Wall clock time and date at job start Wed Apr 1 2020 06:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47169 * 2 1 4 4 C 1.50706 * 109.46626 * 240.00825 * 2 1 3 5 5 H 1.07999 * 119.99433 * 239.99768 * 4 2 1 6 6 C 1.37871 * 120.00236 * 59.99711 * 4 2 1 7 7 N 1.31509 * 120.00376 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99846 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47019 * 90.00103 * 8 6 4 10 10 H 1.48501 * 109.47000 * 210.00061 * 8 6 4 11 11 H 1.48501 * 109.47230 * 330.00284 * 8 6 4 12 12 N 1.46489 * 109.47367 * 120.00634 * 2 1 3 13 13 C 1.46504 * 120.00051 * 59.99646 * 12 2 1 14 14 S 1.65606 * 120.00129 * 239.99892 * 12 2 1 15 15 O 1.42105 * 106.40008 * 336.45751 * 14 12 2 16 16 O 1.42098 * 106.40370 * 203.53936 * 14 12 2 17 17 N 1.65595 * 107.22013 * 89.99663 * 14 12 2 18 18 C 1.46508 * 119.99876 * 65.00349 * 17 14 12 19 19 C 1.52991 * 109.47282 * 164.99994 * 18 17 14 20 20 C 1.52999 * 109.47330 * 179.97438 * 19 18 17 21 21 N 1.46501 * 109.47226 * 180.02562 * 20 19 18 22 22 C 1.33873 * 122.76039 * 269.71246 * 21 20 19 23 23 O 1.21224 * 125.39889 * 359.97206 * 22 21 20 24 24 C 1.51324 * 109.20594 * 179.84357 * 22 21 20 25 25 C 1.54232 * 103.55173 * 0.38423 * 24 22 21 26 26 C 1.33878 * 122.76318 * 89.99972 * 21 20 19 27 27 O 1.21228 * 125.39765 * 359.97438 * 26 21 20 28 28 H 1.09010 * 109.46956 * 299.99542 * 1 2 3 29 29 H 1.09001 * 109.47294 * 59.99252 * 1 2 3 30 30 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00587 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47095 * 270.00091 * 13 12 2 33 33 H 1.08991 * 109.46942 * 30.00504 * 13 12 2 34 34 H 1.09009 * 109.46796 * 150.00143 * 13 12 2 35 35 H 0.96997 * 120.00034 * 245.00377 * 17 14 12 36 36 H 1.09006 * 109.46715 * 285.00199 * 18 17 14 37 37 H 1.08993 * 109.46869 * 44.99478 * 18 17 14 38 38 H 1.09003 * 109.47593 * 300.00518 * 19 18 17 39 39 H 1.09006 * 109.47454 * 59.99767 * 19 18 17 40 40 H 1.09000 * 109.46984 * 299.99903 * 20 19 18 41 41 H 1.08991 * 109.46891 * 60.00054 * 20 19 18 42 42 H 1.08997 * 110.79712 * 241.77439 * 24 22 21 43 43 H 1.09001 * 110.54983 * 118.87297 * 24 22 21 44 44 H 1.09007 * 110.60170 * 241.25780 * 25 24 22 45 45 H 1.09002 * 110.60493 * 118.29884 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2307 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3222 -1.1192 -4.0081 9 1 1.3445 -2.1612 -4.4126 10 1 2.4870 -0.1397 -5.1121 11 1 3.6306 -1.7563 -3.7122 12 7 2.0184 -0.6907 1.1960 13 6 1.6644 -2.0933 1.4277 14 16 2.9705 0.1140 2.2861 15 8 3.5795 1.1828 1.5748 16 8 3.7119 -0.8791 2.9812 17 7 1.9609 0.8088 3.3998 18 6 1.1512 -0.0356 4.2817 19 6 0.6090 0.8070 5.4379 20 6 -0.2372 -0.0746 6.3585 21 7 -0.7568 0.7325 7.4653 22 6 -0.1008 0.8830 8.6225 23 8 0.9715 0.3857 8.8916 24 6 -0.9084 1.7748 9.5403 25 6 -2.1628 2.1090 8.7075 26 6 -1.9295 1.3756 7.4047 27 8 -2.6845 1.3714 6.4563 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7093 1.1621 -3.4843 32 1 0.7376 -2.1445 1.9991 33 1 1.5295 -2.5968 0.4706 34 1 2.4630 -2.5820 1.9861 35 1 1.9057 1.7748 3.4682 36 1 0.3190 -0.4570 3.7177 37 1 1.7672 -0.8427 4.6780 38 1 1.4411 1.2286 6.0018 39 1 -0.0070 1.6143 5.0415 40 1 -1.0694 -0.4956 5.7943 41 1 0.3785 -0.8819 6.7549 42 1 -0.3558 2.6825 9.7827 43 1 -1.1829 1.2398 10.4494 44 1 -2.2342 3.1831 8.5357 45 1 -3.0611 1.7380 9.2011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283068040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:31 Heat of formation + Delta-G solvation = -141.706591 kcal Electronic energy + Delta-G solvation = -29126.611939 eV Core-core repulsion = 24885.398062 eV Total energy + Delta-G solvation = -4241.213877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.26596 -38.95412 -36.86071 -36.53152 -36.16037 -35.98819 -35.21922 -33.97018 -32.56787 -30.70152 -29.08948 -26.64371 -25.74617 -25.46128 -25.15301 -22.80769 -22.31515 -20.78831 -19.91352 -18.75435 -17.75423 -17.45993 -17.14664 -16.88912 -16.80686 -16.38597 -15.78583 -15.36484 -15.13323 -14.85819 -14.62988 -14.46811 -14.34951 -14.24845 -13.43974 -13.33807 -13.27625 -13.15664 -12.87198 -12.61780 -12.09331 -12.01755 -11.91106 -11.81136 -11.52291 -11.44758 -11.33016 -11.28174 -11.21083 -10.94361 -10.90782 -10.80409 -10.45489 -10.44250 -10.21710 -10.14793 -10.05154 -9.34235 -9.24339 -8.44862 -7.97055 -6.06516 -4.13101 1.08344 1.21369 2.08411 2.27492 3.28936 3.35998 3.39960 3.49775 3.58959 3.72781 3.91154 4.10994 4.30432 4.40895 4.56547 4.59100 4.72070 4.91906 5.03384 5.04297 5.04382 5.09472 5.15006 5.25271 5.25391 5.43658 5.67433 5.74575 5.82345 6.05718 6.11525 6.36153 6.40845 6.67572 6.79867 6.85251 6.88699 7.04554 7.13885 7.34552 7.49844 7.64024 7.80330 8.06089 8.28482 8.88897 9.52535 10.99233 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.019749 B = 0.002484 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.452374 B =11270.347390 C =12041.031215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.988 5.988 13 C 0.095 3.905 14 S 2.780 3.220 15 O -0.974 6.974 16 O -0.997 6.997 17 N -1.133 6.133 18 C 0.127 3.873 19 C -0.141 4.141 20 C 0.098 3.902 21 N -0.574 5.574 22 C 0.524 3.476 23 O -0.478 6.478 24 C -0.157 4.157 25 C -0.157 4.157 26 C 0.523 3.477 27 O -0.475 6.475 28 H 0.010 0.990 29 H 0.092 0.908 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.412 0.588 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 1.738 24.546 25.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.831 5.831 13 C -0.052 4.052 14 S 2.789 3.211 15 O -0.958 6.958 16 O -0.980 6.980 17 N -0.892 5.892 18 C -0.001 4.001 19 C -0.180 4.180 20 C -0.024 4.024 21 N -0.317 5.317 22 C 0.313 3.687 23 O -0.349 6.349 24 C -0.197 4.197 25 C -0.197 4.197 26 C 0.312 3.688 27 O -0.346 6.346 28 H 0.029 0.971 29 H 0.110 0.890 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.244 0.756 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.227 1.405 23.998 25.102 hybrid contribution -0.248 -0.026 -0.922 0.955 sum -7.475 1.379 23.077 24.296 Atomic orbital electron populations 1.22108 0.98204 0.99729 1.00554 1.18729 0.91293 0.93012 0.80451 0.92391 1.21335 1.31582 1.13015 0.90060 0.91896 1.24908 0.94977 0.95005 0.99016 1.69857 1.36581 1.22647 1.23783 0.86493 0.79277 0.79273 0.82335 1.20663 1.21133 1.19835 1.57646 1.69888 1.19837 1.35732 1.21332 0.98654 0.82432 1.02736 1.01911 0.73613 0.73173 0.72428 1.93617 1.74350 1.55985 1.71825 1.93524 1.69215 1.60745 1.74510 1.56198 1.62547 1.17300 1.53134 1.21021 0.95180 0.93216 0.90686 1.22082 1.00136 0.99338 0.96481 1.21783 0.99718 0.93864 0.86999 1.46794 1.21452 1.46484 1.17000 1.20867 0.85104 0.80492 0.82250 1.90814 1.19476 1.47922 1.76663 1.22483 0.95974 1.01782 0.99480 1.22488 1.00262 1.03717 0.93251 1.20874 0.79843 0.78247 0.89828 1.90828 1.47474 1.59293 1.37001 0.97097 0.88979 0.94846 0.92700 0.94530 0.89797 0.91883 0.75579 0.91352 0.90303 0.90507 0.90443 0.88213 0.88262 0.86068 0.86152 0.86058 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.97 37.16 0.33 -3.00 16 2 C 0.27 6.57 2.62 -69.08 -0.18 6.39 16 3 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 4 C -0.52 -14.03 7.99 -34.44 -0.28 -14.31 16 5 H 0.06 1.68 7.33 -52.49 -0.38 1.30 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.91 11.32 55.43 0.63 -24.29 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.99 -20.40 3.12 -115.85 -0.36 -20.76 16 13 C 0.10 1.67 9.66 59.85 0.58 2.24 16 14 S 2.78 54.48 6.14 -107.50 -0.66 53.82 16 15 O -0.97 -22.84 16.70 -57.17 -0.95 -23.79 16 16 O -1.00 -20.65 16.21 -57.17 -0.93 -21.57 16 17 N -1.13 -16.68 6.05 -10.61 -0.06 -16.74 16 18 C 0.13 1.52 6.25 -4.04 -0.03 1.49 16 19 C -0.14 -1.40 5.68 -26.74 -0.15 -1.55 16 20 C 0.10 0.86 5.56 -4.04 -0.02 0.84 16 21 N -0.57 -4.58 2.55 -115.34 -0.29 -4.88 16 22 C 0.52 3.96 8.08 -11.08 -0.09 3.87 16 23 O -0.48 -5.42 17.47 5.61 0.10 -5.32 16 24 C -0.16 -0.43 7.03 -26.93 -0.19 -0.62 16 25 C -0.16 -0.45 7.03 -26.94 -0.19 -0.64 16 26 C 0.52 4.02 8.07 -11.09 -0.09 3.93 16 27 O -0.48 -5.53 17.48 5.60 0.10 -5.43 16 28 H 0.01 0.21 8.14 -51.92 -0.42 -0.22 16 29 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 30 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.55 7.02 -51.93 -0.36 1.19 16 34 H 0.06 1.04 7.02 -51.92 -0.36 0.67 16 35 H 0.41 5.37 8.65 -34.47 -0.30 5.08 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.94 7.75 -51.93 -0.40 0.53 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 0.84 7.83 -51.93 -0.41 0.44 16 41 H 0.10 0.83 7.82 -51.93 -0.41 0.42 16 42 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.12 0.12 8.14 -51.93 -0.42 -0.31 16 44 H 0.12 0.18 8.14 -51.93 -0.42 -0.25 16 45 H 0.12 0.13 8.14 -51.93 -0.42 -0.29 16 LS Contribution 385.81 15.07 5.81 5.81 Total: -1.00 -36.73 385.81 -8.68 -45.41 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.64 Total: 1.27 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -0.40 Total: 0.28 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: -0.09 Total: -66.67 kcal Atomic # 8 Polarization: -54.43 SS G_CDS: -1.69 Total: -56.12 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 54.48 SS G_CDS: -0.66 Total: 53.82 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.73 -8.68 -45.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283068040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.294 kcal (2) G-P(sol) polarization free energy of solvation -36.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds