Wall clock time and date at job start Wed Apr 1 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.56672 * 2 1 4 4 C 1.50436 * 109.56844 * 120.23029 * 2 1 3 5 5 O 1.21283 * 118.49063 * 287.13896 * 4 2 1 6 6 N 1.33378 * 123.02386 * 107.11534 * 4 2 1 7 7 C 1.45657 * 124.58752 * 4.32186 * 6 4 2 8 8 C 1.52984 * 110.76952 * 338.10160 * 7 6 4 9 9 N 1.47037 * 109.57086 * 239.64216 * 2 1 3 10 10 C 1.34775 * 121.35846 * 102.89246 * 9 2 1 11 11 O 1.21360 * 120.00791 * 173.14679 * 10 9 2 12 12 C 1.49356 * 119.99623 * 353.14898 * 10 9 2 13 13 O 1.21375 * 120.00194 * 353.94953 * 12 10 9 14 14 N 1.34779 * 120.00109 * 173.94837 * 12 10 9 15 15 C 1.39720 * 120.00250 * 183.52521 * 14 12 10 16 16 C 1.39018 * 120.04615 * 144.34832 * 15 14 12 17 17 C 1.38136 * 120.06514 * 179.97438 * 16 15 14 18 18 C 1.38180 * 120.14160 * 0.02562 * 17 16 15 19 19 C 1.38915 * 120.08628 * 359.97438 * 18 17 16 20 20 O 1.35748 * 120.03427 * 180.02562 * 19 18 17 21 21 C 1.34837 * 116.99869 * 7.37533 * 20 19 18 22 22 H 1.08000 * 120.00101 * 6.16638 * 21 20 19 23 23 C 1.38656 * 119.99911 * 186.16777 * 21 20 19 24 24 N 1.31555 * 119.99824 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99537 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47545 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.46979 * 120.00488 * 25 23 21 28 28 H 1.48509 * 109.47123 * 239.99626 * 25 23 21 29 29 C 1.38760 * 119.93633 * 359.70506 * 19 18 17 30 30 H 1.08997 * 109.47195 * 299.76692 * 1 2 3 31 31 H 1.09004 * 109.46894 * 179.76872 * 1 2 3 32 32 H 1.08996 * 109.46956 * 59.76824 * 1 2 3 33 33 H 0.97005 * 117.71124 * 184.29609 * 6 4 2 34 34 H 1.08997 * 109.21128 * 98.43000 * 7 6 4 35 35 H 1.08991 * 109.21444 * 217.80671 * 7 6 4 36 36 H 1.09004 * 109.71799 * 166.40302 * 8 7 6 37 37 H 1.08997 * 109.72132 * 287.00409 * 8 7 6 38 38 H 0.97001 * 119.99453 * 3.52418 * 14 12 10 39 39 H 1.08010 * 119.96471 * 0.02562 * 16 15 14 40 40 H 1.08005 * 119.93077 * 180.02562 * 17 16 15 41 41 H 1.08007 * 119.95205 * 180.02562 * 18 17 16 42 42 H 0.97002 * 119.99982 * 180.02562 * 24 23 21 43 43 H 1.07994 * 120.07847 * 180.31972 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 6 2.0339 -0.7137 1.2247 5 8 1.9316 -0.1610 2.2995 6 7 2.5874 -1.9264 1.1831 7 6 2.8569 -2.6709 -0.0395 8 6 1.9732 -2.1720 -1.1843 9 7 2.0225 -0.7002 -1.1955 10 6 2.4994 -0.0227 -2.2585 11 8 3.0137 -0.6225 -3.1796 12 6 2.3951 1.4666 -2.3028 13 8 1.7847 2.0583 -1.4364 14 7 2.9786 2.1535 -3.3048 15 6 2.9442 3.5503 -3.3071 16 6 4.0311 4.2726 -3.7860 17 6 3.9972 5.6536 -3.7889 18 6 2.8839 6.3213 -3.3156 19 6 1.7944 5.6056 -2.8357 20 8 0.7010 6.2627 -2.3715 21 6 0.6713 7.5997 -2.5437 22 1 1.4445 8.0873 -3.1189 23 6 -0.3517 8.3485 -1.9822 24 7 -1.2931 7.7545 -1.2811 25 14 -0.3930 10.2006 -2.2215 26 1 0.7712 10.6198 -3.0424 27 1 -1.6504 10.5824 -2.9132 28 1 -0.3326 10.8721 -0.8982 29 6 1.8220 4.2183 -2.8374 30 1 -0.3633 0.5102 0.8920 31 1 -0.3633 -1.0277 -0.0041 32 1 -0.3633 0.5174 -0.8879 33 1 2.8278 -2.3417 2.0262 34 1 3.9043 -2.5440 -0.3132 35 1 2.6568 -3.7283 0.1329 36 1 2.3459 -2.5598 -2.1324 37 1 0.9470 -2.5050 -1.0288 38 1 3.4226 1.6781 -4.0244 39 1 4.9026 3.7535 -4.1570 40 1 4.8428 6.2126 -4.1619 41 1 2.8605 7.4011 -3.3197 42 1 -2.0091 8.2783 -0.8887 43 1 0.9742 3.6596 -2.4695 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275804510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:35:28 Heat of formation + Delta-G solvation = -70.995562 kcal Electronic energy + Delta-G solvation = -30377.471947 eV Core-core repulsion = 26003.880380 eV Total energy + Delta-G solvation = -4373.591568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57779 -40.29543 -39.22225 -38.43895 -37.00168 -36.62588 -35.10833 -34.09685 -32.28044 -31.53697 -29.84811 -29.42689 -28.64876 -25.97663 -25.30551 -24.52830 -23.70248 -22.08184 -21.35964 -20.47527 -19.42620 -18.51196 -18.19586 -17.74430 -17.18823 -16.73769 -16.55702 -16.31872 -15.82131 -15.51677 -15.16144 -15.03604 -14.68911 -14.54721 -14.25282 -14.10874 -13.88510 -13.59147 -13.48877 -13.06927 -12.92762 -12.64823 -12.59170 -12.39765 -12.18807 -12.02330 -11.75695 -11.60964 -11.31411 -11.16261 -11.02441 -10.86160 -10.50457 -10.44396 -9.95074 -9.61315 -9.53983 -9.23329 -9.16538 -8.84741 -7.84369 -7.26369 -6.45106 -4.04363 1.07628 1.86036 2.12918 2.27674 2.30737 2.80450 3.04304 3.12790 3.14064 3.16417 3.20035 3.94185 4.05007 4.09761 4.23613 4.51595 4.57960 4.70078 4.86327 5.01457 5.09576 5.11526 5.24490 5.25694 5.43922 5.54426 5.57385 5.74631 5.80902 6.00315 6.04254 6.12797 6.27208 6.37013 6.47603 6.56751 6.69562 6.88004 6.93015 7.01905 7.20257 7.28807 7.39978 7.52610 7.65676 7.84141 7.96108 7.99265 8.99741 9.69409 10.72510 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014252 B = 0.002744 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.160590 B =10200.490886 C =11540.075465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.103 3.897 3 H 0.168 0.832 4 C 0.516 3.484 5 O -0.535 6.535 6 N -0.722 5.722 7 C 0.098 3.902 8 C 0.092 3.908 9 N -0.588 5.588 10 C 0.522 3.478 11 O -0.515 6.515 12 C 0.498 3.502 13 O -0.480 6.480 14 N -0.632 5.632 15 C 0.164 3.836 16 C -0.228 4.228 17 C -0.058 4.058 18 C -0.239 4.239 19 C 0.166 3.834 20 O -0.171 6.171 21 C -0.392 4.392 22 H 0.093 0.907 23 C 0.040 3.960 24 N -0.858 5.858 25 Si 0.941 3.059 26 H -0.266 1.266 27 H -0.276 1.276 28 H -0.276 1.276 29 C -0.182 4.182 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.400 0.600 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.418 0.582 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.270 0.730 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.034 -20.586 -1.500 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.002 4.002 3 H 0.184 0.816 4 C 0.302 3.698 5 O -0.411 6.411 6 N -0.376 5.376 7 C -0.027 4.027 8 C -0.031 4.031 9 N -0.325 5.325 10 C 0.305 3.695 11 O -0.390 6.390 12 C 0.280 3.720 13 O -0.355 6.355 14 N -0.278 5.278 15 C 0.072 3.928 16 C -0.249 4.249 17 C -0.077 4.077 18 C -0.258 4.258 19 C 0.111 3.889 20 O -0.074 6.074 21 C -0.468 4.468 22 H 0.111 0.889 23 C -0.165 4.165 24 N -0.492 5.492 25 Si 0.766 3.234 26 H -0.191 1.191 27 H -0.201 1.201 28 H -0.201 1.201 29 C -0.203 4.203 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.236 0.764 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.134 0.866 37 H 0.106 0.894 38 H 0.255 0.745 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.147 0.853 42 H 0.080 0.920 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.331 -20.117 -0.778 21.426 hybrid contribution 0.396 0.346 -0.167 0.552 sum 7.727 -19.772 -0.944 21.249 Atomic orbital electron populations 1.21940 0.91213 1.02295 1.04986 1.22444 0.97768 1.00331 0.79704 0.81589 1.20405 0.77077 0.81116 0.91207 1.90819 1.56076 1.64384 1.29776 1.45429 1.63583 1.18305 1.10242 1.21733 1.00189 0.96395 0.84423 1.22102 1.01237 0.79120 1.00603 1.48130 1.61355 1.06872 1.16095 1.20083 0.78599 0.88406 0.82376 1.90758 1.42062 1.69996 1.36164 1.20021 0.81188 0.87884 0.82938 1.90726 1.38790 1.69531 1.36418 1.42992 1.54384 1.05731 1.24676 1.17156 0.94352 0.79921 1.01387 1.20297 0.97736 0.94160 1.12687 1.20524 0.96979 0.93103 0.97091 1.21242 0.94938 1.00858 1.08799 1.19111 0.87123 0.91156 0.91532 1.84013 1.33574 1.21894 1.67945 1.21384 1.12129 0.79365 1.33909 0.88948 1.25313 0.95087 1.00421 0.95698 1.70057 1.11622 1.36292 1.31221 0.85644 0.78684 0.80626 0.78446 1.19065 1.20134 1.20119 1.20117 0.98748 0.91971 1.09486 0.89730 0.92558 0.90194 0.76412 0.90950 0.88881 0.86603 0.89420 0.74484 0.87086 0.86798 0.85291 0.91993 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.26 37.16 0.34 -1.29 16 2 C 0.10 1.25 2.44 -68.92 -0.17 1.08 16 3 H 0.17 2.50 4.92 -52.26 -0.26 2.24 16 4 C 0.52 6.27 7.10 -11.73 -0.08 6.19 16 5 O -0.54 -8.65 17.80 5.55 0.10 -8.55 16 6 N -0.72 -5.81 5.42 -61.32 -0.33 -6.15 16 7 C 0.10 0.50 7.34 -4.50 -0.03 0.47 16 8 C 0.09 0.60 6.39 -3.63 -0.02 0.58 16 9 N -0.59 -6.13 2.62 -167.10 -0.44 -6.57 16 10 C 0.52 6.49 7.77 -11.63 -0.09 6.40 16 11 O -0.51 -6.64 15.99 5.49 0.09 -6.55 16 12 C 0.50 7.42 7.57 -11.63 -0.09 7.33 16 13 O -0.48 -8.44 10.63 5.48 0.06 -8.39 16 14 N -0.63 -9.20 5.32 -10.31 -0.05 -9.25 16 15 C 0.16 2.95 6.27 -83.77 -0.53 2.42 16 16 C -0.23 -3.77 9.97 -39.33 -0.39 -4.16 16 17 C -0.06 -1.02 10.03 -39.64 -0.40 -1.42 16 18 C -0.24 -5.08 9.12 -39.35 -0.36 -5.44 16 19 C 0.17 4.02 6.64 -39.14 -0.26 3.76 16 20 O -0.17 -4.92 9.76 0.04 0.00 -4.92 16 21 C -0.39 -10.89 9.42 30.89 0.29 -10.60 16 22 H 0.09 2.36 5.35 -52.49 -0.28 2.08 16 23 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 24 N -0.86 -25.22 13.67 55.48 0.76 -24.47 16 25 Si 0.94 20.44 29.55 -169.99 -5.02 15.42 16 26 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 27 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 28 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 29 C -0.18 -3.97 8.62 -39.19 -0.34 -4.30 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.50 7.49 -51.93 -0.39 0.11 16 32 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.40 2.68 8.80 -40.82 -0.36 2.32 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.12 0.71 7.09 -51.93 -0.37 0.34 16 37 H 0.09 0.46 7.50 -51.93 -0.39 0.07 16 38 H 0.42 4.92 8.30 -40.82 -0.34 4.59 16 39 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 40 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 41 H 0.13 2.74 5.75 -52.48 -0.30 2.43 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 43 H 0.13 3.03 6.32 -52.49 -0.33 2.70 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -34.80 363.94 -6.26 -41.06 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -4.68 Total: 10.88 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -2.22 Total: 2.00 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.07 Total: -46.44 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: 0.25 Total: -28.41 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.80 -6.26 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275804510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.932 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds