Wall clock time and date at job start Wed Apr 1 2020 06:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47208 * 2 1 4 4 C 1.50699 * 109.47237 * 119.99810 * 2 1 3 5 5 H 1.08000 * 120.00313 * 120.00061 * 4 2 1 6 6 C 1.37877 * 120.00181 * 299.99876 * 4 2 1 7 7 N 1.31522 * 119.99863 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00368 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46887 * 89.99983 * 8 6 4 10 10 H 1.48496 * 109.47357 * 209.99944 * 8 6 4 11 11 H 1.48504 * 109.47146 * 330.00429 * 8 6 4 12 12 N 1.46500 * 109.47133 * 239.99638 * 2 1 3 13 13 C 1.46498 * 119.99877 * 299.99946 * 12 2 1 14 14 C 1.34775 * 119.99737 * 120.00087 * 12 2 1 15 15 O 1.21287 * 119.99593 * 175.38034 * 14 12 2 16 16 C 1.50697 * 120.00131 * 355.37459 * 14 12 2 17 17 H 1.08998 * 110.86323 * 306.12471 * 16 14 12 18 18 C 1.54733 * 110.97218 * 69.93011 * 16 14 12 19 19 C 1.51687 * 102.55296 * 93.88994 * 18 16 14 20 20 C 1.47645 * 125.87077 * 195.39212 * 19 18 16 21 21 C 1.39640 * 120.14351 * 354.55305 * 20 19 18 22 22 C 1.37930 * 119.84580 * 180.25296 * 21 20 19 23 23 C 1.38383 * 120.14925 * 359.78618 * 22 21 20 24 24 C 1.38338 * 120.30309 * 359.97438 * 23 22 21 25 25 C 1.37980 * 120.14813 * 359.97438 * 24 23 22 26 26 N 1.48012 * 120.07515 * 179.97438 * 25 24 23 27 27 O 1.21802 * 119.99357 * 132.94422 * 26 25 24 28 28 O 1.21799 * 120.00193 * 312.67509 * 26 25 24 29 29 N 1.29079 * 108.26645 * 15.65703 * 19 18 16 30 30 O 1.41389 * 112.87644 * 359.87929 * 29 19 18 31 31 H 1.08997 * 109.47379 * 60.00037 * 1 2 3 32 32 H 1.09003 * 109.47277 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46831 * 299.99816 * 1 2 3 34 34 H 0.96996 * 119.99531 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47205 * 270.01758 * 13 12 2 36 36 H 1.09002 * 109.47604 * 30.02254 * 13 12 2 37 37 H 1.09009 * 109.47055 * 150.01914 * 13 12 2 38 38 H 1.08998 * 110.79426 * 335.62460 * 18 16 14 39 39 H 1.09005 * 110.79158 * 212.15252 * 18 16 14 40 40 H 1.07992 * 120.07909 * 0.02562 * 21 20 19 41 41 H 1.07996 * 119.92984 * 179.76834 * 22 21 20 42 42 H 1.08001 * 119.85318 * 179.97438 * 23 22 21 43 43 H 1.08004 * 119.92532 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.6298 -0.5457 4.4124 10 1 1.3432 -0.9490 5.1121 11 1 2.4859 -2.5661 3.7121 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4278 14 6 2.7932 -0.0357 -2.0833 15 8 3.2663 -0.6292 -3.0293 16 6 3.0715 1.4339 -1.8999 17 1 2.1426 1.9956 -1.8014 18 6 3.9962 1.6748 -0.6828 19 6 5.3736 1.7103 -1.3171 20 6 6.6593 1.5948 -0.6006 21 6 6.6828 1.5511 0.7950 22 6 7.8878 1.4484 1.4583 23 6 9.0712 1.3842 0.7438 24 6 9.0547 1.4220 -0.6389 25 6 7.8563 1.5235 -1.3151 26 7 7.8405 1.5643 -2.7946 27 8 7.0636 0.8607 -3.4149 28 8 8.6010 2.3051 -3.3916 29 7 5.2287 1.8644 -2.5905 30 8 3.8730 1.9466 -2.9835 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.7082 1.1609 3.4844 35 1 2.4155 -2.7377 -0.9712 36 1 0.6902 -2.3002 -0.9848 37 1 1.6241 -2.2855 -2.5001 38 1 3.9195 0.8537 0.0299 39 1 3.7659 2.6268 -0.2043 40 1 5.7601 1.6013 1.3537 41 1 7.9079 1.4183 2.5376 42 1 10.0120 1.3043 1.2681 43 1 9.9819 1.3711 -1.1904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183021930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:45:07 Heat of formation + Delta-G solvation = 39.253859 kcal Electronic energy + Delta-G solvation = -31724.919829 eV Core-core repulsion = 27356.109035 eV Total energy + Delta-G solvation = -4368.810794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04237 -40.62536 -39.46764 -38.27655 -36.27729 -35.74331 -33.86336 -32.83776 -32.24524 -30.94329 -30.71694 -29.32543 -26.80698 -26.45390 -25.52756 -24.04695 -23.83681 -22.37319 -21.40323 -20.51550 -19.26496 -18.67588 -18.38725 -17.51246 -17.17523 -16.90874 -16.41723 -15.74327 -15.47847 -15.39501 -15.08821 -14.93636 -14.64649 -14.31221 -14.14383 -13.57124 -13.29447 -12.98283 -12.88184 -12.60991 -12.46171 -12.24722 -11.93180 -11.75099 -11.58984 -11.48427 -11.38419 -11.26493 -11.13800 -10.97126 -10.95427 -10.88210 -10.60419 -10.50575 -10.38247 -10.16707 -9.81837 -9.53007 -9.27667 -8.77594 -8.63746 -7.79710 -6.37839 -4.47715 -0.17522 0.43950 1.11385 1.45750 1.99988 2.86934 3.03726 3.10383 3.14946 3.16987 3.24134 3.63913 3.75604 4.12088 4.15213 4.34219 4.47865 4.58651 4.65610 4.72473 4.84417 4.92626 4.97508 5.20873 5.34061 5.44544 5.54018 5.62839 5.68593 5.82521 5.98466 6.01287 6.05335 6.15580 6.31877 6.45480 6.51142 6.58851 6.73066 7.01265 7.17967 7.31169 7.47708 7.67079 7.80242 7.90826 8.23462 8.55946 8.81533 9.21833 10.66145 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010689 B = 0.004561 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.986230 B = 6137.817544 C = 7937.301158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.248 3.752 3 H 0.052 0.948 4 C -0.532 4.532 5 H 0.063 0.937 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.588 5.588 13 C 0.099 3.901 14 C 0.492 3.508 15 O -0.541 6.541 16 C 0.033 3.967 17 H 0.141 0.859 18 C -0.131 4.131 19 C 0.074 3.926 20 C 0.031 3.969 21 C -0.079 4.079 22 C -0.077 4.077 23 C -0.102 4.102 24 C -0.068 4.068 25 C -0.012 4.012 26 N 0.014 4.986 27 O -0.086 6.086 28 O -0.175 6.175 29 N -0.232 5.232 30 O -0.157 6.157 31 H 0.014 0.986 32 H 0.036 0.964 33 H 0.096 0.904 34 H 0.266 0.734 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.132 0.868 39 H 0.115 0.885 40 H 0.160 0.840 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.592 3.069 2.731 11.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.147 3.853 3 H 0.070 0.930 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.321 5.321 13 C -0.044 4.044 14 C 0.277 3.723 15 O -0.419 6.419 16 C -0.029 4.029 17 H 0.158 0.842 18 C -0.170 4.170 19 C -0.116 4.116 20 C 0.029 3.971 21 C -0.099 4.099 22 C -0.095 4.095 23 C -0.121 4.121 24 C -0.087 4.087 25 C -0.095 4.095 26 N 0.541 4.459 27 O -0.318 6.318 28 O -0.384 6.384 29 N 0.029 4.971 30 O -0.177 6.177 31 H 0.033 0.967 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.150 0.850 39 H 0.133 0.867 40 H 0.177 0.823 41 H 0.167 0.833 42 H 0.166 0.834 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.194 3.115 1.930 11.779 hybrid contribution -0.448 -0.640 1.435 1.634 sum 10.746 2.475 3.365 11.529 Atomic orbital electron populations 1.22148 0.97810 1.00249 1.01057 1.19194 0.91893 0.93144 0.81022 0.93036 1.21315 1.32339 1.13510 0.89849 0.91863 1.24877 0.94647 0.94887 0.98942 1.69851 1.35645 1.22512 1.24215 0.86524 0.78625 0.80284 0.82252 1.20503 1.20985 1.19769 1.48218 1.48685 1.12091 1.23121 1.21376 1.00501 0.82059 1.00495 1.20508 0.79963 0.88657 0.83128 1.90695 1.50972 1.68404 1.31869 1.23604 0.97739 0.94996 0.86556 0.84187 1.23035 0.86741 1.07408 0.99844 1.24117 0.94924 0.99812 0.92746 1.17525 0.87202 0.99249 0.93118 1.21509 1.00561 0.96949 0.90884 1.21524 0.91485 0.94894 1.01617 1.21320 0.99708 0.98883 0.92216 1.20855 0.95829 0.96856 0.95182 1.21172 0.95948 1.11913 0.80464 1.43433 0.99736 0.99856 1.02868 1.94696 1.32206 1.37462 1.67406 1.94505 1.37549 1.36589 1.69734 1.78685 0.98660 1.07618 1.12121 1.91308 1.09344 1.80216 1.36881 0.96667 0.94508 0.88543 0.92370 0.93454 0.91059 0.92269 0.84967 0.86696 0.82286 0.83274 0.83363 0.83406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.95 37.16 0.33 -2.83 16 2 C 0.25 5.16 1.74 -69.08 -0.12 5.04 16 3 H 0.05 1.07 4.75 -51.93 -0.25 0.82 16 4 C -0.53 -12.00 7.91 -34.44 -0.27 -12.28 16 5 H 0.06 1.48 7.65 -52.49 -0.40 1.08 16 6 C 0.07 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.88 -20.76 11.32 55.43 0.63 -20.13 16 8 Si 0.90 18.08 29.54 -169.99 -5.02 13.06 16 9 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 10 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 12 N -0.59 -11.94 2.75 -175.26 -0.48 -12.42 16 13 C 0.10 1.84 9.64 59.85 0.58 2.42 16 14 C 0.49 10.41 7.05 -10.99 -0.08 10.34 16 15 O -0.54 -13.22 16.21 -13.30 -0.22 -13.44 16 16 C 0.03 0.61 3.20 -26.97 -0.09 0.52 16 17 H 0.14 2.28 7.72 -51.93 -0.40 1.88 16 18 C -0.13 -2.14 4.48 -26.48 -0.12 -2.26 16 19 C 0.07 1.27 6.94 -79.42 -0.55 0.72 16 20 C 0.03 0.45 5.87 -105.03 -0.62 -0.17 16 21 C -0.08 -0.85 9.61 -39.17 -0.38 -1.23 16 22 C -0.08 -0.61 10.03 -39.64 -0.40 -1.00 16 23 C -0.10 -0.75 10.04 -39.49 -0.40 -1.14 16 24 C -0.07 -0.69 9.77 -39.64 -0.39 -1.08 16 25 C -0.01 -0.17 6.37 -79.54 -0.51 -0.68 16 26 N 0.01 0.25 3.82 34.16 0.13 0.38 16 27 O -0.09 -1.75 15.71 -29.46 -0.46 -2.22 16 28 O -0.17 -3.04 19.10 -29.46 -0.56 -3.60 16 29 N -0.23 -4.65 8.62 35.30 0.30 -4.35 16 30 O -0.16 -3.22 11.82 -30.22 -0.36 -3.58 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.04 0.73 6.66 -51.93 -0.35 0.39 16 33 H 0.10 2.16 6.07 -51.93 -0.32 1.84 16 34 H 0.27 6.05 8.31 -40.82 -0.34 5.71 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 37 H 0.06 1.08 7.49 -51.92 -0.39 0.69 16 38 H 0.13 2.30 6.32 -51.93 -0.33 1.98 16 39 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.16 1.58 7.51 -52.49 -0.39 1.19 16 41 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -31.00 364.62 -8.46 -39.46 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.83 Total: 3.48 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -3.09 Total: -2.13 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.58 Total: -36.52 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -1.60 Total: -22.84 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.00 -8.46 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183021930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.713 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds