Wall clock time and date at job start Wed Apr 1 2020 06:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47283 * 2 1 4 4 N 1.46495 * 109.47098 * 120.00013 * 2 1 3 5 5 C 1.33880 * 122.76439 * 300.00099 * 4 2 1 6 6 O 1.21222 * 125.39490 * 0.02562 * 5 4 2 7 7 C 1.51677 * 109.23996 * 180.02562 * 5 4 2 8 8 C 1.54231 * 103.38471 * 359.87720 * 7 5 4 9 9 H 1.09004 * 110.60448 * 118.70976 * 8 7 5 10 10 N 1.46504 * 110.60641 * 241.51986 * 8 7 5 11 11 S 1.65598 * 119.99893 * 212.85580 * 10 8 7 12 12 O 1.42101 * 106.40084 * 311.45457 * 11 10 8 13 13 O 1.42101 * 106.40157 * 178.54136 * 11 10 8 14 14 N 1.65599 * 107.22076 * 64.99979 * 11 10 8 15 15 C 1.46505 * 119.99715 * 270.00020 * 14 11 10 16 16 C 1.46497 * 119.99944 * 90.00262 * 14 11 10 17 17 H 1.08996 * 109.47049 * 359.97438 * 16 14 11 18 18 C 1.52997 * 109.47188 * 120.00026 * 16 14 11 19 19 C 1.50706 * 109.46582 * 239.99877 * 16 14 11 20 20 H 1.07999 * 120.00196 * 359.97438 * 19 16 14 21 21 C 1.37879 * 119.99394 * 179.97438 * 19 16 14 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 16 24 24 H 1.48494 * 109.47347 * 59.99862 * 23 21 19 25 25 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 27 27 C 1.33879 * 122.75955 * 119.99897 * 4 2 1 28 28 O 1.21224 * 125.40077 * 359.97438 * 27 4 2 29 29 H 1.09002 * 109.47486 * 300.00079 * 1 2 3 30 30 H 1.09000 * 109.47321 * 59.99854 * 1 2 3 31 31 H 1.08999 * 109.47254 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46995 * 240.00030 * 2 1 3 33 33 H 1.09000 * 109.47062 * 300.00305 * 3 2 1 34 34 H 1.09005 * 109.46467 * 59.99792 * 3 2 1 35 35 H 1.08993 * 109.47566 * 179.97438 * 3 2 1 36 36 H 1.09006 * 110.65512 * 241.43347 * 7 5 4 37 37 H 1.09002 * 110.72164 * 118.35246 * 7 5 4 38 38 H 0.97000 * 119.99781 * 32.85237 * 10 8 7 39 39 H 1.09005 * 109.46851 * 270.00240 * 15 14 11 40 40 H 1.08997 * 109.47129 * 29.99515 * 15 14 11 41 41 H 1.08993 * 109.46804 * 150.00155 * 15 14 11 42 42 H 1.09002 * 109.47153 * 299.99573 * 18 16 14 43 43 H 1.09001 * 109.46832 * 179.97438 * 18 16 14 44 44 H 1.09004 * 109.47261 * 59.99745 * 18 16 14 45 45 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7291 -0.2816 2.4377 6 8 1.0479 0.6809 2.7191 7 6 2.3884 -1.2129 3.4370 8 6 3.1119 -2.2410 2.5435 9 1 4.1873 -2.2123 2.7192 10 7 2.5881 -3.5886 2.7799 11 16 3.5902 -4.9007 2.6515 12 8 4.2858 -4.7554 1.4210 13 8 2.8023 -6.0399 2.9690 14 7 4.7260 -4.7691 3.8494 15 6 5.9816 -4.0589 3.5934 16 6 4.4753 -5.3630 5.1649 17 1 3.4976 -5.8447 5.1657 18 6 5.5564 -6.4018 5.4699 19 6 4.5043 -4.2841 6.2167 20 1 4.6912 -3.2588 5.9336 21 6 4.2922 -4.6062 7.5405 22 7 4.0652 -5.8549 7.8853 23 14 4.3274 -3.2688 8.8442 24 1 3.2782 -2.2607 8.5476 25 1 4.0734 -3.8708 10.1778 26 1 5.6592 -2.6119 8.8437 27 6 2.7905 -1.7827 1.1376 28 8 3.1702 -2.3205 0.1197 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4426 0.0005 36 1 1.6387 -1.7042 4.0574 37 1 3.1041 -0.6710 4.0552 38 1 1.6543 -3.7122 3.0116 39 1 6.7255 -4.7606 3.2161 40 1 5.8121 -3.2765 2.8537 41 1 6.3411 -3.6114 4.5199 42 1 5.5355 -7.1821 4.7091 43 1 5.3701 -6.8433 6.4489 44 1 6.5341 -5.9198 5.4691 45 1 3.9163 -6.0814 8.8166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330425278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:54 Heat of formation + Delta-G solvation = -156.110286 kcal Electronic energy + Delta-G solvation = -30717.120391 eV Core-core repulsion = 26475.281924 eV Total energy + Delta-G solvation = -4241.838468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.13495 -39.77742 -38.34024 -37.89099 -37.28029 -37.16003 -36.89991 -34.44968 -34.25587 -30.89196 -30.63731 -28.24850 -27.21303 -27.01390 -26.73117 -24.01555 -23.08142 -22.59191 -20.75952 -20.18119 -18.89635 -18.60466 -18.34943 -18.24504 -17.95928 -17.50767 -17.00099 -16.49490 -16.07657 -15.88700 -15.34260 -15.23742 -15.11549 -14.95358 -14.82568 -14.49736 -14.44715 -14.14360 -13.72717 -13.68112 -13.45067 -13.18517 -13.15073 -13.09429 -12.96008 -12.89817 -12.81530 -12.62965 -12.59719 -12.48458 -12.42275 -12.21628 -12.12811 -12.05043 -11.81314 -11.13597 -11.04683 -10.85636 -10.56883 -10.41066 -9.65501 -8.01240 -6.15990 -0.41961 0.38066 1.38128 1.53086 1.55259 1.56854 1.62523 1.98098 2.52471 2.56877 2.96308 3.08270 3.19556 3.28601 3.43922 3.75349 3.81584 3.94383 4.04759 4.07600 4.25117 4.27756 4.64503 4.65791 4.69614 4.75563 4.79097 4.80678 4.85469 5.00275 5.02489 5.08066 5.13222 5.18988 5.21121 5.32212 5.63739 5.69874 5.75428 5.86487 5.94835 6.15801 6.20005 6.35040 6.68099 6.93946 7.54270 9.03315 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.004127 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.026881 B = 6783.078517 C = 8179.285402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.110 3.890 3 C -0.159 4.159 4 N -0.567 5.567 5 C 0.536 3.464 6 O -0.496 6.496 7 C -0.153 4.153 8 C 0.125 3.875 9 H 0.150 0.850 10 N -1.099 6.099 11 S 2.791 3.209 12 O -0.991 6.991 13 O -1.012 7.012 14 N -0.991 5.991 15 C 0.094 3.906 16 C 0.272 3.728 17 H 0.027 0.973 18 C -0.141 4.141 19 C -0.525 4.525 20 H 0.083 0.917 21 C 0.017 3.983 22 N -0.921 5.921 23 Si 0.956 3.044 24 H -0.264 1.264 25 H -0.299 1.299 26 H -0.270 1.270 27 C 0.511 3.489 28 O -0.487 6.487 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.145 0.855 37 H 0.161 0.839 38 H 0.428 0.572 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.015 0.985 43 H 0.069 0.931 44 H 0.045 0.955 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 14.208 -10.675 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 C -0.217 4.217 4 N -0.312 5.312 5 C 0.326 3.674 6 O -0.369 6.369 7 C -0.193 4.193 8 C 0.013 3.987 9 H 0.167 0.833 10 N -0.860 5.860 11 S 2.800 3.200 12 O -0.974 6.974 13 O -0.996 6.996 14 N -0.833 5.833 15 C -0.051 4.051 16 C 0.168 3.832 17 H 0.044 0.956 18 C -0.201 4.201 19 C -0.564 4.564 20 H 0.101 0.899 21 C -0.183 4.183 22 N -0.561 5.561 23 Si 0.782 3.218 24 H -0.189 1.189 25 H -0.226 1.226 26 H -0.195 1.195 27 C 0.297 3.703 28 O -0.357 6.357 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.163 0.837 37 H 0.179 0.821 38 H 0.265 0.735 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.034 0.966 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.877 13.651 -11.691 18.202 hybrid contribution -0.439 0.210 1.115 1.216 sum -3.316 13.861 -10.577 17.748 Atomic orbital electron populations 1.22130 0.92791 1.02597 1.04362 1.21628 0.96215 0.94665 0.86573 1.22117 1.01519 0.93722 1.04316 1.47065 1.46399 1.27713 1.09996 1.21069 0.78539 0.84387 0.83425 1.90737 1.36668 1.27443 1.82015 1.23056 1.03411 0.95351 0.97493 1.21562 1.02911 0.83594 0.90639 0.83304 1.55821 1.25023 1.18603 1.86505 1.01529 0.72910 0.72760 0.72842 1.93614 1.74011 1.86604 1.43171 1.93562 1.71256 1.49292 1.85492 1.57598 1.29625 1.68825 1.27301 1.21523 0.85168 0.96022 1.02430 1.18440 0.94514 0.91943 0.78275 0.95557 1.21971 0.99152 0.97977 1.01016 1.21638 1.48588 0.94900 0.91268 0.89939 1.25681 0.94888 0.97076 1.00655 1.70024 1.49172 1.18847 1.18034 0.85640 0.78989 0.79419 0.77703 1.18892 1.22596 1.19471 1.21655 0.76568 0.79149 0.92944 1.90822 1.51029 1.56999 1.36803 0.91791 0.88575 0.92823 0.88104 0.88681 0.91795 0.92189 0.83692 0.82089 0.73532 0.93151 0.90553 0.89456 0.96588 0.91280 0.93581 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.17 71.98 0.66 -1.96 16 2 C 0.11 2.01 3.31 44.99 0.15 2.15 16 3 C -0.16 -2.40 9.17 71.98 0.66 -1.74 16 4 N -0.57 -11.82 2.48 -733.78 -1.82 -13.64 16 5 C 0.54 10.68 7.43 88.11 0.65 11.33 16 6 O -0.50 -11.88 14.82 -2.85 -0.04 -11.92 16 7 C -0.15 -2.49 6.81 30.58 0.21 -2.28 16 8 C 0.12 2.71 3.63 44.86 0.16 2.87 16 9 H 0.15 2.81 6.20 -2.38 -0.01 2.79 16 10 N -1.10 -29.28 5.58 -169.93 -0.95 -30.23 16 11 S 2.79 100.66 6.02 -56.49 -0.34 100.32 16 12 O -0.99 -38.70 16.67 -127.61 -2.13 -40.82 16 13 O -1.01 -44.40 16.70 -128.00 -2.14 -46.54 16 14 N -0.99 -36.14 3.12 -520.44 -1.62 -37.76 16 15 C 0.09 2.76 9.11 127.77 1.16 3.92 16 16 C 0.27 12.23 2.62 44.25 0.12 12.35 16 17 H 0.03 1.37 6.91 -2.39 -0.02 1.35 16 18 C -0.14 -6.42 8.97 71.98 0.65 -5.77 16 19 C -0.52 -23.72 7.99 25.60 0.20 -23.51 16 20 H 0.08 3.34 7.33 -2.91 -0.02 3.32 16 21 C 0.02 0.80 5.30 84.66 0.45 1.25 16 22 N -0.92 -48.66 11.32 21.45 0.24 -48.42 16 23 Si 0.96 37.99 29.54 68.60 2.03 40.02 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 25 H -0.30 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 27 C 0.51 12.75 7.73 87.99 0.68 13.43 16 28 O -0.49 -15.82 16.93 -2.86 -0.05 -15.86 16 29 H 0.06 1.20 6.64 -2.39 -0.02 1.18 16 30 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 1.93 7.41 -2.39 -0.02 1.91 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.13 6.65 -2.38 -0.02 1.11 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.15 2.16 7.81 -2.38 -0.02 2.14 16 37 H 0.16 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.43 9.72 8.68 -96.74 -0.84 8.88 16 39 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.08 1.79 6.18 -2.39 -0.01 1.78 16 41 H 0.09 2.51 7.02 -2.39 -0.02 2.49 16 42 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 3.49 6.07 -2.39 -0.01 3.47 16 44 H 0.05 1.91 7.67 -2.38 -0.02 1.89 16 45 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 Total: -1.00 -69.75 375.62 -0.87 -70.62 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.19 Total: 22.19 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 5.75 Total: 12.05 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -4.15 Total: -130.05 kcal Atomic # 8 Polarization: -110.79 SS G_CDS: -4.36 Total: -115.15 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 16 Polarization: 100.66 SS G_CDS: -0.34 Total: 100.32 kcal Total: -69.75 -0.87 -70.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330425278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.489 kcal (2) G-P(sol) polarization free energy of solvation -69.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds