 1.223 6 H -0.184 1.184 7 C -0.362 4.362 8 H 0.071 0.929 9 N -0.393 5.393 10 C 0.024 3.976 11 C 0.081 3.919 12 N -0.344 5.344 13 C 0.390 3.610 14 O -0.423 6.423 15 C -0.219 4.219 16 C 0.009 3.991 17 O -0.044 6.044 18 C -0.124 4.124 19 C 0.541 3.459 20 F -0.136 7.136 21 F -0.128 7.128 22 F -0.123 7.123 23 N -0.138 5.138 24 C -0.161 4.161 25 C -0.151 4.151 26 C -0.156 4.156 27 C -0.149 4.149 28 H 0.067 0.933 29 H 0.197 0.803 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.246 0.754 33 H 0.297 0.703 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 23.959 0.249 5.010 24.479 hybrid contribution -0.398 1.264 0.772 1.533 sum 23.561 1.512 5.783 24.307 Atomic orbital electron populations 1.69887 1.07006 1.26590 1.59634 1.25403 0.95988 1.00840 1.02722 0.85495 0.78549 0.80170 0.78279 1.19742 1.22289 1.18437 1.19000 0.83122 0.93464 1.40630 0.92913 1.42518 1.03016 1.03832 1.89929 1.21207 0.90234 0.87809 0.98397 1.21395 0.91710 0.90879 0.87867 1.45919 1.62233 1.20598 1.05659 1.16702 0.77063 0.85225 0.82057 1.90814 1.49258 1.20093 1.82113 1.22050 1.11869 0.92157 0.95786 1.26402 0.91507 0.89438 0.91778 1.84431 1.62663 1.19859 1.37402 1.25662 1.08908 0.94869 0.82954 1.15759 0.75609 0.79326 0.75212 1.93338 1.54076 1.71433 1.94773 1.93319 1.72231 1.96398 1.50888 1.93323 1.77236 1.89846 1.51848 1.70566 1.10368 1.07338 1.25519 1.22653 0.99914 1.00411 0.93079 1.22496 0.95818 0.95342 1.01437 1.22386 1.01269 0.97307 0.94606 1.22345 0.98799 0.94977 0.98815 0.93321 0.80258 0.96356 0.94399 0.75397 0.70283 0.90263 0.90961 0.90650 0.89555 0.89923 0.90838 0.91495 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.96 13.97 21.65 0.30 -63.66 16 2 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 3 Si 0.95 46.67 27.77 68.60 1.90 48.58 16 4 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 6 H -0.26 -11.84 6.49 99.48 0.65 -11.19 16 7 C -0.23 -13.62 10.47 84.04 0.88 -12.74 16 8 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 9 N -0.75 -35.93 5.10 -343.46 -1.75 -37.68 16 10 C 0.15 6.10 4.59 86.38 0.40 6.50 16 11 C 0.17 5.02 0.58 4.33 0.00 5.02 16 12 N -0.69 -20.65 4.40 -422.86 -1.86 -22.51 16 13 C 0.60 19.01 6.97 86.66 0.60 19.61 16 14 O -0.54 -19.23 14.11 -4.06 -0.06 -19.29 16 15 C -0.10 -2.61 6.99 40.41 0.28 -2.33 16 16 C 0.08 1.65 11.94 67.32 0.80 2.45 16 17 O -0.16 -3.21 10.70 0.49 0.01 -3.20 16 18 C 0.09 1.96 7.53 88.39 0.67 2.63 16 19 C 0.60 11.48 3.57 71.23 0.25 11.73 16 20 F -0.16 -3.26 17.30 44.97 0.78 -2.48 16 21 F -0.15 -2.45 17.28 44.97 0.78 -1.67 16 22 F -0.14 -2.75 17.23 44.97 0.77 -1.98 16 23 N -0.41 -10.87 10.97 -293.04 -3.21 -14.08 16 24 C -0.12 -3.11 5.82 31.67 0.18 -2.93 16 25 C -0.11 -2.07 6.91 31.88 0.22 -1.85 16 26 C -0.12 -2.23 6.83 31.67 0.22 -2.02 16 27 C -0.11 -2.84 5.17 31.32 0.16 -2.67 16 28 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 29 H 0.36 16.71 5.04 -92.71 -0.47 16.24 16 30 H 0.02 0.84 6.75 -2.39 -0.02 0.82 16 31 H 0.04 1.55 8.00 -2.39 -0.02 1.53 16 32 H 0.41 11.14 7.97 -92.70 -0.74 10.40 16 33 H 0.28 3.29 8.06 -2.91 -0.02 3.27 16 34 H 0.08 2.21 7.75 -2.38 -0.02 2.19 16 35 H 0.07 1.80 7.71 -2.39 -0.02 1.78 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.07 1.76 6.96 -2.39 -0.02 1.74 16 41 H 0.06 1.78 7.67 -2.39 -0.02 1.77 16 Total: -1.00 -74.16 357.25 2.65 -71.51 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -0.15 Total: 26.10 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 5.14 Total: 20.38 kcal Atomic # 7 Polarization: -131.42 SS G_CDS: -6.52 Total: -137.94 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.05 Total: -22.50 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 2.33 Total: -6.13 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.90 Total: 48.58 kcal Total: -74.16 2.65 -71.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753505220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.152 kcal (2) G-P(sol) polarization free energy of solvation -74.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds