Wall clock time and date at job start Wed Apr 1 2020 06:45:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.47208 * 2 1
4 4 C 1.50699 * 109.47237 * 119.99810 * 2 1 3
5 5 H 1.08000 * 120.00313 * 120.00061 * 4 2 1
6 6 C 1.37877 * 120.00181 * 299.99876 * 4 2 1
7 7 N 1.31522 * 119.99863 * 0.02562 * 6 4 2
8 8 Si 1.86801 * 120.00368 * 179.97438 * 6 4 2
9 9 H 1.48504 * 109.46887 * 89.99983 * 8 6 4
10 10 H 1.48496 * 109.47357 * 209.99944 * 8 6 4
11 11 H 1.48504 * 109.47146 * 330.00429 * 8 6 4
12 12 N 1.46500 * 109.47133 * 239.99638 * 2 1 3
13 13 C 1.46498 * 119.99877 * 299.99946 * 12 2 1
14 14 C 1.34775 * 119.99737 * 120.00087 * 12 2 1
15 15 O 1.21287 * 119.99593 * 175.38034 * 14 12 2
16 16 C 1.50697 * 120.00131 * 355.37459 * 14 12 2
17 17 H 1.08998 * 110.86323 * 306.12471 * 16 14 12
18 18 C 1.54733 * 110.97218 * 69.93011 * 16 14 12
19 19 C 1.51687 * 102.55296 * 93.88994 * 18 16 14
20 20 C 1.47645 * 125.87077 * 195.39212 * 19 18 16
21 21 C 1.39640 * 120.14351 * 354.55305 * 20 19 18
22 22 C 1.37930 * 119.84580 * 180.25296 * 21 20 19
23 23 C 1.38383 * 120.14925 * 359.78618 * 22 21 20
24 24 C 1.38338 * 120.30309 * 359.97438 * 23 22 21
25 25 C 1.37980 * 120.14813 * 359.97438 * 24 23 22
26 26 N 1.48012 * 120.07515 * 179.97438 * 25 24 23
27 27 O 1.21802 * 119.99357 * 132.94422 * 26 25 24
28 28 O 1.21799 * 120.00193 * 312.67509 * 26 25 24
29 29 N 1.29079 * 108.26645 * 15.65703 * 19 18 16
30 30 O 1.41389 * 112.87644 * 359.87929 * 29 19 18
31 31 H 1.08997 * 109.47379 * 60.00037 * 1 2 3
32 32 H 1.09003 * 109.47277 * 180.02562 * 1 2 3
33 33 H 1.08998 * 109.46831 * 299.99816 * 1 2 3
34 34 H 0.96996 * 119.99531 * 179.97438 * 7 6 4
35 35 H 1.08999 * 109.47205 * 270.01758 * 13 12 2
36 36 H 1.09002 * 109.47604 * 30.02254 * 13 12 2
37 37 H 1.09009 * 109.47055 * 150.01914 * 13 12 2
38 38 H 1.08998 * 110.79426 * 335.62460 * 18 16 14
39 39 H 1.09005 * 110.79158 * 212.15252 * 18 16 14
40 40 H 1.07992 * 120.07909 * 0.02562 * 21 20 19
41 41 H 1.07996 * 119.92984 * 179.76834 * 22 21 20
42 42 H 1.08001 * 119.85318 * 179.97438 * 23 22 21
43 43 H 1.08004 * 119.92532 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6533 -1.5884 1.1314
6 6 1.6993 -0.2393 2.4827
7 7 0.9428 0.8298 2.6034
8 14 2.3214 -1.1202 4.0080
9 1 3.6298 -0.5457 4.4124
10 1 1.3432 -0.9490 5.1121
11 1 2.4859 -2.5661 3.7121
12 7 2.0183 -0.6907 -1.1961
13 6 1.6644 -2.0933 -1.4278
14 6 2.7932 -0.0357 -2.0833
15 8 3.2663 -0.6292 -3.0293
16 6 3.0715 1.4339 -1.8999
17 1 2.1426 1.9956 -1.8014
18 6 3.9962 1.6748 -0.6828
19 6 5.3736 1.7103 -1.3171
20 6 6.6593 1.5948 -0.6006
21 6 6.6828 1.5511 0.7950
22 6 7.8878 1.4484 1.4583
23 6 9.0712 1.3842 0.7438
24 6 9.0547 1.4220 -0.6389
25 6 7.8563 1.5235 -1.3151
26 7 7.8405 1.5643 -2.7946
27 8 7.0636 0.8607 -3.4149
28 8 8.6010 2.3051 -3.3916
29 7 5.2287 1.8644 -2.5905
30 8 3.8730 1.9466 -2.9835
31 1 -0.3634 0.5138 -0.8899
32 1 -0.3634 -1.0277 0.0005
33 1 -0.3633 0.5138 0.8900
34 1 0.7082 1.1609 3.4844
35 1 2.4155 -2.7377 -0.9712
36 1 0.6902 -2.3002 -0.9848
37 1 1.6241 -2.2855 -2.5001
38 1 3.9195 0.8537 0.0299
39 1 3.7659 2.6268 -0.2043
40 1 5.7601 1.6013 1.3537
41 1 7.9079 1.4183 2.5376
42 1 10.0120 1.3043 1.2681
43 1 9.9819 1.3711 -1.1904
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000183021930.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:45:07
Heat of formation + Delta-G solvation = 39.253859 kcal
Electronic energy + Delta-G solvation = -31724.919829 eV
Core-core repulsion = 27356.109035 eV
Total energy + Delta-G solvation = -4368.810794 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.136 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-42.04237 -40.62536 -39.46764 -38.27655 -36.27729 -35.74331 -33.86336 -32.83776
-32.24524 -30.94329 -30.71694 -29.32543 -26.80698 -26.45390 -25.52756 -24.04695
-23.83681 -22.37319 -21.40323 -20.51550 -19.26496 -18.67588 -18.38725 -17.51246
-17.17523 -16.90874 -16.41723 -15.74327 -15.47847 -15.39501 -15.08821 -14.93636
-14.64649 -14.31221 -14.14383 -13.57124 -13.29447 -12.98283 -12.88184 -12.60991
-12.46171 -12.24722 -11.93180 -11.75099 -11.58984 -11.48427 -11.38419 -11.26493
-11.13800 -10.97126 -10.95427 -10.88210 -10.60419 -10.50575 -10.38247 -10.16707
-9.81837 -9.53007 -9.27667 -8.77594 -8.63746 -7.79710 -6.37839 -4.47715
-0.17522 0.43950 1.11385 1.45750 1.99988 2.86934 3.03726 3.10383
3.14946 3.16987 3.24134 3.63913 3.75604 4.12088 4.15213 4.34219
4.47865 4.58651 4.65610 4.72473 4.84417 4.92626 4.97508 5.20873
5.34061 5.44544 5.54018 5.62839 5.68593 5.82521 5.98466 6.01287
6.05335 6.15580 6.31877 6.45480 6.51142 6.58851 6.73066 7.01265
7.17967 7.31169 7.47708 7.67079 7.80242 7.90826 8.23462 8.55946
8.81533 9.21833 10.66145
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.010689 B = 0.004561 C = 0.003527
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2618.986230 B = 6137.817544 C = 7937.301158
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.248 3.752
3 H 0.052 0.948
4 C -0.532 4.532
5 H 0.063 0.937
6 C 0.070 3.930
7 N -0.885 5.885
8 Si 0.896 3.104
9 H -0.279 1.279
10 H -0.284 1.284
11 H -0.273 1.273
12 N -0.588 5.588
13 C 0.099 3.901
14 C 0.492 3.508
15 O -0.541 6.541
16 C 0.033 3.967
17 H 0.141 0.859
18 C -0.131 4.131
19 C 0.074 3.926
20 C 0.031 3.969
21 C -0.079 4.079
22 C -0.077 4.077
23 C -0.102 4.102
24 C -0.068 4.068
25 C -0.012 4.012
26 N 0.014 4.986
27 O -0.086 6.086
28 O -0.175 6.175
29 N -0.232 5.232
30 O -0.157 6.157
31 H 0.014 0.986
32 H 0.036 0.964
33 H 0.096 0.904
34 H 0.266 0.734
35 H 0.047 0.953
36 H 0.071 0.929
37 H 0.059 0.941
38 H 0.132 0.868
39 H 0.115 0.885
40 H 0.160 0.840
41 H 0.150 0.850
42 H 0.149 0.851
43 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.592 3.069 2.731 11.361
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.147 3.853
3 H 0.070 0.930
4 C -0.570 4.570
5 H 0.081 0.919
6 C -0.134 4.134
7 N -0.522 5.522
8 Si 0.723 3.277
9 H -0.205 1.205
10 H -0.210 1.210
11 H -0.198 1.198
12 N -0.321 5.321
13 C -0.044 4.044
14 C 0.277 3.723
15 O -0.419 6.419
16 C -0.029 4.029
17 H 0.158 0.842
18 C -0.170 4.170
19 C -0.116 4.116
20 C 0.029 3.971
21 C -0.099 4.099
22 C -0.095 4.095
23 C -0.121 4.121
24 C -0.087 4.087
25 C -0.095 4.095
26 N 0.541 4.459
27 O -0.318 6.318
28 O -0.384 6.384
29 N 0.029 4.971
30 O -0.177 6.177
31 H 0.033 0.967
32 H 0.055 0.945
33 H 0.115 0.885
34 H 0.076 0.924
35 H 0.065 0.935
36 H 0.089 0.911
37 H 0.077 0.923
38 H 0.150 0.850
39 H 0.133 0.867
40 H 0.177 0.823
41 H 0.167 0.833
42 H 0.166 0.834
43 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges 11.194 3.115 1.930 11.779
hybrid contribution -0.448 -0.640 1.435 1.634
sum 10.746 2.475 3.365 11.529
Atomic orbital electron populations
1.22148 0.97810 1.00249 1.01057 1.19194 0.91893 0.93144 0.81022
0.93036 1.21315 1.32339 1.13510 0.89849 0.91863 1.24877 0.94647
0.94887 0.98942 1.69851 1.35645 1.22512 1.24215 0.86524 0.78625
0.80284 0.82252 1.20503 1.20985 1.19769 1.48218 1.48685 1.12091
1.23121 1.21376 1.00501 0.82059 1.00495 1.20508 0.79963 0.88657
0.83128 1.90695 1.50972 1.68404 1.31869 1.23604 0.97739 0.94996
0.86556 0.84187 1.23035 0.86741 1.07408 0.99844 1.24117 0.94924
0.99812 0.92746 1.17525 0.87202 0.99249 0.93118 1.21509 1.00561
0.96949 0.90884 1.21524 0.91485 0.94894 1.01617 1.21320 0.99708
0.98883 0.92216 1.20855 0.95829 0.96856 0.95182 1.21172 0.95948
1.11913 0.80464 1.43433 0.99736 0.99856 1.02868 1.94696 1.32206
1.37462 1.67406 1.94505 1.37549 1.36589 1.69734 1.78685 0.98660
1.07618 1.12121 1.91308 1.09344 1.80216 1.36881 0.96667 0.94508
0.88543 0.92370 0.93454 0.91059 0.92269 0.84967 0.86696 0.82286
0.83274 0.83363 0.83406
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.16 8.95 37.16 0.33 -2.83 16
2 C 0.25 5.16 1.74 -69.08 -0.12 5.04 16
3 H 0.05 1.07 4.75 -51.93 -0.25 0.82 16
4 C -0.53 -12.00 7.91 -34.44 -0.27 -12.28 16
5 H 0.06 1.48 7.65 -52.49 -0.40 1.08 16
6 C 0.07 1.59 5.30 -17.82 -0.09 1.50 16
7 N -0.88 -20.76 11.32 55.43 0.63 -20.13 16
8 Si 0.90 18.08 29.54 -169.99 -5.02 13.06 16
9 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16
10 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16
11 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16
12 N -0.59 -11.94 2.75 -175.26 -0.48 -12.42 16
13 C 0.10 1.84 9.64 59.85 0.58 2.42 16
14 C 0.49 10.41 7.05 -10.99 -0.08 10.34 16
15 O -0.54 -13.22 16.21 -13.30 -0.22 -13.44 16
16 C 0.03 0.61 3.20 -26.97 -0.09 0.52 16
17 H 0.14 2.28 7.72 -51.93 -0.40 1.88 16
18 C -0.13 -2.14 4.48 -26.48 -0.12 -2.26 16
19 C 0.07 1.27 6.94 -79.42 -0.55 0.72 16
20 C 0.03 0.45 5.87 -105.03 -0.62 -0.17 16
21 C -0.08 -0.85 9.61 -39.17 -0.38 -1.23 16
22 C -0.08 -0.61 10.03 -39.64 -0.40 -1.00 16
23 C -0.10 -0.75 10.04 -39.49 -0.40 -1.14 16
24 C -0.07 -0.69 9.77 -39.64 -0.39 -1.08 16
25 C -0.01 -0.17 6.37 -79.54 -0.51 -0.68 16
26 N 0.01 0.25 3.82 34.16 0.13 0.38 16
27 O -0.09 -1.75 15.71 -29.46 -0.46 -2.22 16
28 O -0.17 -3.04 19.10 -29.46 -0.56 -3.60 16
29 N -0.23 -4.65 8.62 35.30 0.30 -4.35 16
30 O -0.16 -3.22 11.82 -30.22 -0.36 -3.58 16
31 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16
32 H 0.04 0.73 6.66 -51.93 -0.35 0.39 16
33 H 0.10 2.16 6.07 -51.93 -0.32 1.84 16
34 H 0.27 6.05 8.31 -40.82 -0.34 5.71 16
35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
36 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16
37 H 0.06 1.08 7.49 -51.92 -0.39 0.69 16
38 H 0.13 2.30 6.32 -51.93 -0.33 1.98 16
39 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16
40 H 0.16 1.58 7.51 -52.49 -0.39 1.19 16
41 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16
42 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16
43 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16
LS Contribution 364.62 15.07 5.49 5.49
Total: -1.00 -31.00 364.62 -8.46 -39.46
By element:
Atomic # 1 Polarization: 8.31 SS G_CDS: -4.83 Total: 3.48 kcal
Atomic # 6 Polarization: 0.96 SS G_CDS: -3.09 Total: -2.13 kcal
Atomic # 7 Polarization: -37.10 SS G_CDS: 0.58 Total: -36.52 kcal
Atomic # 8 Polarization: -21.24 SS G_CDS: -1.60 Total: -22.84 kcal
Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.06 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -31.00 -8.46 -39.46 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183021930.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.713 kcal
(2) G-P(sol) polarization free energy of solvation -30.996 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.717 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.254 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds