Wall clock time and date at job start Wed Apr 1 2020 06:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46708 * 2 1 4 4 N 1.46499 * 109.47489 * 119.99810 * 2 1 3 5 5 C 1.33875 * 122.76225 * 300.03199 * 4 2 1 6 6 O 1.21225 * 125.39860 * 0.02562 * 5 4 2 7 7 C 1.51319 * 109.20346 * 179.97438 * 5 4 2 8 8 C 1.54228 * 103.55750 * 359.97438 * 7 5 4 9 9 H 1.08994 * 110.61073 * 241.32775 * 8 7 5 10 10 N 1.46500 * 110.60307 * 118.51836 * 8 7 5 11 11 S 1.65602 * 119.99895 * 147.14976 * 10 8 7 12 12 O 1.42096 * 106.39989 * 311.46066 * 11 10 8 13 13 O 1.42099 * 106.39950 * 178.53896 * 11 10 8 14 14 N 1.65593 * 107.21715 * 65.00051 * 11 10 8 15 15 C 1.46499 * 120.00218 * 269.99907 * 14 11 10 16 16 C 1.46510 * 120.00143 * 89.99977 * 14 11 10 17 17 H 1.08998 * 109.46477 * 0.02562 * 16 14 11 18 18 C 1.53001 * 109.46979 * 239.99784 * 16 14 11 19 19 C 1.50704 * 109.47001 * 119.99713 * 16 14 11 20 20 H 1.08000 * 119.99911 * 5.59514 * 19 16 14 21 21 C 1.37878 * 120.00051 * 185.59189 * 19 16 14 22 22 N 1.31509 * 120.00094 * 196.69148 * 21 19 16 23 23 Si 1.86804 * 119.99586 * 16.69416 * 21 19 16 24 24 H 1.48501 * 109.46787 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.47138 * 59.99786 * 23 21 19 26 26 H 1.48502 * 109.46810 * 299.99643 * 23 21 19 27 27 C 1.34225 * 122.70650 * 119.92198 * 4 2 1 28 28 O 1.21223 * 125.59116 * 0.02562 * 27 4 2 29 29 H 1.08996 * 109.46581 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46859 * 299.99565 * 1 2 3 31 31 H 1.08996 * 109.47307 * 60.00109 * 1 2 3 32 32 H 1.09001 * 109.47132 * 240.00704 * 2 1 3 33 33 H 1.09005 * 109.46719 * 179.97438 * 3 2 1 34 34 H 1.08990 * 109.47569 * 299.99993 * 3 2 1 35 35 H 1.08994 * 109.47105 * 60.00585 * 3 2 1 36 36 H 1.09003 * 110.60290 * 241.48103 * 7 5 4 37 37 H 1.08992 * 110.60590 * 118.51818 * 7 5 4 38 38 H 0.97005 * 119.99967 * 327.14476 * 10 8 7 39 39 H 1.08998 * 109.47161 * 270.00560 * 15 14 11 40 40 H 1.09004 * 109.46894 * 30.00255 * 15 14 11 41 41 H 1.09000 * 109.47678 * 149.99974 * 15 14 11 42 42 H 1.09002 * 109.46669 * 186.66829 * 18 16 14 43 43 H 1.09000 * 109.46888 * 306.66823 * 18 16 14 44 44 H 1.08999 * 109.46930 * 66.67358 * 18 16 14 45 45 H 0.96998 * 120.00240 * 354.90265 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7288 -0.2819 2.4377 6 8 1.0471 0.6802 2.7191 7 6 2.3861 -1.2120 3.4339 8 6 3.1129 -2.2403 2.5434 9 1 2.7259 -3.2435 2.7215 10 7 4.5580 -2.1973 2.7805 11 16 5.4590 -3.5812 2.6561 12 8 4.7759 -4.5737 3.4093 13 8 6.8067 -3.2063 2.9059 14 7 5.3944 -4.0676 1.0745 15 6 4.3351 -4.9768 0.6304 16 6 6.3967 -3.5886 0.1192 17 1 7.0977 -2.9277 0.6291 18 6 5.7016 -2.8235 -1.0087 19 6 7.1436 -4.7640 -0.4569 20 1 6.8376 -5.7705 -0.2127 21 6 8.2175 -4.5543 -1.2958 22 7 8.6622 -5.5340 -2.0521 23 14 9.0409 -2.8787 -1.3579 24 1 10.1616 -2.9137 -2.3316 25 1 9.5646 -2.5342 -0.0117 26 1 8.0505 -1.8559 -1.7804 27 6 2.7914 -1.7863 1.1362 28 8 3.1720 -2.3265 0.1200 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6354 -1.7037 4.0527 37 1 3.0993 -0.6685 4.0535 38 1 4.9871 -1.3582 3.0102 39 1 4.6701 -6.0079 0.7436 40 1 3.4419 -4.8166 1.2343 41 1 4.1049 -4.7826 -0.4172 42 1 6.4304 -2.5697 -1.7785 43 1 4.9183 -3.4460 -1.4410 44 1 5.2610 -1.9097 -0.6101 45 1 8.2836 -6.4229 -1.9666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330425283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:49:01 Heat of formation + Delta-G solvation = -127.066518 kcal Electronic energy + Delta-G solvation = -31367.805942 eV Core-core repulsion = 27127.226907 eV Total energy + Delta-G solvation = -4240.579035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.28238 -38.86183 -36.98452 -36.47044 -36.35965 -36.17668 -35.47754 -33.40688 -32.52727 -29.89896 -29.75619 -27.58065 -25.97733 -25.74310 -24.54190 -23.28899 -22.21390 -20.73398 -19.56483 -19.22901 -17.70788 -17.52208 -17.46664 -17.26994 -16.79667 -16.66203 -15.71184 -15.22870 -14.99465 -14.50842 -14.47063 -14.25410 -14.07173 -13.77786 -13.60938 -13.38385 -13.24098 -12.99497 -12.87648 -12.51058 -12.27231 -12.08051 -12.03089 -11.81820 -11.74647 -11.71755 -11.69300 -11.66639 -11.46733 -11.32427 -11.14409 -10.77833 -10.39475 -10.26592 -9.97464 -9.90157 -9.71169 -9.57150 -9.10537 -8.36602 -8.02790 -6.44287 -4.06999 0.85235 1.26856 2.17827 2.38193 3.17419 3.37073 3.48095 3.60084 3.69287 3.77420 3.87788 3.98677 4.48316 4.48908 4.51759 4.66110 4.68407 4.78564 4.95217 5.02743 5.16013 5.24035 5.26763 5.40764 5.41403 5.46936 5.56497 5.67400 5.82968 5.86392 6.10087 6.28274 6.47495 6.53747 6.56650 6.62257 6.67480 6.74130 6.99913 7.11009 7.44757 7.48594 7.58647 8.01703 8.39424 8.92151 9.60883 10.94278 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.004484 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.718741 B = 6242.501819 C = 7227.921706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.121 3.879 3 C -0.167 4.167 4 N -0.569 5.569 5 C 0.532 3.468 6 O -0.482 6.482 7 C -0.163 4.163 8 C 0.123 3.877 9 H 0.141 0.859 10 N -1.114 6.114 11 S 2.771 3.229 12 O -0.986 6.986 13 O -0.966 6.966 14 N -0.970 5.970 15 C 0.121 3.879 16 C 0.248 3.752 17 H 0.043 0.957 18 C -0.149 4.149 19 C -0.601 4.601 20 H 0.064 0.936 21 C 0.035 3.965 22 N -0.904 5.904 23 Si 1.034 2.966 24 H -0.283 1.283 25 H -0.277 1.277 26 H -0.273 1.273 27 C 0.498 3.502 28 O -0.429 6.429 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.417 0.583 39 H 0.047 0.953 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.025 0.975 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.242 12.138 7.744 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 C -0.224 4.224 4 N -0.314 5.314 5 C 0.321 3.679 6 O -0.354 6.354 7 C -0.204 4.204 8 C 0.011 3.989 9 H 0.159 0.841 10 N -0.871 5.871 11 S 2.780 3.220 12 O -0.969 6.969 13 O -0.950 6.950 14 N -0.813 5.813 15 C -0.025 4.025 16 C 0.144 3.856 17 H 0.060 0.940 18 C -0.208 4.208 19 C -0.640 4.640 20 H 0.082 0.918 21 C -0.171 4.171 22 N -0.538 5.538 23 Si 0.862 3.138 24 H -0.209 1.209 25 H -0.203 1.203 26 H -0.199 1.199 27 C 0.282 3.718 28 O -0.295 6.295 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.251 0.749 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.825 12.592 7.189 21.463 hybrid contribution -1.226 -0.346 0.462 1.356 sum -17.051 12.245 7.651 22.344 Atomic orbital electron populations 1.22158 0.93606 1.02796 1.03780 1.21409 0.95387 0.94036 0.87129 1.22161 1.01773 0.94777 1.03728 1.47047 1.47158 1.28073 1.09158 1.20656 0.79189 0.84568 0.83525 1.90741 1.36195 1.26507 1.81912 1.22869 1.02378 0.96795 0.98344 1.21388 0.83231 1.02996 0.91317 0.84146 1.56484 1.14512 1.29647 1.86481 1.02338 0.73001 0.72976 0.73702 1.93562 1.76090 1.57331 1.69931 1.93636 1.33119 1.83267 1.84943 1.57304 1.38493 1.57934 1.27544 1.21090 0.87277 0.92777 1.01356 1.18988 0.84994 0.95464 0.86198 0.93955 1.22436 1.00475 0.98089 0.99793 1.22170 1.16065 0.92977 1.32820 0.91812 1.25650 0.94736 1.05048 0.91688 1.70854 1.46197 1.02828 1.33893 0.84235 0.76942 0.75437 0.77204 1.20919 1.20282 1.19900 1.21597 0.77338 0.79811 0.93019 1.90925 1.47691 1.55477 1.35379 0.92156 0.90865 0.90733 0.87498 0.92057 0.90710 0.90901 0.85082 0.85300 0.74872 0.93477 0.93907 0.90458 0.92531 0.92675 0.95575 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 9.17 37.16 0.34 -0.96 16 2 C 0.12 1.12 3.31 -67.93 -0.22 0.89 16 3 C -0.17 -1.43 9.17 37.16 0.34 -1.09 16 4 N -0.57 -5.57 2.48 -108.15 -0.27 -5.83 16 5 C 0.53 4.87 7.42 -11.08 -0.08 4.79 16 6 O -0.48 -5.41 14.82 5.61 0.08 -5.33 16 7 C -0.16 -1.09 6.79 -26.94 -0.18 -1.27 16 8 C 0.12 1.19 3.76 -68.14 -0.26 0.94 16 9 H 0.14 1.24 7.13 -51.93 -0.37 0.87 16 10 N -1.11 -13.25 5.57 -5.07 -0.03 -13.28 16 11 S 2.77 49.08 6.08 -107.50 -0.65 48.43 16 12 O -0.99 -18.34 16.59 -57.17 -0.95 -19.29 16 13 O -0.97 -20.63 16.70 -57.17 -0.95 -21.58 16 14 N -0.97 -19.20 2.79 -115.84 -0.32 -19.53 16 15 C 0.12 2.15 8.13 59.85 0.49 2.63 16 16 C 0.25 5.76 2.21 -69.07 -0.15 5.61 16 17 H 0.04 1.03 5.58 -51.93 -0.29 0.74 16 18 C -0.15 -3.16 7.72 37.16 0.29 -2.87 16 19 C -0.60 -16.52 8.68 -34.44 -0.30 -16.82 16 20 H 0.06 1.88 7.75 -52.49 -0.41 1.47 16 21 C 0.03 0.99 5.30 -17.82 -0.09 0.89 16 22 N -0.90 -27.40 13.70 55.43 0.76 -26.64 16 23 Si 1.03 25.05 26.27 -169.99 -4.47 20.58 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -5.98 5.72 56.52 0.32 -5.65 16 27 C 0.50 5.64 7.74 -10.93 -0.08 5.55 16 28 O -0.43 -6.14 12.53 5.61 0.07 -6.06 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.65 6.64 -51.93 -0.34 0.31 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.11 1.06 7.42 -51.93 -0.39 0.67 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.69 6.65 -51.93 -0.35 0.34 16 36 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.13 0.67 7.81 -51.93 -0.41 0.26 16 38 H 0.42 3.96 8.68 -34.48 -0.30 3.66 16 39 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.04 0.61 7.34 -51.93 -0.38 0.23 16 41 H 0.08 1.40 6.26 -51.93 -0.33 1.07 16 42 H 0.06 1.27 4.80 -51.93 -0.25 1.02 16 43 H 0.05 1.16 6.26 -51.93 -0.32 0.83 16 44 H 0.03 0.49 6.71 -51.93 -0.35 0.14 16 45 H 0.27 8.09 8.73 -40.82 -0.36 7.74 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -35.38 363.42 -7.42 -42.79 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.24 Total: 1.99 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 0.08 Total: -1.72 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: 0.14 Total: -65.28 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -1.75 Total: -52.27 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.47 Total: 20.58 kcal Atomic # 16 Polarization: 49.08 SS G_CDS: -0.65 Total: 48.43 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.38 -7.42 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330425283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.274 kcal (2) G-P(sol) polarization free energy of solvation -35.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds