Wall clock time and date at job start Wed Apr 1 2020 06:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47283 * 2 1 4 4 N 1.46495 * 109.47098 * 120.00013 * 2 1 3 5 5 C 1.33880 * 122.76439 * 300.00099 * 4 2 1 6 6 O 1.21222 * 125.39490 * 0.02562 * 5 4 2 7 7 C 1.51677 * 109.23996 * 180.02562 * 5 4 2 8 8 C 1.54231 * 103.38471 * 359.87720 * 7 5 4 9 9 H 1.09004 * 110.60448 * 118.70976 * 8 7 5 10 10 N 1.46504 * 110.60641 * 241.51986 * 8 7 5 11 11 S 1.65598 * 119.99893 * 212.85580 * 10 8 7 12 12 O 1.42101 * 106.40084 * 311.45457 * 11 10 8 13 13 O 1.42101 * 106.40157 * 178.54136 * 11 10 8 14 14 N 1.65599 * 107.22076 * 64.99979 * 11 10 8 15 15 C 1.46505 * 119.99715 * 270.00020 * 14 11 10 16 16 C 1.46497 * 119.99944 * 90.00262 * 14 11 10 17 17 H 1.08996 * 109.47049 * 359.97438 * 16 14 11 18 18 C 1.52997 * 109.47188 * 120.00026 * 16 14 11 19 19 C 1.50706 * 109.46582 * 239.99877 * 16 14 11 20 20 H 1.07999 * 120.00196 * 359.97438 * 19 16 14 21 21 C 1.37879 * 119.99394 * 179.97438 * 19 16 14 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 16 24 24 H 1.48494 * 109.47347 * 59.99862 * 23 21 19 25 25 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 27 27 C 1.33879 * 122.75955 * 119.99897 * 4 2 1 28 28 O 1.21224 * 125.40077 * 359.97438 * 27 4 2 29 29 H 1.09002 * 109.47486 * 300.00079 * 1 2 3 30 30 H 1.09000 * 109.47321 * 59.99854 * 1 2 3 31 31 H 1.08999 * 109.47254 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46995 * 240.00030 * 2 1 3 33 33 H 1.09000 * 109.47062 * 300.00305 * 3 2 1 34 34 H 1.09005 * 109.46467 * 59.99792 * 3 2 1 35 35 H 1.08993 * 109.47566 * 179.97438 * 3 2 1 36 36 H 1.09006 * 110.65512 * 241.43347 * 7 5 4 37 37 H 1.09002 * 110.72164 * 118.35246 * 7 5 4 38 38 H 0.97000 * 119.99781 * 32.85237 * 10 8 7 39 39 H 1.09005 * 109.46851 * 270.00240 * 15 14 11 40 40 H 1.08997 * 109.47129 * 29.99515 * 15 14 11 41 41 H 1.08993 * 109.46804 * 150.00155 * 15 14 11 42 42 H 1.09002 * 109.47153 * 299.99573 * 18 16 14 43 43 H 1.09001 * 109.46832 * 179.97438 * 18 16 14 44 44 H 1.09004 * 109.47261 * 59.99745 * 18 16 14 45 45 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7291 -0.2816 2.4377 6 8 1.0479 0.6809 2.7191 7 6 2.3884 -1.2129 3.4370 8 6 3.1119 -2.2410 2.5435 9 1 4.1873 -2.2123 2.7192 10 7 2.5881 -3.5886 2.7799 11 16 3.5902 -4.9007 2.6515 12 8 4.2858 -4.7554 1.4210 13 8 2.8023 -6.0399 2.9690 14 7 4.7260 -4.7691 3.8494 15 6 5.9816 -4.0589 3.5934 16 6 4.4753 -5.3630 5.1649 17 1 3.4976 -5.8447 5.1657 18 6 5.5564 -6.4018 5.4699 19 6 4.5043 -4.2841 6.2167 20 1 4.6912 -3.2588 5.9336 21 6 4.2922 -4.6062 7.5405 22 7 4.0652 -5.8549 7.8853 23 14 4.3274 -3.2688 8.8442 24 1 3.2782 -2.2607 8.5476 25 1 4.0734 -3.8708 10.1778 26 1 5.6592 -2.6119 8.8437 27 6 2.7905 -1.7827 1.1376 28 8 3.1702 -2.3205 0.1197 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4426 0.0005 36 1 1.6387 -1.7042 4.0574 37 1 3.1041 -0.6710 4.0552 38 1 1.6543 -3.7122 3.0116 39 1 6.7255 -4.7606 3.2161 40 1 5.8121 -3.2765 2.8537 41 1 6.3411 -3.6114 4.5199 42 1 5.5355 -7.1821 4.7091 43 1 5.3701 -6.8433 6.4489 44 1 6.5341 -5.9198 5.4691 45 1 3.9163 -6.0814 8.8166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330425278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:56 Heat of formation + Delta-G solvation = -131.781974 kcal Electronic energy + Delta-G solvation = -30716.065436 eV Core-core repulsion = 26475.281924 eV Total energy + Delta-G solvation = -4240.783513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.18780 -38.74199 -36.79832 -36.38958 -36.20874 -36.12508 -35.32483 -33.29314 -32.69116 -29.72349 -29.17574 -27.55771 -25.88027 -25.54353 -25.25826 -23.19250 -22.12167 -20.89397 -19.53182 -19.13126 -17.53445 -17.35323 -17.25255 -16.94178 -16.39699 -16.36265 -15.58532 -15.17665 -15.00029 -14.46845 -14.43683 -14.34639 -14.02427 -13.65354 -13.48589 -13.32183 -13.30003 -12.86933 -12.80323 -12.44902 -12.09731 -12.08481 -11.79108 -11.69617 -11.64690 -11.58368 -11.55247 -11.41645 -11.28818 -11.13706 -11.02364 -10.93552 -10.50605 -10.28713 -10.15322 -10.13086 -9.92686 -9.52744 -9.29834 -8.55486 -8.08468 -6.16686 -4.26350 1.00178 1.39749 2.28119 2.50153 3.19664 3.24494 3.27210 3.30565 3.78319 4.01143 4.06191 4.16321 4.28361 4.53343 4.63785 4.74269 4.80800 4.83579 5.05526 5.13403 5.14183 5.28412 5.42786 5.49146 5.49989 5.52700 5.69069 5.70122 5.87655 5.88680 6.05765 6.24329 6.55825 6.64779 6.78240 6.80134 6.91338 7.05514 7.15543 7.39589 7.53499 7.62714 7.70485 7.96949 8.17301 8.75891 9.40485 10.88203 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.004127 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.026881 B = 6783.078517 C = 8179.285402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.120 3.880 3 C -0.166 4.166 4 N -0.571 5.571 5 C 0.531 3.469 6 O -0.480 6.480 7 C -0.163 4.163 8 C 0.132 3.868 9 H 0.135 0.865 10 N -1.107 6.107 11 S 2.773 3.227 12 O -0.975 6.975 13 O -0.973 6.973 14 N -0.988 5.988 15 C 0.103 3.897 16 C 0.267 3.733 17 H 0.060 0.940 18 C -0.145 4.145 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.066 3.934 22 N -0.885 5.885 23 Si 0.896 3.104 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.507 3.493 28 O -0.448 6.448 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.418 0.582 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.013 0.987 43 H 0.093 0.907 44 H 0.033 0.967 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.053 11.677 -10.602 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.019 3.981 3 C -0.224 4.224 4 N -0.316 5.316 5 C 0.320 3.680 6 O -0.351 6.351 7 C -0.204 4.204 8 C 0.019 3.981 9 H 0.152 0.848 10 N -0.864 5.864 11 S 2.781 3.219 12 O -0.958 6.958 13 O -0.957 6.957 14 N -0.831 5.831 15 C -0.044 4.044 16 C 0.165 3.835 17 H 0.077 0.923 18 C -0.205 4.205 19 C -0.569 4.569 20 H 0.081 0.919 21 C -0.137 4.137 22 N -0.523 5.523 23 Si 0.724 3.276 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.203 1.203 27 C 0.292 3.708 28 O -0.315 6.315 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.252 0.748 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.032 0.968 43 H 0.111 0.889 44 H 0.052 0.948 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.129 11.087 -11.604 16.351 hybrid contribution -0.336 0.961 1.183 1.561 sum -3.465 12.048 -10.420 16.302 Atomic orbital electron populations 1.22168 0.93577 1.02891 1.03834 1.21400 0.95540 0.93993 0.87186 1.22166 1.01623 0.94780 1.03840 1.47023 1.47081 1.28241 1.09252 1.20892 0.79046 0.84617 0.83416 1.90731 1.35925 1.26617 1.81874 1.22984 1.02923 0.96392 0.98057 1.21278 1.01703 0.84425 0.90666 0.84755 1.56253 1.24970 1.18465 1.86729 1.02292 0.73254 0.72912 0.73395 1.93633 1.73380 1.86255 1.42565 1.93617 1.70353 1.46648 1.85105 1.57773 1.28161 1.68302 1.28903 1.21283 0.86381 0.95369 1.01346 1.18762 0.96209 0.91938 0.76630 0.92278 1.22058 0.98432 0.97714 1.02294 1.21306 1.50163 0.94017 0.91379 0.91868 1.24923 0.94826 0.95484 0.98497 1.69865 1.47486 1.16871 1.18051 0.86604 0.78535 0.81730 0.80746 1.20184 1.21284 1.20260 1.21537 0.77055 0.79157 0.93071 1.90836 1.49396 1.55739 1.35522 0.90700 0.90753 0.92146 0.87769 0.90765 0.90707 0.92113 0.84763 0.84811 0.74780 0.93445 0.93418 0.89868 0.96839 0.88879 0.94804 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 9.17 37.16 0.34 -1.14 16 2 C 0.12 1.18 3.31 -67.93 -0.22 0.96 16 3 C -0.17 -1.41 9.17 37.16 0.34 -1.07 16 4 N -0.57 -6.42 2.48 -108.11 -0.27 -6.68 16 5 C 0.53 5.90 7.43 -10.90 -0.08 5.82 16 6 O -0.48 -6.24 14.82 5.61 0.08 -6.15 16 7 C -0.16 -1.58 6.81 -26.76 -0.18 -1.77 16 8 C 0.13 1.59 3.63 -68.13 -0.25 1.34 16 9 H 0.14 1.48 6.20 -51.93 -0.32 1.16 16 10 N -1.11 -15.58 5.58 -5.06 -0.03 -15.61 16 11 S 2.77 50.96 6.02 -107.50 -0.65 50.31 16 12 O -0.98 -19.47 16.67 -57.58 -0.96 -20.43 16 13 O -0.97 -21.09 16.70 -57.17 -0.95 -22.04 16 14 N -0.99 -18.65 3.12 -115.85 -0.36 -19.01 16 15 C 0.10 1.63 9.11 59.85 0.55 2.18 16 16 C 0.27 6.05 2.62 -69.08 -0.18 5.87 16 17 H 0.06 1.50 6.91 -51.93 -0.36 1.14 16 18 C -0.15 -3.29 8.97 37.16 0.33 -2.96 16 19 C -0.53 -12.39 7.99 -34.44 -0.28 -12.66 16 20 H 0.06 1.38 7.33 -52.49 -0.38 1.00 16 21 C 0.07 1.62 5.30 -17.82 -0.09 1.53 16 22 N -0.89 -23.14 11.32 55.43 0.63 -22.52 16 23 Si 0.90 19.09 29.54 -169.99 -5.02 14.07 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 25 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 27 C 0.51 6.71 7.73 -11.08 -0.09 6.62 16 28 O -0.45 -7.45 16.93 5.61 0.09 -7.35 16 29 H 0.07 0.75 6.64 -51.93 -0.34 0.41 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.10 1.05 7.41 -51.93 -0.38 0.66 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.72 6.65 -51.93 -0.35 0.38 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.13 1.22 7.81 -51.93 -0.41 0.82 16 37 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.42 5.01 8.68 -34.47 -0.30 4.71 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.63 6.18 -51.93 -0.32 0.31 16 41 H 0.08 1.32 7.02 -51.93 -0.36 0.95 16 42 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 44 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 45 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -32.42 375.62 -7.92 -40.35 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.34 Total: 4.70 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 0.19 Total: 4.73 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.03 Total: -63.82 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -1.74 Total: -55.99 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Atomic # 16 Polarization: 50.96 SS G_CDS: -0.65 Total: 50.31 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.42 -7.92 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330425278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.437 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds