Wall clock time and date at job start Wed Apr 1 2020 06:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47394 * 2 1 4 4 C 1.50699 * 109.47229 * 239.99572 * 2 1 3 5 5 H 1.07997 * 120.00241 * 239.99919 * 4 2 1 6 6 C 1.37884 * 119.99852 * 60.00086 * 4 2 1 7 7 N 1.31511 * 119.99840 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00114 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47173 * 60.00100 * 8 6 4 10 10 H 1.48493 * 109.47135 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47039 * 300.00151 * 8 6 4 12 12 N 1.46504 * 109.47044 * 119.99853 * 2 1 3 13 13 C 1.46502 * 120.00209 * 59.99860 * 12 2 1 14 14 C 1.34777 * 119.99960 * 240.00118 * 12 2 1 15 15 O 1.21284 * 119.99865 * 359.97438 * 14 12 2 16 16 C 1.50703 * 120.00014 * 179.97438 * 14 12 2 17 17 H 1.09001 * 110.85617 * 52.65502 * 16 14 12 18 18 C 1.54907 * 111.24059 * 288.86421 * 16 14 12 19 19 C 1.51689 * 102.46759 * 266.38404 * 18 16 14 20 20 C 1.47640 * 125.86337 * 164.49415 * 19 18 16 21 21 C 1.39631 * 120.15273 * 353.80279 * 20 19 18 22 22 C 1.37940 * 119.84866 * 180.25270 * 21 20 19 23 23 C 1.38379 * 120.14897 * 359.79062 * 22 21 20 24 24 C 1.38329 * 120.30351 * 359.97438 * 23 22 21 25 25 C 1.37976 * 120.14915 * 359.97438 * 24 23 22 26 26 N 1.48016 * 120.07742 * 180.02562 * 25 24 23 27 27 O 1.21801 * 119.99747 * 132.28365 * 26 25 24 28 28 O 1.21799 * 119.99924 * 312.01494 * 26 25 24 29 29 N 1.29080 * 108.26897 * 344.22531 * 19 18 16 30 30 O 1.41391 * 112.87245 * 359.94811 * 29 19 18 31 31 H 1.08999 * 109.47101 * 60.00231 * 1 2 3 32 32 H 1.09004 * 109.46986 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47224 * 299.99782 * 1 2 3 34 34 H 0.96994 * 120.00294 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47295 * 270.00054 * 13 12 2 36 36 H 1.09005 * 109.46987 * 30.00049 * 13 12 2 37 37 H 1.09000 * 109.47343 * 149.99701 * 13 12 2 38 38 H 1.08994 * 110.92963 * 148.09646 * 18 16 14 39 39 H 1.09004 * 110.73269 * 24.57566 * 18 16 14 40 40 H 1.07996 * 120.07478 * 359.97438 * 21 20 19 41 41 H 1.07996 * 119.92231 * 179.76691 * 22 21 20 42 42 H 1.08002 * 119.84666 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.92759 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8280 -2.5200 -4.0081 10 1 1.8269 -0.4201 -5.2203 11 1 3.8075 -1.1191 -4.0076 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4282 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2950 -0.7458 3.3142 17 1 3.7941 -1.6776 3.0482 18 6 2.1461 -1.0043 4.3206 19 6 2.2329 0.2035 5.2341 20 6 1.1897 0.6507 6.1782 21 6 -0.0564 0.0209 6.1965 22 6 -1.0283 0.4472 7.0776 23 6 -0.7692 1.4937 7.9451 24 6 0.4647 2.1189 7.9357 25 6 1.4463 1.7019 7.0603 26 7 2.7662 2.3716 7.0520 27 8 3.7866 1.7067 7.0639 28 8 2.8319 3.5876 7.0283 29 7 3.3778 0.7700 5.0482 30 8 4.1687 0.1067 4.0819 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.7081 1.1607 -3.4844 35 1 0.7375 -2.1444 1.9995 36 1 1.5295 -2.5969 0.4709 37 1 2.4628 -2.5819 1.9865 38 1 2.3172 -1.9247 4.8788 39 1 1.1842 -1.0341 3.8088 40 1 -0.2602 -0.7952 5.5192 41 1 -1.9937 -0.0366 7.0901 42 1 -1.5338 1.8237 8.6327 43 1 0.6606 2.9348 8.6158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183021911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:45:03 Heat of formation + Delta-G solvation = 16.175523 kcal Electronic energy + Delta-G solvation = -30996.949111 eV Core-core repulsion = 26627.137565 eV Total energy + Delta-G solvation = -4369.811546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.26724 -42.01422 -40.48840 -39.75340 -37.61985 -37.22772 -35.05714 -34.95419 -33.17385 -32.51564 -31.73947 -30.75317 -27.76160 -27.67977 -27.33639 -25.93289 -24.93128 -23.51887 -22.84570 -21.60403 -20.51647 -19.95059 -19.70536 -18.84591 -18.53615 -18.42538 -17.96666 -17.25682 -16.90909 -16.63753 -16.44956 -16.09728 -15.96274 -15.60226 -15.28769 -14.79396 -14.58973 -14.47165 -14.06371 -13.92247 -13.68152 -13.55557 -13.35976 -13.13269 -13.02834 -12.88838 -12.77528 -12.76540 -12.70913 -12.68903 -12.40917 -12.22621 -12.21251 -12.15556 -11.76576 -11.61709 -11.24463 -10.65142 -10.61047 -10.49728 -9.97185 -9.43620 -8.17989 -6.35167 -1.24357 -0.45255 -0.01696 0.38033 0.90319 1.38884 1.42819 1.45126 1.50488 1.81383 2.10898 2.30831 2.41561 2.56212 3.04838 3.10581 3.23269 3.38807 3.49156 3.62381 3.89112 3.93900 3.95467 4.06348 4.30490 4.39039 4.41009 4.48335 4.57846 4.72494 4.74418 4.75980 4.85669 4.99891 5.00991 5.07125 5.07820 5.15674 5.43932 5.48933 5.52777 5.61917 5.97835 6.04641 6.11893 6.38211 6.67547 6.72691 7.20811 7.39018 8.86323 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.002892 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.316900 B = 9680.157381 C =10177.705497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.261 3.739 3 H -0.004 1.004 4 C -0.541 4.541 5 H 0.065 0.935 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.256 1.256 10 H -0.286 1.286 11 H -0.281 1.281 12 N -0.586 5.586 13 C 0.067 3.933 14 C 0.475 3.525 15 O -0.600 6.600 16 C 0.025 3.975 17 H 0.179 0.821 18 C -0.113 4.113 19 C 0.085 3.915 20 C -0.010 4.010 21 C -0.069 4.069 22 C -0.057 4.057 23 C -0.078 4.078 24 C -0.073 4.073 25 C -0.042 4.042 26 N 0.016 4.984 27 O -0.126 6.126 28 O -0.204 6.204 29 N -0.291 5.291 30 O -0.192 6.192 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.172 0.828 39 H 0.132 0.868 40 H 0.187 0.813 41 H 0.200 0.800 42 H 0.194 0.806 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.021 -11.507 23.939 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.159 3.841 3 H 0.014 0.986 4 C -0.579 4.579 5 H 0.084 0.916 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.180 1.180 10 H -0.211 1.211 11 H -0.207 1.207 12 N -0.317 5.317 13 C -0.075 4.075 14 C 0.262 3.738 15 O -0.482 6.482 16 C -0.037 4.037 17 H 0.196 0.804 18 C -0.152 4.152 19 C -0.105 4.105 20 C -0.012 4.012 21 C -0.089 4.089 22 C -0.075 4.075 23 C -0.096 4.096 24 C -0.092 4.092 25 C -0.124 4.124 26 N 0.537 4.463 27 O -0.354 6.354 28 O -0.411 6.411 29 N -0.033 5.033 30 O -0.209 6.209 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.190 0.810 39 H 0.150 0.850 40 H 0.204 0.796 41 H 0.217 0.783 42 H 0.211 0.789 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.707 -10.229 23.897 28.509 hybrid contribution 1.121 0.234 -1.780 2.117 sum -10.586 -9.994 22.117 26.478 Atomic orbital electron populations 1.21824 0.96293 1.00632 0.99859 1.18554 0.92135 0.91749 0.81678 0.98636 1.21559 1.32105 1.13276 0.90992 0.91648 1.25760 0.95018 0.95603 1.02148 1.70020 1.37247 1.23882 1.24536 0.85501 0.78210 0.79262 0.78000 1.17991 1.21113 1.20677 1.48225 1.48083 1.13761 1.21671 1.22149 1.02087 0.79567 1.03659 1.21546 0.79278 0.87050 0.85951 1.90695 1.59491 1.20123 1.77891 1.24018 0.93877 0.95408 0.90352 0.80449 1.23116 1.00617 0.98250 0.93215 1.24813 0.93192 0.95821 0.96683 1.17845 0.94643 0.94922 0.93836 1.21888 0.88285 0.99368 0.99375 1.22160 1.00635 0.94060 0.90618 1.21952 0.94537 0.94189 0.98962 1.21287 0.91891 0.99720 0.96271 1.21539 0.84266 1.00230 1.06411 1.44000 1.04002 1.00829 0.97447 1.94567 1.25889 1.64893 1.50010 1.94508 1.94447 0.96992 1.55106 1.78796 1.05002 1.15691 1.03771 1.91330 1.27515 1.59162 1.42926 0.91706 0.92400 0.96137 0.92645 0.89653 0.90761 0.88721 0.81013 0.84967 0.79591 0.78280 0.78851 0.82554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.83 8.97 71.98 0.65 -5.19 16 2 C 0.26 13.39 2.64 44.24 0.12 13.51 16 3 H 0.00 -0.28 6.90 -2.39 -0.02 -0.30 16 4 C -0.54 -28.91 7.99 25.60 0.20 -28.71 16 5 H 0.07 3.33 7.33 -2.91 -0.02 3.31 16 6 C 0.01 0.79 5.30 84.66 0.45 1.23 16 7 N -0.92 -53.02 11.32 21.45 0.24 -52.78 16 8 Si 0.97 42.64 29.54 68.60 2.03 44.66 16 9 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 10 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.59 -23.35 2.75 -826.78 -2.28 -25.62 16 13 C 0.07 1.67 8.34 127.77 1.07 2.73 16 14 C 0.47 20.32 7.04 87.66 0.62 20.94 16 15 O -0.60 -34.40 15.92 14.97 0.24 -34.16 16 16 C 0.03 0.76 3.22 30.50 0.10 0.86 16 17 H 0.18 3.80 7.06 -2.39 -0.02 3.78 16 18 C -0.11 -2.15 5.41 30.82 0.17 -1.98 16 19 C 0.08 2.36 6.93 45.76 0.32 2.68 16 20 C -0.01 -0.22 5.87 -20.13 -0.12 -0.34 16 21 C -0.07 -0.61 9.61 22.54 0.22 -0.40 16 22 C -0.06 -0.15 10.03 22.23 0.22 0.07 16 23 C -0.08 -0.36 10.04 22.33 0.22 -0.13 16 24 C -0.07 -1.05 9.78 22.23 0.22 -0.83 16 25 C -0.04 -1.02 6.36 36.64 0.23 -0.79 16 26 N 0.02 0.56 3.80 -45.83 -0.17 0.39 16 27 O -0.13 -4.82 15.77 18.88 0.30 -4.52 16 28 O -0.20 -7.69 19.11 18.89 0.36 -7.32 16 29 N -0.29 -11.31 8.65 -42.23 -0.37 -11.68 16 30 O -0.19 -7.71 11.82 -20.31 -0.24 -7.95 16 31 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 32 H 0.06 2.28 7.67 -2.38 -0.02 2.26 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.09 1.48 7.54 -2.39 -0.02 1.47 16 36 H 0.07 2.10 7.02 -2.38 -0.02 2.08 16 37 H 0.09 1.59 6.25 -2.39 -0.01 1.58 16 38 H 0.17 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.13 1.94 6.35 -2.39 -0.02 1.92 16 40 H 0.19 0.38 7.25 -2.91 -0.02 0.35 16 41 H 0.20 -1.27 8.06 -2.91 -0.02 -1.29 16 42 H 0.19 -0.71 8.06 -2.91 -0.02 -0.73 16 43 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -98.78 365.75 5.86 -92.92 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: 1.07 Total: 2.39 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 4.68 Total: 3.67 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -2.57 Total: -89.69 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: 0.66 Total: -53.96 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -98.78 5.86 -92.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183021911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.099 kcal (2) G-P(sol) polarization free energy of solvation -98.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds