Wall clock time and date at job start Wed Apr 1 2020 06:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.56672 * 2 1 4 4 C 1.50436 * 109.56844 * 120.23029 * 2 1 3 5 5 O 1.21283 * 118.49063 * 287.13896 * 4 2 1 6 6 N 1.33378 * 123.02386 * 107.11534 * 4 2 1 7 7 C 1.45657 * 124.58752 * 4.32186 * 6 4 2 8 8 C 1.52984 * 110.76952 * 338.10160 * 7 6 4 9 9 N 1.47037 * 109.57086 * 239.64216 * 2 1 3 10 10 C 1.34775 * 121.35846 * 102.89246 * 9 2 1 11 11 O 1.21360 * 120.00791 * 173.14679 * 10 9 2 12 12 C 1.49356 * 119.99623 * 353.14898 * 10 9 2 13 13 O 1.21375 * 120.00194 * 353.94953 * 12 10 9 14 14 N 1.34779 * 120.00109 * 173.94837 * 12 10 9 15 15 C 1.39720 * 120.00250 * 183.52521 * 14 12 10 16 16 C 1.39018 * 120.04615 * 144.34832 * 15 14 12 17 17 C 1.38136 * 120.06514 * 179.97438 * 16 15 14 18 18 C 1.38180 * 120.14160 * 0.02562 * 17 16 15 19 19 C 1.38915 * 120.08628 * 359.97438 * 18 17 16 20 20 O 1.35748 * 120.03427 * 180.02562 * 19 18 17 21 21 C 1.34837 * 116.99869 * 7.37533 * 20 19 18 22 22 H 1.08000 * 120.00101 * 6.16638 * 21 20 19 23 23 C 1.38656 * 119.99911 * 186.16777 * 21 20 19 24 24 N 1.31555 * 119.99824 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99537 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47545 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.46979 * 120.00488 * 25 23 21 28 28 H 1.48509 * 109.47123 * 239.99626 * 25 23 21 29 29 C 1.38760 * 119.93633 * 359.70506 * 19 18 17 30 30 H 1.08997 * 109.47195 * 299.76692 * 1 2 3 31 31 H 1.09004 * 109.46894 * 179.76872 * 1 2 3 32 32 H 1.08996 * 109.46956 * 59.76824 * 1 2 3 33 33 H 0.97005 * 117.71124 * 184.29609 * 6 4 2 34 34 H 1.08997 * 109.21128 * 98.43000 * 7 6 4 35 35 H 1.08991 * 109.21444 * 217.80671 * 7 6 4 36 36 H 1.09004 * 109.71799 * 166.40302 * 8 7 6 37 37 H 1.08997 * 109.72132 * 287.00409 * 8 7 6 38 38 H 0.97001 * 119.99453 * 3.52418 * 14 12 10 39 39 H 1.08010 * 119.96471 * 0.02562 * 16 15 14 40 40 H 1.08005 * 119.93077 * 180.02562 * 17 16 15 41 41 H 1.08007 * 119.95205 * 180.02562 * 18 17 16 42 42 H 0.97002 * 119.99982 * 180.02562 * 24 23 21 43 43 H 1.07994 * 120.07847 * 180.31972 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 6 2.0339 -0.7137 1.2247 5 8 1.9316 -0.1610 2.2995 6 7 2.5874 -1.9264 1.1831 7 6 2.8569 -2.6709 -0.0395 8 6 1.9732 -2.1720 -1.1843 9 7 2.0225 -0.7002 -1.1955 10 6 2.4994 -0.0227 -2.2585 11 8 3.0137 -0.6225 -3.1796 12 6 2.3951 1.4666 -2.3028 13 8 1.7847 2.0583 -1.4364 14 7 2.9786 2.1535 -3.3048 15 6 2.9442 3.5503 -3.3071 16 6 4.0311 4.2726 -3.7860 17 6 3.9972 5.6536 -3.7889 18 6 2.8839 6.3213 -3.3156 19 6 1.7944 5.6056 -2.8357 20 8 0.7010 6.2627 -2.3715 21 6 0.6713 7.5997 -2.5437 22 1 1.4445 8.0873 -3.1189 23 6 -0.3517 8.3485 -1.9822 24 7 -1.2931 7.7545 -1.2811 25 14 -0.3930 10.2006 -2.2215 26 1 0.7712 10.6198 -3.0424 27 1 -1.6504 10.5824 -2.9132 28 1 -0.3326 10.8721 -0.8982 29 6 1.8220 4.2183 -2.8374 30 1 -0.3633 0.5102 0.8920 31 1 -0.3633 -1.0277 -0.0041 32 1 -0.3633 0.5174 -0.8879 33 1 2.8278 -2.3417 2.0262 34 1 3.9043 -2.5440 -0.3132 35 1 2.6568 -3.7283 0.1329 36 1 2.3459 -2.5598 -2.1324 37 1 0.9470 -2.5050 -1.0288 38 1 3.4226 1.6781 -4.0244 39 1 4.9026 3.7535 -4.1570 40 1 4.8428 6.2126 -4.1619 41 1 2.8605 7.4011 -3.3197 42 1 -2.0091 8.2783 -0.8887 43 1 0.9742 3.6596 -2.4695 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275804510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:35:27 Heat of formation + Delta-G solvation = -99.138023 kcal Electronic energy + Delta-G solvation = -30378.692296 eV Core-core repulsion = 26003.880380 eV Total energy + Delta-G solvation = -4374.811916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.62640 -41.44697 -40.61342 -39.81354 -38.37707 -37.79287 -36.10145 -35.35515 -34.25696 -32.42029 -31.34622 -30.49400 -30.03700 -27.41783 -26.84625 -25.50196 -24.68428 -23.50702 -22.87696 -21.64423 -20.48108 -19.97274 -19.33615 -18.90363 -18.66915 -17.75574 -17.62842 -17.34808 -16.91083 -16.78034 -16.73707 -16.24398 -16.04809 -15.85809 -15.54584 -15.47417 -15.29237 -15.04357 -14.48359 -14.32456 -14.27474 -13.82407 -13.61801 -13.44867 -13.31896 -13.27671 -13.17194 -12.83832 -12.68433 -12.65963 -12.39960 -12.32274 -12.08364 -11.60710 -11.41002 -11.30205 -10.77997 -10.51721 -10.28935 -10.04802 -9.42022 -8.94490 -8.46101 -6.15309 -0.11280 0.55720 0.68668 0.96265 1.33910 1.35914 1.44626 1.54930 1.85883 1.96316 2.15156 2.19684 2.80108 2.95755 3.16225 3.28655 3.53429 3.66864 3.90589 4.01628 4.09401 4.11491 4.30964 4.35893 4.38333 4.51782 4.55490 4.64816 4.69659 4.71164 4.80992 4.92428 4.97696 5.07491 5.11078 5.29158 5.35227 5.59444 5.62213 5.69494 5.71728 5.95791 6.03155 6.07791 6.13712 6.44886 6.75353 6.97908 6.98561 7.79195 8.77504 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014252 B = 0.002744 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.160590 B =10200.490886 C =11540.075465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.105 3.895 3 H 0.134 0.866 4 C 0.517 3.483 5 O -0.586 6.586 6 N -0.705 5.705 7 C 0.096 3.904 8 C 0.083 3.917 9 N -0.579 5.579 10 C 0.532 3.468 11 O -0.515 6.515 12 C 0.492 3.508 13 O -0.512 6.512 14 N -0.623 5.623 15 C 0.173 3.827 16 C -0.197 4.197 17 C -0.048 4.048 18 C -0.248 4.248 19 C 0.127 3.873 20 O -0.232 6.232 21 C -0.411 4.411 22 H 0.106 0.894 23 C -0.026 4.026 24 N -0.921 5.921 25 Si 1.021 2.979 26 H -0.247 1.247 27 H -0.269 1.269 28 H -0.271 1.271 29 C -0.203 4.203 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.410 0.590 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.435 0.565 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.125 0.875 42 H 0.272 0.728 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.304 -22.983 -3.395 25.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.002 4.002 3 H 0.151 0.849 4 C 0.303 3.697 5 O -0.466 6.466 6 N -0.357 5.357 7 C -0.027 4.027 8 C -0.037 4.037 9 N -0.315 5.315 10 C 0.314 3.686 11 O -0.391 6.391 12 C 0.274 3.726 13 O -0.388 6.388 14 N -0.271 5.271 15 C 0.080 3.920 16 C -0.218 4.218 17 C -0.067 4.067 18 C -0.268 4.268 19 C 0.076 3.924 20 O -0.138 6.138 21 C -0.487 4.487 22 H 0.123 0.877 23 C -0.223 4.223 24 N -0.560 5.560 25 Si 0.840 3.160 26 H -0.170 1.170 27 H -0.194 1.194 28 H -0.196 1.196 29 C -0.225 4.225 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.247 0.753 34 H 0.097 0.903 35 H 0.157 0.843 36 H 0.147 0.853 37 H 0.126 0.874 38 H 0.276 0.724 39 H 0.180 0.820 40 H 0.179 0.821 41 H 0.142 0.858 42 H 0.081 0.919 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.681 -22.641 -2.732 25.182 hybrid contribution -0.364 0.723 0.321 0.871 sum 10.316 -21.918 -2.411 24.344 Atomic orbital electron populations 1.21871 0.90791 1.03731 1.03523 1.22128 0.98117 0.99175 0.80747 0.84873 1.20279 0.77234 0.82091 0.90094 1.90798 1.58516 1.66015 1.31233 1.45377 1.61388 1.16838 1.12094 1.22044 1.00185 0.98156 0.82348 1.22539 1.03091 0.76035 1.02007 1.48142 1.60115 1.08569 1.14643 1.19458 0.79256 0.86862 0.83055 1.90763 1.42597 1.69464 1.36254 1.20691 0.80194 0.89389 0.82309 1.90764 1.39799 1.70663 1.37544 1.42919 1.54482 1.04371 1.25284 1.17264 0.93367 0.81642 0.99777 1.20912 0.97942 0.93957 1.08962 1.21036 0.96645 0.93844 0.95153 1.21395 0.95446 1.00840 1.09071 1.19637 0.87658 0.92185 0.92907 1.83974 1.36392 1.22516 1.70954 1.21904 1.12781 0.79646 1.34389 0.87667 1.26660 0.94356 1.06093 0.95174 1.70219 1.13176 1.38598 1.33958 0.84498 0.79430 0.73318 0.78744 1.16997 1.19387 1.19581 1.20148 0.99893 0.91389 1.11046 0.91313 0.89565 0.91590 0.75256 0.90281 0.84285 0.85315 0.87400 0.72440 0.81969 0.82127 0.85774 0.91905 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.26 71.98 0.67 -2.61 16 2 C 0.10 2.59 2.44 44.06 0.11 2.69 16 3 H 0.13 4.32 4.92 -7.68 -0.04 4.28 16 4 C 0.52 12.41 7.10 87.79 0.62 13.04 16 5 O -0.59 -19.63 17.80 -3.04 -0.05 -19.68 16 6 N -0.71 -9.65 5.42 -467.10 -2.53 -12.18 16 7 C 0.10 0.59 7.34 86.53 0.63 1.22 16 8 C 0.08 0.80 6.39 86.23 0.55 1.35 16 9 N -0.58 -11.21 2.62 -800.94 -2.10 -13.31 16 10 C 0.53 12.45 7.77 87.24 0.68 13.13 16 11 O -0.51 -11.88 15.99 -3.28 -0.05 -11.93 16 12 C 0.49 14.67 7.57 87.24 0.66 15.33 16 13 O -0.51 -19.18 10.63 -3.32 -0.04 -19.21 16 14 N -0.62 -17.24 5.32 -304.88 -1.62 -18.86 16 15 C 0.17 6.03 6.27 38.20 0.24 6.27 16 16 C -0.20 -5.73 9.97 22.43 0.22 -5.51 16 17 C -0.05 -1.54 10.03 22.23 0.22 -1.31 16 18 C -0.25 -10.59 9.12 22.42 0.20 -10.38 16 19 C 0.13 6.53 6.64 22.56 0.15 6.68 16 20 O -0.23 -14.44 9.76 -22.78 -0.22 -14.66 16 21 C -0.41 -24.28 9.42 67.92 0.64 -23.64 16 22 H 0.11 5.61 5.35 -2.91 -0.02 5.60 16 23 C -0.03 -1.48 5.49 84.83 0.47 -1.01 16 24 N -0.92 -58.15 13.67 21.61 0.30 -57.85 16 25 Si 1.02 43.44 29.55 68.60 2.03 45.47 16 26 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 29 C -0.20 -9.33 8.62 22.52 0.19 -9.14 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 1.43 7.49 -2.38 -0.02 1.41 16 32 H 0.07 1.70 8.07 -2.39 -0.02 1.68 16 33 H 0.41 4.47 8.80 -92.70 -0.82 3.66 16 34 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.14 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.13 1.02 7.09 -2.38 -0.02 1.01 16 37 H 0.11 0.68 7.50 -2.39 -0.02 0.66 16 38 H 0.43 8.95 8.30 -92.71 -0.77 8.19 16 39 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 41 H 0.12 5.34 5.75 -2.91 -0.02 5.32 16 42 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 43 H 0.11 5.43 6.32 -2.91 -0.02 5.41 16 Total: -1.00 -86.15 363.94 1.46 -84.69 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: -0.50 Total: 31.42 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 6.26 Total: 6.11 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -5.96 Total: -102.20 kcal Atomic # 8 Polarization: -65.12 SS G_CDS: -0.36 Total: -65.48 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -86.15 1.46 -84.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275804510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.452 kcal (2) G-P(sol) polarization free energy of solvation -86.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds