Wall clock time and date at job start Wed Apr 1 2020 06:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47208 * 2 1 4 4 C 1.50699 * 109.47237 * 119.99810 * 2 1 3 5 5 H 1.08000 * 120.00313 * 120.00061 * 4 2 1 6 6 C 1.37877 * 120.00181 * 299.99876 * 4 2 1 7 7 N 1.31522 * 119.99863 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00368 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46887 * 89.99983 * 8 6 4 10 10 H 1.48496 * 109.47357 * 209.99944 * 8 6 4 11 11 H 1.48504 * 109.47146 * 330.00429 * 8 6 4 12 12 N 1.46500 * 109.47133 * 239.99638 * 2 1 3 13 13 C 1.46498 * 119.99877 * 299.99946 * 12 2 1 14 14 C 1.34775 * 119.99737 * 120.00087 * 12 2 1 15 15 O 1.21287 * 119.99593 * 175.38034 * 14 12 2 16 16 C 1.50697 * 120.00131 * 355.37459 * 14 12 2 17 17 H 1.08998 * 110.86323 * 306.12471 * 16 14 12 18 18 C 1.54733 * 110.97218 * 69.93011 * 16 14 12 19 19 C 1.51687 * 102.55296 * 93.88994 * 18 16 14 20 20 C 1.47645 * 125.87077 * 195.39212 * 19 18 16 21 21 C 1.39640 * 120.14351 * 354.55305 * 20 19 18 22 22 C 1.37930 * 119.84580 * 180.25296 * 21 20 19 23 23 C 1.38383 * 120.14925 * 359.78618 * 22 21 20 24 24 C 1.38338 * 120.30309 * 359.97438 * 23 22 21 25 25 C 1.37980 * 120.14813 * 359.97438 * 24 23 22 26 26 N 1.48012 * 120.07515 * 179.97438 * 25 24 23 27 27 O 1.21802 * 119.99357 * 132.94422 * 26 25 24 28 28 O 1.21799 * 120.00193 * 312.67509 * 26 25 24 29 29 N 1.29079 * 108.26645 * 15.65703 * 19 18 16 30 30 O 1.41389 * 112.87644 * 359.87929 * 29 19 18 31 31 H 1.08997 * 109.47379 * 60.00037 * 1 2 3 32 32 H 1.09003 * 109.47277 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46831 * 299.99816 * 1 2 3 34 34 H 0.96996 * 119.99531 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47205 * 270.01758 * 13 12 2 36 36 H 1.09002 * 109.47604 * 30.02254 * 13 12 2 37 37 H 1.09009 * 109.47055 * 150.01914 * 13 12 2 38 38 H 1.08998 * 110.79426 * 335.62460 * 18 16 14 39 39 H 1.09005 * 110.79158 * 212.15252 * 18 16 14 40 40 H 1.07992 * 120.07909 * 0.02562 * 21 20 19 41 41 H 1.07996 * 119.92984 * 179.76834 * 22 21 20 42 42 H 1.08001 * 119.85318 * 179.97438 * 23 22 21 43 43 H 1.08004 * 119.92532 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.6298 -0.5457 4.4124 10 1 1.3432 -0.9490 5.1121 11 1 2.4859 -2.5661 3.7121 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4278 14 6 2.7932 -0.0357 -2.0833 15 8 3.2663 -0.6292 -3.0293 16 6 3.0715 1.4339 -1.8999 17 1 2.1426 1.9956 -1.8014 18 6 3.9962 1.6748 -0.6828 19 6 5.3736 1.7103 -1.3171 20 6 6.6593 1.5948 -0.6006 21 6 6.6828 1.5511 0.7950 22 6 7.8878 1.4484 1.4583 23 6 9.0712 1.3842 0.7438 24 6 9.0547 1.4220 -0.6389 25 6 7.8563 1.5235 -1.3151 26 7 7.8405 1.5643 -2.7946 27 8 7.0636 0.8607 -3.4149 28 8 8.6010 2.3051 -3.3916 29 7 5.2287 1.8644 -2.5905 30 8 3.8730 1.9466 -2.9835 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.7082 1.1609 3.4844 35 1 2.4155 -2.7377 -0.9712 36 1 0.6902 -2.3002 -0.9848 37 1 1.6241 -2.2855 -2.5001 38 1 3.9195 0.8537 0.0299 39 1 3.7659 2.6268 -0.2043 40 1 5.7601 1.6013 1.3537 41 1 7.9079 1.4183 2.5376 42 1 10.0120 1.3043 1.2681 43 1 9.9819 1.3711 -1.1904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183021930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:45:06 Heat of formation + Delta-G solvation = 22.532934 kcal Electronic energy + Delta-G solvation = -31725.644902 eV Core-core repulsion = 27356.109035 eV Total energy + Delta-G solvation = -4369.535868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.26737 -42.06396 -40.50432 -39.74216 -37.60113 -37.46437 -35.05193 -34.57383 -33.18656 -32.32662 -31.74383 -31.02000 -28.24467 -27.67176 -27.27084 -25.32425 -24.92912 -23.51777 -22.97151 -21.68970 -20.61832 -19.95728 -19.63778 -18.84836 -18.60869 -18.39927 -17.78611 -17.01608 -16.89265 -16.64012 -16.41778 -16.04957 -15.99469 -15.76776 -15.26902 -14.78129 -14.61323 -14.47483 -14.32240 -13.89213 -13.72092 -13.40787 -13.35069 -13.09992 -13.06302 -12.89482 -12.74955 -12.73842 -12.71643 -12.52730 -12.39398 -12.20491 -12.15816 -12.05276 -11.92376 -11.51348 -11.22138 -10.68299 -10.62030 -10.46750 -9.95650 -9.49098 -8.11608 -6.26479 -1.26498 -0.45506 -0.01127 0.35360 0.87337 1.38599 1.45830 1.53837 1.59712 1.76231 2.12275 2.28208 2.46955 2.58355 3.02300 3.17676 3.26952 3.38367 3.43884 3.61814 3.87689 3.93033 3.96897 4.06061 4.28596 4.32840 4.45103 4.54038 4.60014 4.61232 4.69720 4.75715 4.89564 4.95865 4.98074 5.04905 5.07748 5.14754 5.33959 5.47063 5.53469 5.71999 5.94385 5.97704 6.19025 6.40865 6.55353 6.79665 7.14363 7.45667 8.91252 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010689 B = 0.004561 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.986230 B = 6137.817544 C = 7937.301158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.251 3.749 3 H 0.056 0.944 4 C -0.539 4.539 5 H 0.051 0.949 6 C 0.041 3.959 7 N -0.901 5.901 8 Si 0.946 3.054 9 H -0.263 1.263 10 H -0.289 1.289 11 H -0.282 1.282 12 N -0.586 5.586 13 C 0.097 3.903 14 C 0.487 3.513 15 O -0.583 6.583 16 C 0.030 3.970 17 H 0.161 0.839 18 C -0.120 4.120 19 C 0.088 3.912 20 C -0.008 4.008 21 C -0.076 4.076 22 C -0.060 4.060 23 C -0.073 4.073 24 C -0.067 4.067 25 C -0.038 4.038 26 N 0.019 4.981 27 O -0.168 6.168 28 O -0.155 6.155 29 N -0.276 5.276 30 O -0.188 6.188 31 H 0.027 0.973 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.267 0.733 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.124 0.876 39 H 0.144 0.856 40 H 0.167 0.833 41 H 0.193 0.807 42 H 0.200 0.800 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.776 3.591 6.543 14.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.151 3.849 3 H 0.073 0.927 4 C -0.577 4.577 5 H 0.069 0.931 6 C -0.161 4.161 7 N -0.539 5.539 8 Si 0.772 3.228 9 H -0.188 1.188 10 H -0.215 1.215 11 H -0.207 1.207 12 N -0.318 5.318 13 C -0.046 4.046 14 C 0.274 3.726 15 O -0.464 6.464 16 C -0.032 4.032 17 H 0.178 0.822 18 C -0.159 4.159 19 C -0.102 4.102 20 C -0.010 4.010 21 C -0.096 4.096 22 C -0.077 4.077 23 C -0.092 4.092 24 C -0.086 4.086 25 C -0.121 4.121 26 N 0.540 4.460 27 O -0.383 6.383 28 O -0.376 6.376 29 N -0.017 5.017 30 O -0.206 6.206 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.142 0.858 39 H 0.162 0.838 40 H 0.184 0.816 41 H 0.210 0.790 42 H 0.217 0.783 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 13.246 3.546 5.718 14.857 hybrid contribution -0.929 -0.758 0.448 1.280 sum 12.317 2.789 6.166 14.054 Atomic orbital electron populations 1.22038 0.97468 1.00183 1.00865 1.19150 0.92028 0.93201 0.80548 0.92688 1.21347 1.32443 1.13261 0.90690 0.93117 1.25353 0.94700 0.95310 1.00732 1.69926 1.36094 1.23203 1.24691 0.85746 0.78744 0.78835 0.79470 1.18753 1.21485 1.20726 1.48290 1.48119 1.12579 1.22787 1.21451 1.01073 0.81430 1.00623 1.21038 0.79249 0.89829 0.82459 1.90666 1.52576 1.69590 1.33560 1.23727 0.98901 0.93231 0.87328 0.82226 1.23016 0.85992 1.08354 0.98563 1.24708 0.96548 0.96808 0.92130 1.17741 0.85839 1.02911 0.94499 1.21782 1.02552 0.96163 0.89148 1.22093 0.90112 0.91872 1.03664 1.21950 1.01679 0.94959 0.90614 1.21328 0.94753 0.95803 0.96684 1.21463 0.97829 1.15078 0.77728 1.43951 0.98648 0.98752 1.04613 1.94713 1.34516 1.39956 1.69067 1.94432 1.36567 1.35365 1.71214 1.78758 0.97678 1.11455 1.13806 1.91262 1.10416 1.80663 1.38214 0.95408 0.94508 0.90066 0.92297 0.93620 0.89745 0.92312 0.85824 0.83832 0.81586 0.78964 0.78324 0.81577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.93 8.95 71.98 0.64 -5.29 16 2 C 0.25 10.35 1.74 44.24 0.08 10.43 16 3 H 0.06 2.24 4.75 -2.39 -0.01 2.23 16 4 C -0.54 -23.91 7.91 25.60 0.20 -23.70 16 5 H 0.05 2.35 7.65 -2.91 -0.02 2.33 16 6 C 0.04 1.80 5.30 84.65 0.45 2.25 16 7 N -0.90 -41.06 11.32 21.45 0.24 -40.82 16 8 Si 0.95 35.52 29.54 68.60 2.03 37.54 16 9 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 10 H -0.29 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 12 N -0.59 -24.08 2.75 -826.80 -2.28 -26.36 16 13 C 0.10 3.67 9.64 127.77 1.23 4.90 16 14 C 0.49 21.38 7.05 87.66 0.62 21.99 16 15 O -0.58 -30.07 16.21 14.98 0.24 -29.82 16 16 C 0.03 1.14 3.20 30.44 0.10 1.24 16 17 H 0.16 5.26 7.72 -2.39 -0.02 5.24 16 18 C -0.12 -3.94 4.48 30.75 0.14 -3.80 16 19 C 0.09 3.10 6.94 45.76 0.32 3.42 16 20 C -0.01 -0.21 5.87 -20.13 -0.12 -0.33 16 21 C -0.08 -1.41 9.61 22.54 0.22 -1.19 16 22 C -0.06 -0.60 10.03 22.23 0.22 -0.37 16 23 C -0.07 -0.63 10.04 22.33 0.22 -0.41 16 24 C -0.07 -1.13 9.77 22.23 0.22 -0.91 16 25 C -0.04 -1.07 6.37 36.64 0.23 -0.83 16 26 N 0.02 0.70 3.82 -45.84 -0.18 0.53 16 27 O -0.17 -7.45 15.71 18.88 0.30 -7.16 16 28 O -0.16 -5.52 19.10 18.89 0.36 -5.16 16 29 N -0.28 -11.76 8.62 -42.23 -0.36 -12.12 16 30 O -0.19 -8.22 11.82 -20.29 -0.24 -8.46 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 1.44 6.66 -2.39 -0.02 1.43 16 33 H 0.08 3.57 6.07 -2.39 -0.01 3.56 16 34 H 0.27 11.74 8.31 -92.71 -0.77 10.97 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 2.93 6.43 -2.39 -0.02 2.92 16 37 H 0.06 2.21 7.49 -2.38 -0.02 2.19 16 38 H 0.12 4.29 6.32 -2.39 -0.02 4.27 16 39 H 0.14 3.80 8.14 -2.38 -0.02 3.78 16 40 H 0.17 2.80 7.51 -2.91 -0.02 2.78 16 41 H 0.19 0.39 8.06 -2.91 -0.02 0.36 16 42 H 0.20 -0.13 8.06 -2.91 -0.02 -0.15 16 43 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -72.62 364.62 5.95 -66.66 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 1.07 Total: 17.77 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 4.77 Total: 7.39 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -2.57 Total: -78.77 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: 0.66 Total: -50.60 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.54 kcal Total: -72.62 5.95 -66.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183021930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.195 kcal (2) G-P(sol) polarization free energy of solvation -72.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds