Wall clock time and date at job start Wed Apr 1 2020 06:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47128 * 2 1 4 4 C 1.50703 * 109.47245 * 120.00083 * 2 1 3 5 5 H 1.07993 * 120.00057 * 120.00077 * 4 2 1 6 6 C 1.37882 * 119.99734 * 299.99872 * 4 2 1 7 7 N 1.31520 * 119.99537 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00126 * 0.02562 * 6 4 2 9 9 H 1.48492 * 109.47232 * 89.99826 * 8 6 4 10 10 H 1.48503 * 109.46834 * 210.00003 * 8 6 4 11 11 H 1.48499 * 109.46985 * 329.99407 * 8 6 4 12 12 N 1.46497 * 109.47271 * 240.00310 * 2 1 3 13 13 C 1.46506 * 119.99738 * 299.99773 * 12 2 1 14 14 S 1.65602 * 120.00241 * 119.99715 * 12 2 1 15 15 O 1.42098 * 106.39870 * 336.46097 * 14 12 2 16 16 O 1.42098 * 106.40108 * 203.53991 * 14 12 2 17 17 N 1.65596 * 107.21687 * 89.99786 * 14 12 2 18 18 C 1.46504 * 119.99716 * 65.00369 * 17 14 12 19 19 C 1.53005 * 109.47099 * 165.00027 * 18 17 14 20 20 N 1.46494 * 109.47211 * 180.02562 * 19 18 17 21 21 C 1.34143 * 118.70833 * 89.99506 * 20 19 18 22 22 O 1.21225 * 119.35859 * 359.48265 * 21 20 19 23 23 C 1.50588 * 121.28214 * 179.49678 * 21 20 19 24 24 C 1.53245 * 109.15898 * 29.07612 * 23 21 20 25 25 C 1.53244 * 108.72232 * 304.29124 * 24 23 21 26 26 C 1.34142 * 118.70413 * 270.01773 * 20 19 18 27 27 O 1.21224 * 119.35979 * 0.52049 * 26 20 19 28 28 H 1.09003 * 109.47269 * 299.99360 * 1 2 3 29 29 H 1.08992 * 109.47373 * 59.99951 * 1 2 3 30 30 H 1.09005 * 109.46422 * 180.02562 * 1 2 3 31 31 H 0.97000 * 119.99446 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47067 * 270.00170 * 13 12 2 33 33 H 1.08999 * 109.46974 * 30.00059 * 13 12 2 34 34 H 1.09003 * 109.47082 * 149.99888 * 13 12 2 35 35 H 0.97003 * 120.00357 * 245.00125 * 17 14 12 36 36 H 1.08994 * 109.47432 * 44.99762 * 18 17 14 37 37 H 1.08996 * 109.47241 * 284.99466 * 18 17 14 38 38 H 1.08994 * 109.47195 * 59.99589 * 19 18 17 39 39 H 1.09008 * 109.46951 * 299.99563 * 19 18 17 40 40 H 1.08995 * 109.52601 * 269.17006 * 23 21 20 41 41 H 1.09000 * 109.57518 * 149.01388 * 23 21 20 42 42 H 1.09002 * 109.62166 * 64.10935 * 24 23 21 43 43 H 1.08998 * 109.62170 * 184.47449 * 24 23 21 44 44 H 1.08993 * 109.52529 * 175.61203 * 25 24 23 45 45 H 1.09003 * 109.52089 * 295.80759 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1373 -0.8596 3.5566 8 14 0.6248 1.2790 2.6541 9 1 -0.8027 0.8727 2.6998 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4921 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 16 2.9704 0.1143 -2.2863 15 8 2.6903 1.4974 -2.1192 16 8 2.8228 -0.5644 -3.5259 17 7 4.5437 -0.1040 -1.8180 18 6 5.1358 -1.4439 -1.8416 19 6 6.6578 -1.3309 -1.7335 20 7 7.2498 -2.6707 -1.7577 21 6 7.5893 -3.2039 -2.9409 22 8 7.3905 -2.5723 -3.9563 23 6 8.2121 -4.5719 -3.0322 24 6 7.7238 -5.4263 -1.8575 25 6 8.0453 -4.6946 -0.5500 26 6 7.4308 -3.3161 -0.5958 27 8 7.0935 -2.7828 0.4392 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0278 0.0005 31 1 1.9027 -0.5284 4.4376 32 1 2.4158 -2.7377 -0.9717 33 1 0.6905 -2.3002 -0.9847 34 1 1.6238 -2.2852 -2.5002 35 1 5.0734 0.6552 -1.5281 36 1 4.8737 -1.9405 -2.7757 37 1 4.7541 -2.0246 -1.0018 38 1 6.9198 -0.8343 -0.7994 39 1 7.0396 -0.7502 -2.5733 40 1 9.2975 -4.4815 -2.9905 41 1 7.9217 -5.0434 -3.9711 42 1 6.6472 -5.5772 -1.9373 43 1 8.2305 -6.3912 -1.8712 44 1 7.6345 -5.2535 0.2907 45 1 9.1261 -4.6077 -0.4376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337987607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:35 Heat of formation + Delta-G solvation = -133.777777 kcal Electronic energy + Delta-G solvation = -30276.912217 eV Core-core repulsion = 26036.042159 eV Total energy + Delta-G solvation = -4240.870057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85692 -38.96074 -36.85313 -36.43051 -36.10943 -35.76293 -35.37609 -34.04686 -32.50130 -30.01000 -29.08783 -28.75583 -25.79726 -24.98852 -24.16737 -23.57372 -22.55579 -20.91411 -19.11392 -18.42042 -17.63151 -17.59740 -17.22090 -17.03675 -16.62285 -16.41615 -15.82485 -15.24038 -14.95689 -14.82775 -14.55507 -14.53375 -14.41908 -14.15847 -13.62783 -13.35980 -13.20411 -12.76643 -12.67672 -12.51523 -12.29353 -12.12965 -11.98012 -11.92618 -11.73961 -11.66843 -11.54424 -11.47625 -11.41245 -11.22685 -11.03979 -10.47453 -10.41124 -10.31223 -10.12533 -9.90359 -9.60806 -9.43953 -9.20330 -8.63847 -8.11335 -6.13504 -4.14692 1.11849 1.35949 2.27753 2.58916 3.24233 3.36952 3.38381 3.41303 3.67371 4.01988 4.18130 4.21587 4.31345 4.35256 4.71745 4.75094 4.88529 4.93768 4.98155 5.17270 5.18442 5.22679 5.34908 5.35661 5.37372 5.52015 5.54158 5.63677 5.82593 6.06005 6.11719 6.19486 6.27480 6.39566 6.53594 6.56131 6.78599 6.85128 7.13411 7.26698 7.32219 7.41087 7.58590 7.64752 8.45282 8.90103 9.46985 10.98878 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.003851 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.427330 B = 7269.797111 C = 8563.895734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.239 3.761 3 H 0.057 0.943 4 C -0.526 4.526 5 H 0.082 0.918 6 C 0.076 3.924 7 N -0.892 5.892 8 Si 0.877 3.123 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.984 5.984 13 C 0.098 3.902 14 S 2.788 3.212 15 O -0.981 6.981 16 O -0.992 6.992 17 N -1.122 6.122 18 C 0.115 3.885 19 C 0.087 3.913 20 N -0.564 5.564 21 C 0.518 3.482 22 O -0.497 6.497 23 C -0.141 4.141 24 C -0.127 4.127 25 C -0.140 4.140 26 C 0.512 3.488 27 O -0.480 6.480 28 H 0.049 0.951 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.265 0.735 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.414 0.586 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.116 0.884 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.228 -10.101 -10.853 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.075 0.925 4 C -0.565 4.565 5 H 0.100 0.900 6 C -0.127 4.127 7 N -0.530 5.530 8 Si 0.706 3.294 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.825 5.825 13 C -0.048 4.048 14 S 2.796 3.204 15 O -0.965 6.965 16 O -0.975 6.975 17 N -0.881 5.881 18 C -0.013 4.013 19 C -0.036 4.036 20 N -0.308 5.308 21 C 0.308 3.692 22 O -0.369 6.369 23 C -0.181 4.181 24 C -0.164 4.164 25 C -0.179 4.179 26 C 0.301 3.699 27 O -0.350 6.350 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.247 0.753 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.134 0.866 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.547 -9.178 -11.464 19.315 hybrid contribution -0.236 0.853 0.937 1.288 sum 12.311 -8.325 -10.527 18.212 Atomic orbital electron populations 1.22430 0.98861 1.01314 0.99251 1.19095 0.90946 0.93375 0.83170 0.92548 1.21198 1.32639 1.14362 0.88259 0.90009 1.24896 0.95583 0.96505 0.95761 1.69887 1.45078 1.40058 0.97937 0.87026 0.80773 0.84027 0.77546 1.20330 1.22178 1.18632 1.57413 1.64637 1.21618 1.38855 1.21330 1.02144 0.81418 0.99954 1.01649 0.72456 0.73026 0.73284 1.93591 1.83623 1.32393 1.86940 1.93549 1.85893 1.76308 1.41801 1.55828 1.32336 1.14491 1.85446 1.21342 0.92986 0.84451 1.02549 1.21923 0.93239 0.82779 1.05620 1.46574 1.56984 1.18959 1.08330 1.21061 0.76897 0.88878 0.82367 1.90781 1.50099 1.61978 1.34066 1.21950 1.02713 0.91190 1.02198 1.21759 1.03388 0.99486 0.91802 1.22025 1.03295 0.91568 1.01035 1.21209 0.77716 0.88364 0.82643 1.90871 1.45118 1.67140 1.31852 0.93223 0.94636 0.92226 0.92508 0.93561 0.90445 0.91784 0.75264 0.90473 0.90749 0.87696 0.88059 0.87208 0.86789 0.90039 0.88655 0.86578 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 8.65 37.16 0.32 -3.15 16 2 C 0.24 5.62 2.21 -69.08 -0.15 5.47 16 3 H 0.06 1.41 5.97 -51.93 -0.31 1.10 16 4 C -0.53 -14.09 8.95 -34.44 -0.31 -14.39 16 5 H 0.08 2.36 7.89 -52.49 -0.41 1.94 16 6 C 0.08 2.12 5.45 -17.82 -0.10 2.02 16 7 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 8 Si 0.88 21.54 24.37 -169.99 -4.14 17.40 16 9 H -0.28 -6.56 6.87 56.52 0.39 -6.17 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 12 N -0.98 -20.07 3.12 -115.85 -0.36 -20.43 16 13 C 0.10 1.72 9.90 59.85 0.59 2.32 16 14 S 2.79 54.20 6.14 -107.50 -0.66 53.54 16 15 O -0.98 -21.62 16.70 -57.17 -0.95 -22.57 16 16 O -0.99 -20.17 16.21 -57.17 -0.93 -21.10 16 17 N -1.12 -18.36 6.05 -10.61 -0.06 -18.43 16 18 C 0.11 1.74 6.56 -4.04 -0.03 1.71 16 19 C 0.09 1.13 5.09 -4.04 -0.02 1.11 16 20 N -0.56 -6.33 2.53 -115.62 -0.29 -6.62 16 21 C 0.52 5.23 7.47 -11.32 -0.08 5.14 16 22 O -0.50 -6.81 16.45 5.61 0.09 -6.72 16 23 C -0.14 -0.71 6.07 -27.81 -0.17 -0.88 16 24 C -0.13 -0.52 6.07 -26.48 -0.16 -0.68 16 25 C -0.14 -0.82 6.11 -27.61 -0.17 -0.99 16 26 C 0.51 5.67 7.48 -11.12 -0.08 5.58 16 27 O -0.48 -7.62 16.45 5.61 0.09 -7.52 16 28 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.21 6.66 -51.93 -0.35 0.86 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.33 6.43 -51.93 -0.33 1.00 16 34 H 0.06 1.02 7.02 -51.93 -0.36 0.65 16 35 H 0.41 5.94 8.65 -34.47 -0.30 5.64 16 36 H 0.08 1.18 7.75 -51.93 -0.40 0.78 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.10 1.38 7.30 -51.93 -0.38 1.00 16 39 H 0.10 1.24 7.29 -51.92 -0.38 0.86 16 40 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 44 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -37.51 372.33 -7.57 -45.09 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.38 Total: 4.25 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.36 Total: 3.26 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: 0.06 Total: -71.24 kcal Atomic # 8 Polarization: -56.22 SS G_CDS: -1.70 Total: -57.91 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.40 kcal Atomic # 16 Polarization: 54.20 SS G_CDS: -0.66 Total: 53.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.51 -7.57 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337987607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.689 kcal (2) G-P(sol) polarization free energy of solvation -37.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds