Wall clock time and date at job start Wed Apr 1 2020 06:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47174 * 2 1 4 4 C 1.50693 * 109.47099 * 119.99999 * 2 1 3 5 5 H 1.08002 * 119.99984 * 119.99638 * 4 2 1 6 6 C 1.37880 * 120.00122 * 300.00203 * 4 2 1 7 7 N 1.31518 * 119.99676 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00190 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46952 * 59.99884 * 8 6 4 10 10 H 1.48500 * 109.47164 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46953 * 300.00049 * 8 6 4 12 12 N 1.46499 * 109.47022 * 239.99844 * 2 1 3 13 13 C 1.46496 * 120.00333 * 300.00522 * 12 2 1 14 14 C 1.34778 * 119.99735 * 119.99882 * 12 2 1 15 15 O 1.21276 * 120.00466 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99841 * 179.97438 * 14 12 2 17 17 H 1.08993 * 110.86073 * 58.80150 * 16 14 12 18 18 C 1.54737 * 110.97380 * 295.00369 * 16 14 12 19 19 C 1.51695 * 102.55210 * 217.62993 * 18 16 14 20 20 C 1.47650 * 125.86532 * 195.39637 * 19 18 16 21 21 C 1.39628 * 120.14689 * 354.46556 * 20 19 18 22 22 C 1.37931 * 119.84726 * 180.25433 * 21 20 19 23 23 C 1.38383 * 120.14836 * 359.79607 * 22 21 20 24 24 C 1.38341 * 120.30089 * 359.97286 * 23 22 21 25 25 C 1.37972 * 120.14627 * 0.02562 * 24 23 22 26 26 N 1.48018 * 120.07301 * 179.97438 * 25 24 23 27 27 O 1.21803 * 119.99678 * 132.44279 * 26 25 24 28 28 O 1.21798 * 120.00454 * 312.17124 * 26 25 24 29 29 N 1.29079 * 108.26741 * 15.64901 * 19 18 16 30 30 O 1.41390 * 112.87518 * 359.89096 * 29 19 18 31 31 H 1.08994 * 109.47297 * 300.00682 * 1 2 3 32 32 H 1.09011 * 109.47019 * 59.99974 * 1 2 3 33 33 H 1.08991 * 109.47520 * 179.97438 * 1 2 3 34 34 H 0.97001 * 119.99542 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.46752 * 269.99820 * 13 12 2 36 36 H 1.09000 * 109.47249 * 29.99544 * 13 12 2 37 37 H 1.08995 * 109.47913 * 150.00067 * 13 12 2 38 38 H 1.08996 * 110.79556 * 99.35812 * 18 16 14 39 39 H 1.08999 * 110.95909 * 335.96275 * 18 16 14 40 40 H 1.08002 * 120.07888 * 0.03217 * 21 20 19 41 41 H 1.08003 * 119.92855 * 179.77032 * 22 21 20 42 42 H 1.07999 * 119.84959 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.92422 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3213 -1.1203 4.0079 9 1 3.8063 -1.1209 4.0082 10 1 1.8268 -0.4199 5.2204 11 1 1.8257 -2.5203 4.0077 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1253 -1.8913 16 6 3.2960 -0.7462 -3.3135 17 1 2.4655 -1.1178 -3.9138 18 6 4.2621 -1.8938 -2.9342 19 6 5.3044 -1.8244 -4.0342 20 6 6.2888 -2.8753 -4.3607 21 6 6.3924 -4.0130 -3.5579 22 6 7.3178 -4.9884 -3.8656 23 6 8.1395 -4.8434 -4.9695 24 6 8.0389 -3.7209 -5.7719 25 6 7.1175 -2.7377 -5.4755 26 7 7.0116 -1.5371 -6.3348 27 8 5.9192 -1.1539 -6.7137 28 8 8.0162 -0.9296 -6.6590 29 7 5.1863 -0.6867 -4.6323 30 8 4.1525 0.1130 -4.0930 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 0.7095 1.1618 3.4844 35 1 2.4157 -2.7377 -0.9717 36 1 0.6904 -2.3002 -0.9847 37 1 1.6237 -2.2853 -2.5002 38 1 3.7470 -2.8542 -2.9492 39 1 4.7161 -1.7152 -1.9595 40 1 5.7518 -4.1273 -2.6958 41 1 7.4015 -5.8672 -3.2433 42 1 8.8627 -5.6099 -5.2057 43 1 8.6830 -3.6142 -6.6322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183021892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:59 Heat of formation + Delta-G solvation = 19.129890 kcal Electronic energy + Delta-G solvation = -30603.711319 eV Core-core repulsion = 26234.027885 eV Total energy + Delta-G solvation = -4369.683435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.25916 -41.95926 -40.54138 -39.85394 -37.60774 -37.26186 -35.07622 -34.94936 -33.17939 -32.58287 -31.74249 -30.71441 -27.79107 -27.71376 -27.31290 -25.94170 -24.92317 -23.46493 -22.82227 -21.60760 -20.44102 -19.99998 -19.70785 -18.82851 -18.59147 -18.34551 -17.88360 -17.37585 -16.89182 -16.83848 -16.35181 -16.05527 -16.00476 -15.60077 -15.20495 -14.82111 -14.58846 -14.42831 -14.29325 -14.06262 -13.75570 -13.48909 -13.35407 -13.20874 -13.01265 -12.90724 -12.78471 -12.73829 -12.70941 -12.61223 -12.36900 -12.18387 -12.17503 -12.13500 -11.73298 -11.49308 -11.21057 -10.71921 -10.60345 -10.50634 -10.01855 -9.44591 -8.14502 -6.31963 -1.25631 -0.45525 -0.00177 0.37509 0.85888 1.37816 1.42320 1.46125 1.51034 1.54864 2.20296 2.30695 2.42406 2.55878 3.06402 3.14332 3.19102 3.35094 3.51228 3.64724 3.75939 3.90298 3.96158 4.05178 4.21412 4.33364 4.41685 4.47399 4.58305 4.68145 4.75799 4.78319 4.87133 5.01581 5.01864 5.05131 5.10143 5.16528 5.43253 5.49799 5.55422 5.63501 5.93175 6.01836 6.12662 6.38924 6.65291 6.75502 7.18066 7.41047 8.90255 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.002850 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.294560 B = 9821.490105 C =10941.444420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.261 3.739 3 H 0.002 0.998 4 C -0.536 4.536 5 H 0.072 0.928 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.968 3.032 9 H -0.277 1.277 10 H -0.290 1.290 11 H -0.255 1.255 12 N -0.584 5.584 13 C 0.069 3.931 14 C 0.500 3.500 15 O -0.594 6.594 16 C 0.031 3.969 17 H 0.144 0.856 18 C -0.118 4.118 19 C 0.099 3.901 20 C -0.008 4.008 21 C -0.067 4.067 22 C -0.057 4.057 23 C -0.075 4.075 24 C -0.070 4.070 25 C -0.038 4.038 26 N 0.016 4.984 27 O -0.139 6.139 28 O -0.188 6.188 29 N -0.288 5.288 30 O -0.201 6.201 31 H 0.067 0.933 32 H 0.017 0.983 33 H 0.056 0.944 34 H 0.264 0.736 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.171 0.829 39 H 0.110 0.890 40 H 0.184 0.816 41 H 0.198 0.802 42 H 0.194 0.806 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.822 -25.140 -12.841 30.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.160 3.840 3 H 0.020 0.980 4 C -0.575 4.575 5 H 0.090 0.910 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.793 3.207 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.179 1.179 12 N -0.316 5.316 13 C -0.073 4.073 14 C 0.286 3.714 15 O -0.475 6.475 16 C -0.031 4.031 17 H 0.161 0.839 18 C -0.157 4.157 19 C -0.090 4.090 20 C -0.011 4.011 21 C -0.087 4.087 22 C -0.075 4.075 23 C -0.094 4.094 24 C -0.089 4.089 25 C -0.121 4.121 26 N 0.537 4.463 27 O -0.363 6.363 28 O -0.399 6.399 29 N -0.030 5.030 30 O -0.219 6.219 31 H 0.086 0.914 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.189 0.811 39 H 0.128 0.872 40 H 0.202 0.798 41 H 0.215 0.785 42 H 0.211 0.789 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 12.270 -24.078 -12.982 29.981 hybrid contribution -0.487 1.077 1.053 1.583 sum 11.783 -23.001 -11.929 28.464 Atomic orbital electron populations 1.21903 0.96856 1.00602 0.99932 1.18604 0.91806 0.92081 0.81528 0.98044 1.21535 1.32087 1.13277 0.90555 0.91014 1.25815 0.95054 0.95618 1.02317 1.70041 1.37396 1.24038 1.24518 0.85457 0.78340 0.79179 0.77723 1.20213 1.21591 1.17920 1.48156 1.47884 1.13854 1.21666 1.22131 1.02908 0.79734 1.02507 1.20570 0.79490 0.86696 0.84616 1.90687 1.59688 1.19695 1.77391 1.23703 0.96782 0.90638 0.91948 0.83919 1.23030 0.92612 1.01845 0.98223 1.24701 0.96760 0.93531 0.94053 1.17741 0.93402 0.94717 0.95206 1.21871 0.99170 0.89219 0.98484 1.22140 0.90760 0.98956 0.95599 1.21955 0.99083 0.95758 0.92620 1.21286 0.93851 0.92000 1.01785 1.21480 1.05637 0.88902 0.96041 1.44011 0.99978 1.02234 1.00038 1.94602 1.14880 1.70910 1.55910 1.94498 1.27391 1.56721 1.61336 1.78858 1.04726 1.04467 1.14955 1.91405 1.35782 1.28938 1.65799 0.91392 0.96398 0.92484 0.92720 0.90372 0.90351 0.88712 0.81127 0.87231 0.79848 0.78504 0.78913 0.82380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.30 8.95 71.98 0.64 -5.65 16 2 C 0.26 13.25 2.64 44.24 0.12 13.37 16 3 H 0.00 0.10 6.90 -2.39 -0.02 0.08 16 4 C -0.54 -27.55 8.37 25.60 0.21 -27.34 16 5 H 0.07 3.40 7.65 -2.91 -0.02 3.38 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -52.50 11.32 21.45 0.24 -52.25 16 8 Si 0.97 40.94 29.54 68.60 2.03 42.96 16 9 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 12 N -0.58 -23.18 2.75 -826.82 -2.28 -25.46 16 13 C 0.07 1.72 8.34 127.77 1.07 2.79 16 14 C 0.50 21.38 7.06 87.66 0.62 22.00 16 15 O -0.59 -33.25 15.92 14.99 0.24 -33.02 16 16 C 0.03 0.99 3.24 30.44 0.10 1.08 16 17 H 0.14 3.52 7.38 -2.39 -0.02 3.50 16 18 C -0.12 -2.55 4.62 30.76 0.14 -2.41 16 19 C 0.10 2.54 6.94 45.77 0.32 2.86 16 20 C -0.01 -0.15 5.87 -20.13 -0.12 -0.27 16 21 C -0.07 -0.43 9.61 22.53 0.22 -0.22 16 22 C -0.06 -0.01 10.03 22.23 0.22 0.21 16 23 C -0.08 -0.13 10.04 22.33 0.22 0.10 16 24 C -0.07 -0.76 9.78 22.23 0.22 -0.54 16 25 C -0.04 -0.78 6.36 36.64 0.23 -0.55 16 26 N 0.02 0.50 3.81 -45.84 -0.17 0.33 16 27 O -0.14 -4.93 15.75 18.88 0.30 -4.63 16 28 O -0.19 -6.16 19.11 18.89 0.36 -5.80 16 29 N -0.29 -10.45 8.64 -42.22 -0.36 -10.82 16 30 O -0.20 -8.36 11.82 -20.31 -0.24 -8.60 16 31 H 0.07 3.58 6.07 -2.39 -0.01 3.57 16 32 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.06 2.32 6.66 -2.39 -0.02 2.31 16 34 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.08 1.60 8.05 -2.39 -0.02 1.58 16 36 H 0.08 2.03 6.43 -2.39 -0.02 2.02 16 37 H 0.09 1.56 6.07 -2.39 -0.01 1.55 16 38 H 0.17 1.64 7.42 -2.39 -0.02 1.63 16 39 H 0.11 2.57 7.91 -2.39 -0.02 2.55 16 40 H 0.18 0.14 7.52 -2.91 -0.02 0.12 16 41 H 0.20 -1.60 8.06 -2.91 -0.02 -1.62 16 42 H 0.19 -1.20 8.06 -2.91 -0.02 -1.23 16 43 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -93.25 365.79 5.84 -87.41 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: 1.07 Total: 3.40 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 4.66 Total: 6.48 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -2.57 Total: -88.20 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: 0.66 Total: -52.05 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.96 kcal Total: -93.25 5.84 -87.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183021892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.536 kcal (2) G-P(sol) polarization free energy of solvation -93.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds