Wall clock time and date at job start Wed Apr 1 2020 06:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47174 * 2 1 4 4 C 1.50693 * 109.47099 * 119.99999 * 2 1 3 5 5 H 1.08002 * 119.99984 * 119.99638 * 4 2 1 6 6 C 1.37880 * 120.00122 * 300.00203 * 4 2 1 7 7 N 1.31518 * 119.99676 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00190 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46952 * 59.99884 * 8 6 4 10 10 H 1.48500 * 109.47164 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46953 * 300.00049 * 8 6 4 12 12 N 1.46499 * 109.47022 * 239.99844 * 2 1 3 13 13 C 1.46496 * 120.00333 * 300.00522 * 12 2 1 14 14 C 1.34778 * 119.99735 * 119.99882 * 12 2 1 15 15 O 1.21276 * 120.00466 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99841 * 179.97438 * 14 12 2 17 17 H 1.08993 * 110.86073 * 58.80150 * 16 14 12 18 18 C 1.54737 * 110.97380 * 295.00369 * 16 14 12 19 19 C 1.51695 * 102.55210 * 217.62993 * 18 16 14 20 20 C 1.47650 * 125.86532 * 195.39637 * 19 18 16 21 21 C 1.39628 * 120.14689 * 354.46556 * 20 19 18 22 22 C 1.37931 * 119.84726 * 180.25433 * 21 20 19 23 23 C 1.38383 * 120.14836 * 359.79607 * 22 21 20 24 24 C 1.38341 * 120.30089 * 359.97286 * 23 22 21 25 25 C 1.37972 * 120.14627 * 0.02562 * 24 23 22 26 26 N 1.48018 * 120.07301 * 179.97438 * 25 24 23 27 27 O 1.21803 * 119.99678 * 132.44279 * 26 25 24 28 28 O 1.21798 * 120.00454 * 312.17124 * 26 25 24 29 29 N 1.29079 * 108.26741 * 15.64901 * 19 18 16 30 30 O 1.41390 * 112.87518 * 359.89096 * 29 19 18 31 31 H 1.08994 * 109.47297 * 300.00682 * 1 2 3 32 32 H 1.09011 * 109.47019 * 59.99974 * 1 2 3 33 33 H 1.08991 * 109.47520 * 179.97438 * 1 2 3 34 34 H 0.97001 * 119.99542 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.46752 * 269.99820 * 13 12 2 36 36 H 1.09000 * 109.47249 * 29.99544 * 13 12 2 37 37 H 1.08995 * 109.47913 * 150.00067 * 13 12 2 38 38 H 1.08996 * 110.79556 * 99.35812 * 18 16 14 39 39 H 1.08999 * 110.95909 * 335.96275 * 18 16 14 40 40 H 1.08002 * 120.07888 * 0.03217 * 21 20 19 41 41 H 1.08003 * 119.92855 * 179.77032 * 22 21 20 42 42 H 1.07999 * 119.84959 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.92422 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3213 -1.1203 4.0079 9 1 3.8063 -1.1209 4.0082 10 1 1.8268 -0.4199 5.2204 11 1 1.8257 -2.5203 4.0077 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1253 -1.8913 16 6 3.2960 -0.7462 -3.3135 17 1 2.4655 -1.1178 -3.9138 18 6 4.2621 -1.8938 -2.9342 19 6 5.3044 -1.8244 -4.0342 20 6 6.2888 -2.8753 -4.3607 21 6 6.3924 -4.0130 -3.5579 22 6 7.3178 -4.9884 -3.8656 23 6 8.1395 -4.8434 -4.9695 24 6 8.0389 -3.7209 -5.7719 25 6 7.1175 -2.7377 -5.4755 26 7 7.0116 -1.5371 -6.3348 27 8 5.9192 -1.1539 -6.7137 28 8 8.0162 -0.9296 -6.6590 29 7 5.1863 -0.6867 -4.6323 30 8 4.1525 0.1130 -4.0930 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 0.7095 1.1618 3.4844 35 1 2.4157 -2.7377 -0.9717 36 1 0.6904 -2.3002 -0.9847 37 1 1.6237 -2.2853 -2.5002 38 1 3.7470 -2.8542 -2.9492 39 1 4.7161 -1.7152 -1.9595 40 1 5.7518 -4.1273 -2.6958 41 1 7.4015 -5.8672 -3.2433 42 1 8.8627 -5.6099 -5.2057 43 1 8.6830 -3.6142 -6.6322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183021892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:45:00 Heat of formation + Delta-G solvation = 42.581327 kcal Electronic energy + Delta-G solvation = -30602.694389 eV Core-core repulsion = 26234.027885 eV Total energy + Delta-G solvation = -4368.666504 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.30744 -40.77054 -39.71176 -38.53863 -36.53973 -35.52803 -34.12142 -33.15944 -32.51517 -31.19498 -30.99668 -29.10988 -26.88279 -26.44316 -25.34499 -24.65810 -24.29907 -22.65575 -21.28084 -20.68419 -19.34053 -18.76620 -18.66656 -17.71009 -17.50863 -17.01596 -16.30785 -16.04903 -15.94714 -15.61091 -15.46577 -15.12834 -14.67941 -14.49200 -14.15853 -13.73995 -13.50898 -13.19306 -12.88635 -12.79876 -12.71395 -12.49983 -12.26454 -12.02178 -11.69630 -11.65445 -11.60768 -11.30805 -11.18282 -11.15178 -10.91678 -10.80749 -10.66656 -10.54045 -10.34889 -10.25842 -10.11624 -9.37808 -9.27453 -8.96476 -8.51635 -7.78612 -6.15855 -4.25020 -0.45623 0.13940 0.83855 1.19036 1.67620 2.54897 2.79302 3.01025 3.20269 3.26944 3.27235 3.34527 3.59533 3.92786 4.09738 4.15893 4.28095 4.30537 4.35599 4.42501 4.53482 4.69298 4.88509 4.93236 5.06986 5.15542 5.20103 5.25151 5.38368 5.44852 5.52465 5.56647 5.73967 5.83494 6.08831 6.25066 6.66016 6.71914 6.93334 6.99669 7.27880 7.38165 7.53832 7.60198 7.90447 8.07130 8.32609 8.68469 8.84536 9.41500 10.89538 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.002850 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.294560 B = 9821.490105 C =10941.444420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.065 0.935 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.586 5.586 13 C 0.080 3.920 14 C 0.509 3.491 15 O -0.522 6.522 16 C 0.027 3.973 17 H 0.113 0.887 18 C -0.128 4.128 19 C 0.072 3.928 20 C 0.029 3.971 21 C -0.083 4.083 22 C -0.076 4.076 23 C -0.100 4.100 24 C -0.065 4.065 25 C -0.011 4.011 26 N 0.015 4.985 27 O -0.095 6.095 28 O -0.165 6.165 29 N -0.236 5.236 30 O -0.145 6.145 31 H 0.095 0.905 32 H 0.013 0.987 33 H 0.031 0.969 34 H 0.265 0.735 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.325 -18.419 -13.680 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.160 3.840 3 H 0.083 0.917 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.319 5.319 13 C -0.064 4.064 14 C 0.292 3.708 15 O -0.398 6.398 16 C -0.036 4.036 17 H 0.130 0.870 18 C -0.167 4.167 19 C -0.118 4.118 20 C 0.026 3.974 21 C -0.103 4.103 22 C -0.094 4.094 23 C -0.119 4.119 24 C -0.084 4.084 25 C -0.094 4.094 26 N 0.542 4.458 27 O -0.325 6.325 28 O -0.377 6.377 29 N 0.027 4.973 30 O -0.167 6.167 31 H 0.114 0.886 32 H 0.032 0.968 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.173 0.827 41 H 0.168 0.832 42 H 0.168 0.832 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.839 -17.330 -13.789 24.657 hybrid contribution -0.195 -0.786 1.301 1.533 sum 10.644 -18.117 -12.488 24.443 Atomic orbital electron populations 1.22109 0.97943 0.99470 1.01118 1.19015 0.91033 0.94570 0.79417 0.91748 1.21220 1.32271 1.13121 0.90185 0.92324 1.24898 0.94879 0.94952 0.98992 1.69865 1.36009 1.22395 1.24047 0.86538 0.79197 0.79530 0.82004 1.20269 1.21083 1.20200 1.48215 1.48592 1.11707 1.23353 1.21702 1.02278 0.83189 0.99185 1.19692 0.80334 0.87294 0.83470 1.90730 1.57114 1.16408 1.75588 1.23686 0.95232 0.90376 0.94269 0.86950 1.22939 0.93489 1.01017 0.99299 1.24053 0.97469 0.94508 0.95761 1.17512 0.92684 0.93605 0.93559 1.21400 0.98896 0.90965 0.99058 1.21527 0.93081 0.98744 0.96088 1.21360 0.99481 0.96904 0.94150 1.20906 0.94852 0.91923 1.00728 1.21173 1.02908 0.89713 0.95581 1.43397 1.00787 1.01359 1.00226 1.94619 1.14467 1.69234 1.54214 1.94549 1.27345 1.55365 1.60409 1.78762 1.03837 1.02401 1.12283 1.91444 1.34220 1.26253 1.64801 0.88616 0.96782 0.94985 0.92473 0.92964 0.90214 0.93085 0.86800 0.86761 0.82668 0.83183 0.83188 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.95 37.16 0.33 -3.06 16 2 C 0.26 6.36 2.64 -69.08 -0.18 6.18 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -13.62 8.37 -34.44 -0.29 -13.91 16 5 H 0.06 1.45 7.65 -52.49 -0.40 1.05 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.44 11.32 55.43 0.63 -23.82 16 8 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 N -0.59 -11.68 2.75 -175.27 -0.48 -12.17 16 13 C 0.08 1.16 8.34 59.84 0.50 1.65 16 14 C 0.51 10.50 7.06 -10.98 -0.08 10.43 16 15 O -0.52 -13.49 15.92 -13.27 -0.21 -13.70 16 16 C 0.03 0.43 3.24 -26.97 -0.09 0.34 16 17 H 0.11 1.48 7.38 -51.93 -0.38 1.09 16 18 C -0.13 -1.55 4.62 -26.48 -0.12 -1.67 16 19 C 0.07 0.95 6.94 -79.42 -0.55 0.40 16 20 C 0.03 0.29 5.87 -105.03 -0.62 -0.32 16 21 C -0.08 -0.51 9.61 -39.18 -0.38 -0.88 16 22 C -0.08 -0.29 10.03 -39.64 -0.40 -0.69 16 23 C -0.10 -0.40 10.04 -39.49 -0.40 -0.80 16 24 C -0.07 -0.46 9.78 -39.64 -0.39 -0.84 16 25 C -0.01 -0.12 6.36 -79.54 -0.51 -0.62 16 26 N 0.01 0.22 3.81 34.16 0.13 0.35 16 27 O -0.10 -1.56 15.75 -29.46 -0.46 -2.02 16 28 O -0.17 -2.53 19.11 -29.46 -0.56 -3.09 16 29 N -0.24 -4.05 8.64 35.30 0.31 -3.75 16 30 O -0.14 -2.81 11.82 -30.20 -0.36 -3.17 16 31 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 32 H 0.01 0.29 8.14 -51.92 -0.42 -0.13 16 33 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 34 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.05 0.67 8.05 -51.93 -0.42 0.26 16 36 H 0.08 1.18 6.43 -51.93 -0.33 0.85 16 37 H 0.05 0.55 6.07 -51.93 -0.31 0.23 16 38 H 0.11 0.90 7.42 -51.93 -0.39 0.51 16 39 H 0.11 1.48 7.91 -51.93 -0.41 1.07 16 40 H 0.16 0.63 7.52 -52.49 -0.39 0.24 16 41 H 0.15 0.11 8.06 -52.48 -0.42 -0.31 16 42 H 0.15 0.13 8.06 -52.49 -0.42 -0.29 16 43 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -36.06 365.79 -8.66 -44.73 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.89 Total: -1.91 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -3.25 Total: -2.16 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.58 Total: -39.39 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -1.60 Total: -21.98 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.06 -8.66 -44.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183021892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.307 kcal (2) G-P(sol) polarization free energy of solvation -36.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds