Wall clock time and date at job start Wed Apr 1 2020 06:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46708 * 2 1 4 4 N 1.46499 * 109.47489 * 119.99810 * 2 1 3 5 5 C 1.33875 * 122.76225 * 300.03199 * 4 2 1 6 6 O 1.21225 * 125.39860 * 0.02562 * 5 4 2 7 7 C 1.51319 * 109.20346 * 179.97438 * 5 4 2 8 8 C 1.54228 * 103.55750 * 359.97438 * 7 5 4 9 9 H 1.08994 * 110.61073 * 241.32775 * 8 7 5 10 10 N 1.46500 * 110.60307 * 118.51836 * 8 7 5 11 11 S 1.65602 * 119.99895 * 147.14976 * 10 8 7 12 12 O 1.42096 * 106.39989 * 311.46066 * 11 10 8 13 13 O 1.42099 * 106.39950 * 178.53896 * 11 10 8 14 14 N 1.65593 * 107.21715 * 65.00051 * 11 10 8 15 15 C 1.46499 * 120.00218 * 269.99907 * 14 11 10 16 16 C 1.46510 * 120.00143 * 89.99977 * 14 11 10 17 17 H 1.08998 * 109.46477 * 0.02562 * 16 14 11 18 18 C 1.53001 * 109.46979 * 239.99784 * 16 14 11 19 19 C 1.50704 * 109.47001 * 119.99713 * 16 14 11 20 20 H 1.08000 * 119.99911 * 5.59514 * 19 16 14 21 21 C 1.37878 * 120.00051 * 185.59189 * 19 16 14 22 22 N 1.31509 * 120.00094 * 196.69148 * 21 19 16 23 23 Si 1.86804 * 119.99586 * 16.69416 * 21 19 16 24 24 H 1.48501 * 109.46787 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.47138 * 59.99786 * 23 21 19 26 26 H 1.48502 * 109.46810 * 299.99643 * 23 21 19 27 27 C 1.34225 * 122.70650 * 119.92198 * 4 2 1 28 28 O 1.21223 * 125.59116 * 0.02562 * 27 4 2 29 29 H 1.08996 * 109.46581 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46859 * 299.99565 * 1 2 3 31 31 H 1.08996 * 109.47307 * 60.00109 * 1 2 3 32 32 H 1.09001 * 109.47132 * 240.00704 * 2 1 3 33 33 H 1.09005 * 109.46719 * 179.97438 * 3 2 1 34 34 H 1.08990 * 109.47569 * 299.99993 * 3 2 1 35 35 H 1.08994 * 109.47105 * 60.00585 * 3 2 1 36 36 H 1.09003 * 110.60290 * 241.48103 * 7 5 4 37 37 H 1.08992 * 110.60590 * 118.51818 * 7 5 4 38 38 H 0.97005 * 119.99967 * 327.14476 * 10 8 7 39 39 H 1.08998 * 109.47161 * 270.00560 * 15 14 11 40 40 H 1.09004 * 109.46894 * 30.00255 * 15 14 11 41 41 H 1.09000 * 109.47678 * 149.99974 * 15 14 11 42 42 H 1.09002 * 109.46669 * 186.66829 * 18 16 14 43 43 H 1.09000 * 109.46888 * 306.66823 * 18 16 14 44 44 H 1.08999 * 109.46930 * 66.67358 * 18 16 14 45 45 H 0.96998 * 120.00240 * 354.90265 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7288 -0.2819 2.4377 6 8 1.0471 0.6802 2.7191 7 6 2.3861 -1.2120 3.4339 8 6 3.1129 -2.2403 2.5434 9 1 2.7259 -3.2435 2.7215 10 7 4.5580 -2.1973 2.7805 11 16 5.4590 -3.5812 2.6561 12 8 4.7759 -4.5737 3.4093 13 8 6.8067 -3.2063 2.9059 14 7 5.3944 -4.0676 1.0745 15 6 4.3351 -4.9768 0.6304 16 6 6.3967 -3.5886 0.1192 17 1 7.0977 -2.9277 0.6291 18 6 5.7016 -2.8235 -1.0087 19 6 7.1436 -4.7640 -0.4569 20 1 6.8376 -5.7705 -0.2127 21 6 8.2175 -4.5543 -1.2958 22 7 8.6622 -5.5340 -2.0521 23 14 9.0409 -2.8787 -1.3579 24 1 10.1616 -2.9137 -2.3316 25 1 9.5646 -2.5342 -0.0117 26 1 8.0505 -1.8559 -1.7804 27 6 2.7914 -1.7863 1.1362 28 8 3.1720 -2.3265 0.1200 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6354 -1.7037 4.0527 37 1 3.0993 -0.6685 4.0535 38 1 4.9871 -1.3582 3.0102 39 1 4.6701 -6.0079 0.7436 40 1 3.4419 -4.8166 1.2343 41 1 4.1049 -4.7826 -0.4172 42 1 6.4304 -2.5697 -1.7785 43 1 4.9183 -3.4460 -1.4410 44 1 5.2610 -1.9097 -0.6101 45 1 8.2836 -6.4229 -1.9666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330425283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:49:00 Heat of formation + Delta-G solvation = -155.773434 kcal Electronic energy + Delta-G solvation = -31369.050767 eV Core-core repulsion = 27127.226907 eV Total energy + Delta-G solvation = -4241.823861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.05616 -39.71872 -38.47040 -38.01173 -37.28639 -37.09232 -36.98675 -34.59744 -34.25012 -31.55427 -30.63206 -28.22583 -27.28957 -26.81077 -26.52838 -23.97400 -23.01744 -22.47860 -20.72350 -20.15564 -19.57232 -19.01737 -18.55304 -18.16669 -18.12379 -17.56641 -16.94875 -16.25121 -15.99522 -15.78169 -15.38841 -15.30790 -15.19732 -15.07554 -14.87306 -14.65904 -14.44177 -14.12465 -13.97779 -13.75910 -13.60231 -13.43001 -13.32166 -13.23016 -13.12105 -12.92634 -12.88126 -12.77407 -12.47857 -12.43534 -12.38365 -12.21089 -12.07714 -11.75136 -11.53231 -11.12111 -11.01802 -10.74924 -10.58549 -10.41985 -9.79881 -8.67816 -6.32574 -0.51843 0.44540 1.41167 1.44290 1.55135 1.57933 1.70162 1.98864 2.48008 2.48976 2.96740 3.09337 3.11579 3.15128 3.39014 3.80429 3.88374 3.91049 4.01526 4.09946 4.17233 4.30869 4.51305 4.65177 4.66313 4.71115 4.74251 4.77789 4.81264 4.82683 4.91074 4.98391 5.04351 5.12733 5.15570 5.20623 5.34848 5.65177 5.73692 5.82693 5.94017 6.02888 6.08888 6.29854 6.64913 6.75262 7.43650 8.67609 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.004484 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.718741 B = 6242.501819 C = 7227.921706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.114 3.886 3 C -0.160 4.160 4 N -0.568 5.568 5 C 0.533 3.467 6 O -0.501 6.501 7 C -0.147 4.147 8 C 0.117 3.883 9 H 0.155 0.845 10 N -1.095 6.095 11 S 2.792 3.208 12 O -0.995 6.995 13 O -1.004 7.004 14 N -0.983 5.983 15 C 0.121 3.879 16 C 0.251 3.749 17 H 0.039 0.961 18 C -0.135 4.135 19 C -0.600 4.600 20 H 0.028 0.972 21 C -0.016 4.016 22 N -0.937 5.937 23 Si 1.064 2.936 24 H -0.286 1.286 25 H -0.270 1.270 26 H -0.233 1.233 27 C 0.499 3.501 28 O -0.463 6.463 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.165 0.835 37 H 0.152 0.848 38 H 0.432 0.568 39 H 0.027 0.973 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.072 14.599 9.187 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 C -0.218 4.218 4 N -0.313 5.313 5 C 0.323 3.677 6 O -0.374 6.374 7 C -0.188 4.188 8 C 0.005 3.995 9 H 0.172 0.828 10 N -0.858 5.858 11 S 2.801 3.199 12 O -0.978 6.978 13 O -0.989 6.989 14 N -0.824 5.824 15 C -0.025 4.025 16 C 0.145 3.855 17 H 0.057 0.943 18 C -0.194 4.194 19 C -0.640 4.640 20 H 0.046 0.954 21 C -0.215 4.215 22 N -0.573 5.573 23 Si 0.885 3.115 24 H -0.212 1.212 25 H -0.195 1.195 26 H -0.157 1.157 27 C 0.284 3.716 28 O -0.331 6.331 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.182 0.818 37 H 0.169 0.831 38 H 0.270 0.730 39 H 0.046 0.954 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.689 15.059 8.649 24.789 hybrid contribution -0.802 -1.140 0.100 1.397 sum -18.491 13.919 8.750 24.743 Atomic orbital electron populations 1.22094 0.92596 1.02816 1.04058 1.21523 0.96207 0.94151 0.86816 1.22108 1.01157 0.94446 1.04081 1.47115 1.46741 1.27638 1.09793 1.21037 0.78688 0.84408 0.83559 1.90748 1.37150 1.27474 1.82070 1.22965 1.02964 0.95410 0.97461 1.21697 0.81679 1.04916 0.91209 0.82805 1.55848 1.15426 1.28676 1.85843 1.01482 0.72310 0.73433 0.72673 1.93550 1.76050 1.58538 1.69668 1.93582 1.36028 1.84011 1.85237 1.57249 1.38408 1.59086 1.27677 1.21141 0.88006 0.91490 1.01832 1.18713 0.85742 0.93639 0.87391 0.94292 1.22225 0.99788 0.98831 0.98512 1.22407 1.16158 0.93128 1.32287 0.95371 1.26962 0.95468 1.07634 0.91421 1.70977 1.47514 1.02715 1.36102 0.83888 0.77053 0.72903 0.77608 1.21177 1.19511 1.15668 1.21807 0.76896 0.79701 0.93155 1.90912 1.49157 1.56497 1.36577 0.92234 0.91745 0.89266 0.88289 0.92861 0.89193 0.91716 0.81757 0.83058 0.73049 0.95395 0.90209 0.91130 0.93718 0.92999 0.92916 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.17 71.98 0.66 -1.52 16 2 C 0.11 1.88 3.31 44.99 0.15 2.03 16 3 C -0.16 -2.45 9.17 71.98 0.66 -1.79 16 4 N -0.57 -9.63 2.48 -733.73 -1.82 -11.45 16 5 C 0.53 8.01 7.42 87.99 0.65 8.66 16 6 O -0.50 -9.89 14.82 -2.86 -0.04 -9.94 16 7 C -0.15 -1.29 6.79 30.46 0.21 -1.09 16 8 C 0.12 1.82 3.76 44.86 0.17 1.99 16 9 H 0.15 2.08 7.13 -2.39 -0.02 2.06 16 10 N -1.10 -22.49 5.57 -169.95 -0.95 -23.43 16 11 S 2.79 93.92 6.08 -56.49 -0.34 93.58 16 12 O -0.99 -34.97 16.59 -128.00 -2.12 -37.10 16 13 O -1.00 -41.76 16.70 -128.00 -2.14 -43.90 16 14 N -0.98 -38.10 2.79 -520.42 -1.45 -39.56 16 15 C 0.12 4.23 8.13 127.77 1.04 5.27 16 16 C 0.25 11.50 2.21 44.24 0.10 11.60 16 17 H 0.04 1.84 5.58 -2.39 -0.01 1.83 16 18 C -0.13 -5.51 7.72 71.98 0.56 -4.95 16 19 C -0.60 -33.80 8.68 25.60 0.22 -33.58 16 20 H 0.03 1.74 7.75 -2.91 -0.02 1.72 16 21 C -0.02 -0.93 5.30 84.66 0.45 -0.48 16 22 N -0.94 -58.73 13.70 21.45 0.29 -58.44 16 23 Si 1.06 49.93 26.27 68.60 1.80 51.73 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.23 -9.40 5.72 99.48 0.57 -8.83 16 27 C 0.50 9.92 7.74 87.94 0.68 10.60 16 28 O -0.46 -12.28 12.53 -2.85 -0.04 -12.32 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 1.02 6.64 -2.39 -0.02 1.01 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 1.81 7.42 -2.39 -0.02 1.79 16 33 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.11 6.65 -2.39 -0.02 1.09 16 36 H 0.16 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.15 0.77 7.81 -2.39 -0.02 0.75 16 38 H 0.43 6.63 8.68 -96.74 -0.84 5.79 16 39 H 0.03 1.05 8.09 -2.39 -0.02 1.03 16 40 H 0.08 2.14 7.34 -2.39 -0.02 2.12 16 41 H 0.07 2.55 6.26 -2.39 -0.01 2.53 16 42 H 0.04 1.91 4.80 -2.39 -0.01 1.90 16 43 H 0.05 2.14 6.26 -2.39 -0.01 2.12 16 44 H 0.05 1.86 6.71 -2.39 -0.02 1.85 16 45 H 0.25 16.05 8.73 -92.71 -0.81 15.25 16 Total: -1.00 -79.03 363.42 -1.25 -80.28 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.02 Total: 13.80 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 5.54 Total: -3.25 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -3.93 Total: -132.89 kcal Atomic # 8 Polarization: -98.91 SS G_CDS: -4.34 Total: -103.25 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 1.80 Total: 51.73 kcal Atomic # 16 Polarization: 93.92 SS G_CDS: -0.34 Total: 93.58 kcal Total: -79.03 -1.25 -80.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330425283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.491 kcal (2) G-P(sol) polarization free energy of solvation -79.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds