Wall clock time and date at job start Wed Apr 1 2020 06:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47169 * 2 1 4 4 C 1.50706 * 109.46626 * 240.00825 * 2 1 3 5 5 H 1.07999 * 119.99433 * 239.99768 * 4 2 1 6 6 C 1.37871 * 120.00236 * 59.99711 * 4 2 1 7 7 N 1.31509 * 120.00376 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99846 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47019 * 90.00103 * 8 6 4 10 10 H 1.48501 * 109.47000 * 210.00061 * 8 6 4 11 11 H 1.48501 * 109.47230 * 330.00284 * 8 6 4 12 12 N 1.46489 * 109.47367 * 120.00634 * 2 1 3 13 13 C 1.46504 * 120.00051 * 59.99646 * 12 2 1 14 14 S 1.65606 * 120.00129 * 239.99892 * 12 2 1 15 15 O 1.42105 * 106.40008 * 336.45751 * 14 12 2 16 16 O 1.42098 * 106.40370 * 203.53936 * 14 12 2 17 17 N 1.65595 * 107.22013 * 89.99663 * 14 12 2 18 18 C 1.46508 * 119.99876 * 65.00349 * 17 14 12 19 19 C 1.52991 * 109.47282 * 164.99994 * 18 17 14 20 20 C 1.52999 * 109.47330 * 179.97438 * 19 18 17 21 21 N 1.46501 * 109.47226 * 180.02562 * 20 19 18 22 22 C 1.33873 * 122.76039 * 269.71246 * 21 20 19 23 23 O 1.21224 * 125.39889 * 359.97206 * 22 21 20 24 24 C 1.51324 * 109.20594 * 179.84357 * 22 21 20 25 25 C 1.54232 * 103.55173 * 0.38423 * 24 22 21 26 26 C 1.33878 * 122.76318 * 89.99972 * 21 20 19 27 27 O 1.21228 * 125.39765 * 359.97438 * 26 21 20 28 28 H 1.09010 * 109.46956 * 299.99542 * 1 2 3 29 29 H 1.09001 * 109.47294 * 59.99252 * 1 2 3 30 30 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00587 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47095 * 270.00091 * 13 12 2 33 33 H 1.08991 * 109.46942 * 30.00504 * 13 12 2 34 34 H 1.09009 * 109.46796 * 150.00143 * 13 12 2 35 35 H 0.96997 * 120.00034 * 245.00377 * 17 14 12 36 36 H 1.09006 * 109.46715 * 285.00199 * 18 17 14 37 37 H 1.08993 * 109.46869 * 44.99478 * 18 17 14 38 38 H 1.09003 * 109.47593 * 300.00518 * 19 18 17 39 39 H 1.09006 * 109.47454 * 59.99767 * 19 18 17 40 40 H 1.09000 * 109.46984 * 299.99903 * 20 19 18 41 41 H 1.08991 * 109.46891 * 60.00054 * 20 19 18 42 42 H 1.08997 * 110.79712 * 241.77439 * 24 22 21 43 43 H 1.09001 * 110.54983 * 118.87297 * 24 22 21 44 44 H 1.09007 * 110.60170 * 241.25780 * 25 24 22 45 45 H 1.09002 * 110.60493 * 118.29884 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2307 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3222 -1.1192 -4.0081 9 1 1.3445 -2.1612 -4.4126 10 1 2.4870 -0.1397 -5.1121 11 1 3.6306 -1.7563 -3.7122 12 7 2.0184 -0.6907 1.1960 13 6 1.6644 -2.0933 1.4277 14 16 2.9705 0.1140 2.2861 15 8 3.5795 1.1828 1.5748 16 8 3.7119 -0.8791 2.9812 17 7 1.9609 0.8088 3.3998 18 6 1.1512 -0.0356 4.2817 19 6 0.6090 0.8070 5.4379 20 6 -0.2372 -0.0746 6.3585 21 7 -0.7568 0.7325 7.4653 22 6 -0.1008 0.8830 8.6225 23 8 0.9715 0.3857 8.8916 24 6 -0.9084 1.7748 9.5403 25 6 -2.1628 2.1090 8.7075 26 6 -1.9295 1.3756 7.4047 27 8 -2.6845 1.3714 6.4563 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7093 1.1621 -3.4843 32 1 0.7376 -2.1445 1.9991 33 1 1.5295 -2.5968 0.4706 34 1 2.4630 -2.5820 1.9861 35 1 1.9057 1.7748 3.4682 36 1 0.3190 -0.4570 3.7177 37 1 1.7672 -0.8427 4.6780 38 1 1.4411 1.2286 6.0018 39 1 -0.0070 1.6143 5.0415 40 1 -1.0694 -0.4956 5.7943 41 1 0.3785 -0.8819 6.7549 42 1 -0.3558 2.6825 9.7827 43 1 -1.1829 1.2398 10.4494 44 1 -2.2342 3.1831 8.5357 45 1 -3.0611 1.7380 9.2011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283068040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:30 Heat of formation + Delta-G solvation = -170.412614 kcal Electronic energy + Delta-G solvation = -29127.856726 eV Core-core repulsion = 24885.398062 eV Total energy + Delta-G solvation = -4242.458663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.82741 -39.62936 -38.39332 -37.92947 -37.54278 -36.91949 -36.77726 -34.64496 -34.52389 -31.48739 -30.92737 -27.24736 -27.06985 -27.02568 -26.51503 -23.26803 -23.22512 -22.60249 -20.61420 -20.15301 -18.87649 -18.61018 -18.44651 -18.09481 -17.77671 -17.48941 -17.25486 -16.71238 -16.24340 -16.00741 -15.57836 -15.26814 -15.15010 -14.94739 -14.88320 -14.79116 -14.45362 -14.03471 -13.82111 -13.79295 -13.56187 -13.47714 -13.20254 -13.16844 -13.03246 -13.01374 -12.72601 -12.67598 -12.62079 -12.27312 -12.13732 -12.13638 -12.06503 -11.90254 -11.58857 -11.17661 -11.05662 -10.87932 -10.55200 -10.49052 -9.67158 -8.12504 -6.26018 -0.34914 0.51755 1.41572 1.43682 1.52312 1.53365 1.73331 2.03158 2.42542 2.60182 3.15924 3.24711 3.30508 3.40931 3.66209 3.77213 3.82102 3.86016 4.13106 4.21527 4.29939 4.35529 4.43717 4.50557 4.74859 4.75695 4.78657 4.80654 4.92365 4.92972 4.96647 5.00320 5.02035 5.10022 5.16865 5.26703 5.60472 5.67482 5.84699 5.86186 6.01409 6.17374 6.29283 6.34391 6.76384 6.81678 7.42823 8.91837 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.019749 B = 0.002484 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.452374 B =11270.347390 C =12041.031215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.957 3.043 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.996 5.996 13 C 0.089 3.911 14 S 2.797 3.203 15 O -1.017 7.017 16 O -1.008 7.008 17 N -1.121 6.121 18 C 0.119 3.881 19 C -0.129 4.129 20 C 0.094 3.906 21 N -0.579 5.579 22 C 0.519 3.481 23 O -0.523 6.523 24 C -0.142 4.142 25 C -0.143 4.143 26 C 0.518 3.482 27 O -0.522 6.522 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.421 0.579 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.602 1.596 26.661 28.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.782 3.218 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.838 5.838 13 C -0.056 4.056 14 S 2.806 3.194 15 O -1.002 7.002 16 O -0.992 6.992 17 N -0.883 5.883 18 C -0.008 4.008 19 C -0.169 4.169 20 C -0.028 4.028 21 N -0.322 5.322 22 C 0.310 3.690 23 O -0.397 6.397 24 C -0.181 4.181 25 C -0.182 4.182 26 C 0.310 3.690 27 O -0.396 6.396 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.255 0.745 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.161 0.839 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.530 1.255 26.140 27.525 hybrid contribution 0.158 0.009 -1.484 1.493 sum -8.373 1.264 24.655 26.069 Atomic orbital electron populations 1.21901 0.96830 1.00226 1.00340 1.18391 0.92197 0.91337 0.81173 0.95825 1.21659 1.31620 1.13068 0.91443 0.92373 1.25649 0.95236 0.95718 1.01719 1.69975 1.37363 1.23661 1.24362 0.85583 0.78777 0.78410 0.79008 1.19422 1.20976 1.19956 1.57516 1.69916 1.21150 1.35176 1.21530 1.00659 0.80624 1.02799 1.01156 0.73563 0.72326 0.72325 1.93553 1.75897 1.57428 1.73281 1.93504 1.69893 1.61211 1.74543 1.55769 1.62290 1.18031 1.52227 1.21283 0.95184 0.93297 0.91000 1.21944 1.00036 0.99083 0.95817 1.21715 0.99667 0.93942 0.87481 1.46989 1.21861 1.46317 1.16997 1.21749 0.84653 0.80111 0.82459 1.90793 1.21564 1.49908 1.77419 1.22598 0.94922 1.01631 0.98984 1.22605 1.01221 1.04235 0.90117 1.21757 0.78812 0.77587 0.90867 1.90805 1.48702 1.60983 1.39112 0.94795 0.91631 0.93857 0.92641 0.91201 0.90946 0.90881 0.74454 0.90283 0.89908 0.90829 0.90638 0.88058 0.88122 0.83897 0.83566 0.83953 0.83565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.04 8.97 71.98 0.65 -5.40 16 2 C 0.27 13.56 2.62 44.25 0.12 13.67 16 3 H 0.02 1.34 6.91 -2.38 -0.02 1.33 16 4 C -0.54 -29.37 7.99 25.60 0.20 -29.16 16 5 H 0.06 3.14 7.33 -2.91 -0.02 3.12 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.91 -51.90 11.32 21.44 0.24 -51.66 16 8 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 9 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 12 N -1.00 -40.88 3.12 -520.44 -1.62 -42.50 16 13 C 0.09 3.03 9.66 127.77 1.23 4.26 16 14 S 2.80 109.82 6.14 -56.49 -0.35 109.47 16 15 O -1.02 -48.95 16.70 -128.00 -2.14 -51.09 16 16 O -1.01 -41.33 16.21 -128.00 -2.07 -43.41 16 17 N -1.12 -32.32 6.05 -187.49 -1.14 -33.45 16 18 C 0.12 2.72 6.25 86.37 0.54 3.26 16 19 C -0.13 -2.46 5.68 30.59 0.17 -2.29 16 20 C 0.09 1.59 5.56 86.38 0.48 2.07 16 21 N -0.58 -8.52 2.55 -756.67 -1.93 -10.45 16 22 C 0.52 6.96 8.08 88.00 0.71 7.67 16 23 O -0.52 -11.48 17.47 -2.86 -0.05 -11.53 16 24 C -0.14 -0.26 7.03 30.46 0.21 -0.04 16 25 C -0.14 -0.28 7.03 30.46 0.21 -0.07 16 26 C 0.52 7.09 8.07 87.99 0.71 7.80 16 27 O -0.52 -11.76 17.48 -2.87 -0.05 -11.81 16 28 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 30 H 0.04 1.82 7.67 -2.39 -0.02 1.80 16 31 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 2.62 7.02 -2.39 -0.02 2.60 16 34 H 0.07 2.31 7.02 -2.38 -0.02 2.30 16 35 H 0.42 10.81 8.65 -96.75 -0.84 9.98 16 36 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.08 1.86 7.75 -2.39 -0.02 1.84 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.10 1.65 7.83 -2.39 -0.02 1.63 16 41 H 0.10 1.64 7.82 -2.39 -0.02 1.62 16 42 H 0.14 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.15 -0.38 8.14 -2.39 -0.02 -0.40 16 44 H 0.14 -0.20 8.14 -2.38 -0.02 -0.22 16 45 H 0.15 -0.34 8.14 -2.39 -0.02 -0.36 16 Total: -1.00 -81.75 385.81 -1.21 -82.97 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.18 Total: 14.65 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 5.69 Total: 3.12 kcal Atomic # 7 Polarization: -133.62 SS G_CDS: -4.45 Total: -138.07 kcal Atomic # 8 Polarization: -113.53 SS G_CDS: -4.31 Total: -117.84 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 109.82 SS G_CDS: -0.35 Total: 109.47 kcal Total: -81.75 -1.21 -82.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283068040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.447 kcal (2) G-P(sol) polarization free energy of solvation -81.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds