Wall clock time and date at job start Wed Apr 1 2020 06:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47180 * 2 1 4 4 N 1.46496 * 109.47053 * 120.00173 * 2 1 3 5 5 C 1.33882 * 122.76441 * 300.02354 * 4 2 1 6 6 O 1.21229 * 125.38808 * 0.02562 * 5 4 2 7 7 C 1.51309 * 109.20920 * 179.97438 * 5 4 2 8 8 C 1.54232 * 103.55737 * 359.97438 * 7 5 4 9 9 H 1.08992 * 110.60413 * 241.32808 * 8 7 5 10 10 N 1.46498 * 110.60259 * 118.51776 * 8 7 5 11 11 S 1.65600 * 119.99763 * 136.73060 * 10 8 7 12 12 O 1.42099 * 106.40276 * 307.60695 * 11 10 8 13 13 O 1.42102 * 106.39963 * 174.68725 * 11 10 8 14 14 N 1.65599 * 107.21788 * 61.14634 * 11 10 8 15 15 C 1.46496 * 119.99996 * 275.06594 * 14 11 10 16 16 C 1.46501 * 119.99772 * 95.06760 * 14 11 10 17 17 H 1.08998 * 109.47441 * 354.91463 * 16 14 11 18 18 C 1.53005 * 109.47239 * 114.91224 * 16 14 11 19 19 C 1.50696 * 109.46977 * 234.91230 * 16 14 11 20 20 H 1.07994 * 120.00051 * 355.53346 * 19 16 14 21 21 C 1.37884 * 119.99981 * 175.53806 * 19 16 14 22 22 N 1.31515 * 120.00177 * 180.02562 * 21 19 16 23 23 Si 1.86806 * 119.99726 * 359.97438 * 21 19 16 24 24 H 1.48495 * 109.46840 * 90.00452 * 23 21 19 25 25 H 1.48499 * 109.46670 * 210.00267 * 23 21 19 26 26 H 1.48496 * 109.47166 * 330.00283 * 23 21 19 27 27 C 1.34225 * 122.71244 * 119.92053 * 4 2 1 28 28 O 1.21219 * 125.59015 * 0.02562 * 27 4 2 29 29 H 1.08995 * 109.46966 * 300.00010 * 1 2 3 30 30 H 1.09003 * 109.46932 * 60.00495 * 1 2 3 31 31 H 1.09009 * 109.46915 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47055 * 239.99684 * 2 1 3 33 33 H 1.08995 * 109.47179 * 60.00120 * 3 2 1 34 34 H 1.09004 * 109.46970 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47018 * 299.99935 * 3 2 1 36 36 H 1.09003 * 110.60474 * 241.48250 * 7 5 4 37 37 H 1.09000 * 110.60731 * 118.52082 * 7 5 4 38 38 H 0.96999 * 119.99856 * 316.72820 * 10 8 7 39 39 H 1.08992 * 109.46912 * 90.00290 * 15 14 11 40 40 H 1.09005 * 109.46722 * 210.00325 * 15 14 11 41 41 H 1.09000 * 109.47335 * 329.99703 * 15 14 11 42 42 H 1.09003 * 109.46852 * 66.02667 * 18 16 14 43 43 H 1.08996 * 109.47369 * 186.03288 * 18 16 14 44 44 H 1.09000 * 109.47187 * 306.03079 * 18 16 14 45 45 H 0.96994 * 120.00414 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7287 -0.2819 2.4377 6 8 1.0472 0.6804 2.7190 7 6 2.3858 -1.2121 3.4340 8 6 3.1126 -2.2406 2.5435 9 1 2.7253 -3.2437 2.7217 10 7 4.5576 -2.1978 2.7806 11 16 5.4171 -3.6071 2.9122 12 8 4.7526 -4.3924 3.8924 13 8 6.7850 -3.2351 3.0108 14 7 5.2549 -4.4161 1.4763 15 6 4.0912 -5.2761 1.2476 16 6 6.2751 -4.2716 0.4349 17 1 7.0099 -3.5293 0.7465 18 6 6.9710 -5.6160 0.2127 19 6 5.6232 -3.8252 -0.8483 20 1 4.5486 -3.7347 -0.9051 21 6 6.3989 -3.5325 -1.9501 22 7 5.8300 -3.1424 -3.0699 23 14 8.2578 -3.6885 -1.8517 24 1 8.6605 -5.0631 -2.2433 25 1 8.8862 -2.7074 -2.7724 26 1 8.7043 -3.4190 -0.4614 27 6 2.7912 -1.7864 1.1363 28 8 3.1719 -2.3266 0.1201 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6351 -1.7037 4.0528 37 1 3.0991 -0.6686 4.0536 38 1 5.0109 -1.3439 2.8604 39 1 3.2892 -4.6904 0.7987 40 1 4.3670 -6.0894 0.5762 41 1 3.7519 -5.6887 2.1977 42 1 6.2586 -6.3299 -0.2008 43 1 7.7999 -5.4855 -0.4829 44 1 7.3502 -5.9904 1.1636 45 1 6.3757 -2.9361 -3.8448 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330425275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:49 Heat of formation + Delta-G solvation = -149.906495 kcal Electronic energy + Delta-G solvation = -31417.525135 eV Core-core repulsion = 27175.955684 eV Total energy + Delta-G solvation = -4241.569451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.98945 -39.63527 -38.42475 -37.99183 -37.21800 -37.04886 -36.95739 -34.37963 -34.21719 -31.71741 -30.59140 -28.23779 -27.19108 -26.90722 -26.69080 -23.92661 -22.98352 -22.63055 -20.66671 -20.15510 -19.08269 -18.78198 -18.38833 -18.11696 -17.93863 -17.44182 -17.09401 -16.51455 -15.96974 -15.88160 -15.27526 -15.21297 -15.16110 -15.02288 -14.80742 -14.49850 -14.40941 -14.11267 -14.06708 -13.72355 -13.69734 -13.51555 -13.25784 -13.12573 -13.04158 -12.98022 -12.91383 -12.75438 -12.68233 -12.45032 -12.39937 -12.19621 -12.04470 -11.93798 -11.53145 -11.12922 -10.92078 -10.71336 -10.67023 -10.48900 -9.67817 -8.14848 -6.14591 -0.42731 0.53831 1.31430 1.39142 1.45284 1.46638 1.62905 2.00475 2.38576 2.51337 3.04738 3.14355 3.18151 3.22620 3.45782 3.81230 3.88044 3.97164 4.01919 4.10886 4.21330 4.33503 4.50716 4.64547 4.69952 4.71066 4.74303 4.78198 4.78977 4.80115 4.89310 4.94402 5.03740 5.13507 5.18886 5.21668 5.27497 5.54818 5.63400 5.77418 5.90597 5.98653 6.34817 6.52558 6.79358 7.15263 7.47848 9.00375 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011414 B = 0.005283 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.635650 B = 5298.713964 C = 6881.877224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.113 3.887 3 C -0.157 4.157 4 N -0.571 5.571 5 C 0.532 3.468 6 O -0.504 6.504 7 C -0.149 4.149 8 C 0.125 3.875 9 H 0.156 0.844 10 N -1.100 6.100 11 S 2.798 3.202 12 O -0.985 6.985 13 O -1.006 7.006 14 N -0.983 5.983 15 C 0.092 3.908 16 C 0.240 3.760 17 H 0.041 0.959 18 C -0.158 4.158 19 C -0.496 4.496 20 H 0.084 0.916 21 C 0.021 3.979 22 N -0.941 5.941 23 Si 0.909 3.091 24 H -0.265 1.265 25 H -0.302 1.302 26 H -0.254 1.254 27 C 0.489 3.511 28 O -0.453 6.453 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.167 0.833 37 H 0.151 0.849 38 H 0.428 0.572 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.039 0.961 44 H 0.055 0.945 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.057 3.779 13.110 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.012 3.988 3 C -0.215 4.215 4 N -0.316 5.316 5 C 0.323 3.677 6 O -0.378 6.378 7 C -0.189 4.189 8 C 0.013 3.987 9 H 0.173 0.827 10 N -0.860 5.860 11 S 2.807 3.193 12 O -0.969 6.969 13 O -0.991 6.991 14 N -0.824 5.824 15 C -0.053 4.053 16 C 0.134 3.866 17 H 0.059 0.941 18 C -0.217 4.217 19 C -0.535 4.535 20 H 0.102 0.898 21 C -0.176 4.176 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.191 1.191 25 H -0.230 1.230 26 H -0.179 1.179 27 C 0.274 3.726 28 O -0.320 6.320 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.184 0.816 37 H 0.168 0.832 38 H 0.264 0.736 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.772 3.556 13.249 16.842 hybrid contribution 1.137 0.657 -1.418 1.933 sum -8.635 4.213 11.830 15.240 Atomic orbital electron populations 1.22068 0.92133 1.02808 1.04142 1.21449 0.96496 0.94093 0.86812 1.22077 1.00798 0.94455 1.04157 1.47153 1.46941 1.27865 1.09667 1.21090 0.78690 0.84478 0.83479 1.90724 1.37414 1.27544 1.82123 1.23011 1.02966 0.95572 0.97389 1.21587 0.81853 1.04680 0.90549 0.82682 1.55829 1.15481 1.26035 1.88656 1.01362 0.72210 0.72913 0.72861 1.93571 1.76668 1.68920 1.57709 1.93571 1.34595 1.83755 1.87134 1.57244 1.32180 1.59618 1.33310 1.21516 0.86787 0.94531 1.02467 1.18859 0.86365 0.94310 0.87071 0.94143 1.22347 0.99785 0.99336 1.00199 1.21678 0.96420 1.41596 0.93815 0.89762 1.25502 1.01103 0.95568 0.95459 1.70021 1.36508 1.48850 1.02900 0.86447 0.83423 0.77859 0.78533 1.19062 1.22960 1.17879 1.22000 0.77179 0.79962 0.93474 1.91065 1.48061 1.56123 1.36733 0.91216 0.89372 0.92308 0.89777 0.91109 0.93521 0.89324 0.81555 0.83157 0.73641 0.93145 0.90853 0.89175 0.91511 0.94278 0.92596 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.17 71.98 0.66 -2.45 16 2 C 0.11 2.82 3.31 44.99 0.15 2.97 16 3 C -0.16 -3.59 9.17 71.98 0.66 -2.93 16 4 N -0.57 -13.95 2.48 -733.75 -1.82 -15.77 16 5 C 0.53 10.87 7.42 87.99 0.65 11.52 16 6 O -0.50 -12.25 14.82 -2.87 -0.04 -12.29 16 7 C -0.15 -1.96 6.80 30.46 0.21 -1.76 16 8 C 0.13 2.56 3.79 44.86 0.17 2.73 16 9 H 0.16 2.62 7.53 -2.39 -0.02 2.60 16 10 N -1.10 -26.60 5.46 -169.95 -0.93 -27.53 16 11 S 2.80 89.18 6.02 -56.49 -0.34 88.84 16 12 O -0.99 -30.80 16.46 -128.00 -2.11 -32.90 16 13 O -1.01 -38.98 16.61 -128.00 -2.13 -41.11 16 14 N -0.98 -35.57 3.12 -520.46 -1.62 -37.20 16 15 C 0.09 2.85 9.50 127.77 1.21 4.07 16 16 C 0.24 10.65 2.18 44.25 0.10 10.75 16 17 H 0.04 1.94 5.61 -2.39 -0.01 1.92 16 18 C -0.16 -6.39 8.67 71.98 0.62 -5.76 16 19 C -0.50 -26.01 8.71 25.60 0.22 -25.79 16 20 H 0.08 4.77 5.44 -2.91 -0.02 4.75 16 21 C 0.02 1.17 5.45 84.66 0.46 1.64 16 22 N -0.94 -57.23 13.96 21.45 0.30 -56.93 16 23 Si 0.91 43.97 24.57 68.60 1.69 45.66 16 24 H -0.26 -12.16 6.92 99.48 0.69 -11.47 16 25 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 26 H -0.25 -11.86 6.41 99.48 0.64 -11.23 16 27 C 0.49 13.79 7.74 87.94 0.68 14.47 16 28 O -0.45 -17.69 14.01 -2.84 -0.04 -17.73 16 29 H 0.07 1.45 6.64 -2.39 -0.02 1.43 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.18 8.14 -2.38 -0.02 1.17 16 32 H 0.08 2.54 7.42 -2.38 -0.02 2.52 16 33 H 0.07 1.62 6.65 -2.39 -0.02 1.60 16 34 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.17 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.15 1.40 7.94 -2.39 -0.02 1.38 16 38 H 0.43 8.78 8.91 -96.74 -0.86 7.92 16 39 H 0.05 1.59 6.88 -2.39 -0.02 1.57 16 40 H 0.07 2.33 6.83 -2.38 -0.02 2.32 16 41 H 0.09 2.23 7.07 -2.39 -0.02 2.22 16 42 H 0.07 2.57 7.09 -2.39 -0.02 2.55 16 43 H 0.04 1.64 3.99 -2.39 -0.01 1.63 16 44 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -75.95 365.05 -1.16 -77.11 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.09 Total: 20.39 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 5.80 Total: 9.46 kcal Atomic # 7 Polarization: -133.35 SS G_CDS: -4.08 Total: -137.43 kcal Atomic # 8 Polarization: -99.72 SS G_CDS: -4.32 Total: -104.04 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.69 Total: 45.66 kcal Atomic # 16 Polarization: 89.18 SS G_CDS: -0.34 Total: 88.84 kcal Total: -75.95 -1.16 -77.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330425275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.800 kcal (2) G-P(sol) polarization free energy of solvation -75.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds