Wall clock time and date at job start Wed Apr 1 2020 06:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.53000 * 109.47266 * 164.99831 * 18 17 14 20 20 C 1.53002 * 109.47208 * 179.97438 * 19 18 17 21 21 N 1.46500 * 109.47163 * 179.97438 * 20 19 18 22 22 C 1.33876 * 122.76606 * 269.72027 * 21 20 19 23 23 O 1.21223 * 125.39462 * 359.96759 * 22 21 20 24 24 C 1.51315 * 109.20735 * 179.84633 * 22 21 20 25 25 C 1.54224 * 103.55629 * 0.37866 * 24 22 21 26 26 C 1.33881 * 122.75943 * 90.00320 * 21 20 19 27 27 O 1.21223 * 125.39710 * 359.97438 * 26 21 20 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 36 36 H 1.09001 * 109.46915 * 284.99450 * 18 17 14 37 37 H 1.08992 * 109.47300 * 44.99797 * 18 17 14 38 38 H 1.08996 * 109.47610 * 300.00094 * 19 18 17 39 39 H 1.09005 * 109.47130 * 59.99553 * 19 18 17 40 40 H 1.08990 * 109.47484 * 300.00428 * 20 19 18 41 41 H 1.09001 * 109.46836 * 60.00590 * 20 19 18 42 42 H 1.09002 * 110.79074 * 241.77429 * 24 22 21 43 43 H 1.08996 * 110.55213 * 118.87392 * 24 22 21 44 44 H 1.09000 * 110.60656 * 241.26982 * 25 24 22 45 45 H 1.08992 * 110.60869 * 118.30067 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 6.6577 -1.3310 -1.7337 20 6 7.2759 -2.7303 -1.7577 21 7 8.7333 -2.6222 -1.6549 22 6 9.5297 -2.5216 -2.7263 23 8 9.1568 -2.5084 -3.8796 24 6 10.9689 -2.4240 -2.2693 25 6 10.8658 -2.4962 -0.7322 26 6 9.3787 -2.6213 -0.4820 27 8 8.8548 -2.7068 0.6079 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 5.0733 0.6551 -1.5281 36 1 4.7540 -2.0247 -1.0019 37 1 4.8736 -1.9405 -2.7759 38 1 7.0395 -0.7502 -2.5733 39 1 6.9198 -0.8343 -0.7994 40 1 6.8941 -3.3108 -0.9180 41 1 7.0139 -3.2272 -2.6919 42 1 11.4102 -1.4770 -2.5801 43 1 11.5504 -3.2616 -2.6545 44 1 11.2557 -1.5851 -0.2783 45 1 11.3936 -3.3711 -0.3529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283068036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:26 Heat of formation + Delta-G solvation = -170.514174 kcal Electronic energy + Delta-G solvation = -29371.205444 eV Core-core repulsion = 25128.742377 eV Total energy + Delta-G solvation = -4242.463067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.83424 -39.63801 -38.40009 -37.93002 -37.53533 -36.93336 -36.78046 -34.63911 -34.51597 -31.48375 -30.93784 -27.26558 -27.07763 -27.02687 -26.51480 -23.27406 -23.22603 -22.61053 -20.65246 -20.19429 -18.81193 -18.50328 -18.34657 -18.22713 -17.78218 -17.49682 -17.28941 -16.71792 -16.22214 -16.01111 -15.59201 -15.27707 -15.13964 -14.92205 -14.89356 -14.82204 -14.49071 -14.05568 -13.85222 -13.71423 -13.57802 -13.45460 -13.24355 -13.18289 -13.03312 -12.99125 -12.78745 -12.70230 -12.64134 -12.24287 -12.15901 -12.13083 -12.07387 -11.88200 -11.59638 -11.21273 -11.06407 -10.88483 -10.50986 -10.47797 -9.68257 -8.09954 -6.24657 -0.32162 0.51147 1.45505 1.46479 1.51610 1.53446 1.72830 1.99786 2.44768 2.59486 3.18600 3.23977 3.29620 3.40053 3.65570 3.76583 3.82232 3.85898 4.08312 4.20725 4.28604 4.35489 4.43708 4.51707 4.70407 4.77964 4.79342 4.79718 4.92110 4.92735 4.95624 4.96905 5.00510 5.11237 5.14812 5.26325 5.60409 5.65984 5.83647 5.84317 6.02422 6.13715 6.28315 6.34084 6.75747 6.84561 7.45046 8.94548 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010957 B = 0.003356 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.752522 B = 8340.737500 C =10256.239099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.530 4.530 5 H 0.070 0.930 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.957 3.043 9 H -0.288 1.288 10 H -0.268 1.268 11 H -0.275 1.275 12 N -0.996 5.996 13 C 0.097 3.903 14 S 2.800 3.200 15 O -1.005 7.005 16 O -1.018 7.018 17 N -1.120 6.120 18 C 0.120 3.880 19 C -0.129 4.129 20 C 0.095 3.905 21 N -0.579 5.579 22 C 0.519 3.481 23 O -0.522 6.522 24 C -0.141 4.141 25 C -0.142 4.142 26 C 0.516 3.484 27 O -0.524 6.524 28 H 0.018 0.982 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.263 0.737 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.419 0.581 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.142 0.858 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.010 -9.642 -7.602 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.569 4.569 5 H 0.088 0.912 6 C -0.182 4.182 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.214 1.214 10 H -0.193 1.193 11 H -0.201 1.201 12 N -0.838 5.838 13 C -0.048 4.048 14 S 2.808 3.192 15 O -0.989 6.989 16 O -1.003 7.003 17 N -0.882 5.882 18 C -0.007 4.007 19 C -0.168 4.168 20 C -0.028 4.028 21 N -0.322 5.322 22 C 0.311 3.689 23 O -0.396 6.396 24 C -0.180 4.180 25 C -0.181 4.181 26 C 0.308 3.692 27 O -0.398 6.398 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.254 0.746 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.162 0.838 43 H 0.165 0.835 44 H 0.160 0.840 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 21.008 -9.254 -8.347 24.426 hybrid contribution -0.178 0.131 1.429 1.446 sum 20.830 -9.123 -6.918 23.769 Atomic orbital electron populations 1.21941 0.97862 1.00104 0.99928 1.18383 0.91968 0.91373 0.81363 0.95799 1.21609 1.31542 1.13144 0.90620 0.91173 1.25667 0.95197 0.95596 1.01781 1.70011 1.37418 1.23959 1.24361 0.85637 0.78528 0.78884 0.78695 1.21414 1.19256 1.20077 1.57588 1.65143 1.22545 1.38525 1.21435 1.00602 0.80452 1.02309 1.01118 0.73017 0.72004 0.73018 1.93525 1.86520 1.76301 1.42525 1.93540 1.84567 1.34869 1.87292 1.55709 1.31104 1.16183 1.85228 1.21252 0.93799 0.82754 1.02853 1.21935 0.93971 0.97615 1.03324 1.21704 0.77965 0.97707 1.05376 1.46994 1.09480 1.65365 1.10315 1.21741 0.91205 0.72374 0.83579 1.90787 1.81670 1.47417 1.19739 1.22593 0.91048 1.09511 0.94873 1.22601 0.89467 1.09335 0.96716 1.21808 0.92704 0.72501 0.82181 1.90816 1.75462 1.46995 1.26492 0.96250 0.93671 0.91200 0.92738 0.92981 0.90498 0.90379 0.74599 0.90837 0.89621 0.90577 0.91077 0.88393 0.87887 0.83834 0.83461 0.84012 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.72 8.97 71.98 0.65 -6.07 16 2 C 0.27 13.52 2.62 44.24 0.12 13.64 16 3 H 0.02 1.35 6.91 -2.39 -0.02 1.34 16 4 C -0.53 -27.04 7.99 25.60 0.20 -26.84 16 5 H 0.07 3.40 7.33 -2.91 -0.02 3.38 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.92 -51.51 11.32 21.45 0.24 -51.26 16 8 Si 0.96 41.99 29.54 68.60 2.03 44.02 16 9 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 N -1.00 -40.76 3.12 -520.45 -1.62 -42.38 16 13 C 0.10 3.29 9.28 127.77 1.19 4.47 16 14 S 2.80 109.56 6.09 -56.49 -0.34 109.22 16 15 O -1.01 -40.33 16.68 -128.00 -2.14 -42.46 16 16 O -1.02 -47.71 16.70 -128.00 -2.14 -49.85 16 17 N -1.12 -34.90 6.05 -187.50 -1.14 -36.04 16 18 C 0.12 3.07 6.25 86.38 0.54 3.61 16 19 C -0.13 -2.80 5.68 30.59 0.17 -2.63 16 20 C 0.09 1.82 5.56 86.38 0.48 2.30 16 21 N -0.58 -9.65 2.55 -756.67 -1.93 -11.58 16 22 C 0.52 7.65 8.08 87.99 0.71 8.36 16 23 O -0.52 -11.96 17.47 -2.85 -0.05 -12.01 16 24 C -0.14 -0.42 7.03 30.46 0.21 -0.21 16 25 C -0.14 -0.52 7.03 30.46 0.21 -0.31 16 26 C 0.52 8.24 8.08 87.99 0.71 8.95 16 27 O -0.52 -13.35 17.48 -2.86 -0.05 -13.40 16 28 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.04 2.01 7.67 -2.39 -0.02 1.99 16 30 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 31 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 2.13 7.79 -2.38 -0.02 2.12 16 34 H 0.08 2.67 7.02 -2.39 -0.02 2.65 16 35 H 0.42 11.98 8.65 -96.75 -0.84 11.14 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.09 2.05 7.75 -2.39 -0.02 2.03 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.10 1.90 7.83 -2.39 -0.02 1.88 16 41 H 0.10 1.85 7.82 -2.39 -0.02 1.83 16 42 H 0.14 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.15 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.14 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.15 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: -1.00 -79.00 386.63 -1.32 -80.32 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.18 Total: 18.81 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 5.64 Total: 6.63 kcal Atomic # 7 Polarization: -136.82 SS G_CDS: -4.45 Total: -141.26 kcal Atomic # 8 Polarization: -113.35 SS G_CDS: -4.37 Total: -117.73 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 109.56 SS G_CDS: -0.34 Total: 109.22 kcal Total: -79.00 -1.32 -80.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283068036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.193 kcal (2) G-P(sol) polarization free energy of solvation -79.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds