Wall clock time and date at job start Wed Apr 1 2020 06:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47128 * 2 1 4 4 C 1.50703 * 109.47245 * 120.00083 * 2 1 3 5 5 H 1.07993 * 120.00057 * 120.00077 * 4 2 1 6 6 C 1.37882 * 119.99734 * 299.99872 * 4 2 1 7 7 N 1.31520 * 119.99537 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00126 * 0.02562 * 6 4 2 9 9 H 1.48492 * 109.47232 * 89.99826 * 8 6 4 10 10 H 1.48503 * 109.46834 * 210.00003 * 8 6 4 11 11 H 1.48499 * 109.46985 * 329.99407 * 8 6 4 12 12 N 1.46497 * 109.47271 * 240.00310 * 2 1 3 13 13 C 1.46506 * 119.99738 * 299.99773 * 12 2 1 14 14 S 1.65602 * 120.00241 * 119.99715 * 12 2 1 15 15 O 1.42098 * 106.39870 * 336.46097 * 14 12 2 16 16 O 1.42098 * 106.40108 * 203.53991 * 14 12 2 17 17 N 1.65596 * 107.21687 * 89.99786 * 14 12 2 18 18 C 1.46504 * 119.99716 * 65.00369 * 17 14 12 19 19 C 1.53005 * 109.47099 * 165.00027 * 18 17 14 20 20 N 1.46494 * 109.47211 * 180.02562 * 19 18 17 21 21 C 1.34143 * 118.70833 * 89.99506 * 20 19 18 22 22 O 1.21225 * 119.35859 * 359.48265 * 21 20 19 23 23 C 1.50588 * 121.28214 * 179.49678 * 21 20 19 24 24 C 1.53245 * 109.15898 * 29.07612 * 23 21 20 25 25 C 1.53244 * 108.72232 * 304.29124 * 24 23 21 26 26 C 1.34142 * 118.70413 * 270.01773 * 20 19 18 27 27 O 1.21224 * 119.35979 * 0.52049 * 26 20 19 28 28 H 1.09003 * 109.47269 * 299.99360 * 1 2 3 29 29 H 1.08992 * 109.47373 * 59.99951 * 1 2 3 30 30 H 1.09005 * 109.46422 * 180.02562 * 1 2 3 31 31 H 0.97000 * 119.99446 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47067 * 270.00170 * 13 12 2 33 33 H 1.08999 * 109.46974 * 30.00059 * 13 12 2 34 34 H 1.09003 * 109.47082 * 149.99888 * 13 12 2 35 35 H 0.97003 * 120.00357 * 245.00125 * 17 14 12 36 36 H 1.08994 * 109.47432 * 44.99762 * 18 17 14 37 37 H 1.08996 * 109.47241 * 284.99466 * 18 17 14 38 38 H 1.08994 * 109.47195 * 59.99589 * 19 18 17 39 39 H 1.09008 * 109.46951 * 299.99563 * 19 18 17 40 40 H 1.08995 * 109.52601 * 269.17006 * 23 21 20 41 41 H 1.09000 * 109.57518 * 149.01388 * 23 21 20 42 42 H 1.09002 * 109.62166 * 64.10935 * 24 23 21 43 43 H 1.08998 * 109.62170 * 184.47449 * 24 23 21 44 44 H 1.08993 * 109.52529 * 175.61203 * 25 24 23 45 45 H 1.09003 * 109.52089 * 295.80759 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1373 -0.8596 3.5566 8 14 0.6248 1.2790 2.6541 9 1 -0.8027 0.8727 2.6998 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4921 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 16 2.9704 0.1143 -2.2863 15 8 2.6903 1.4974 -2.1192 16 8 2.8228 -0.5644 -3.5259 17 7 4.5437 -0.1040 -1.8180 18 6 5.1358 -1.4439 -1.8416 19 6 6.6578 -1.3309 -1.7335 20 7 7.2498 -2.6707 -1.7577 21 6 7.5893 -3.2039 -2.9409 22 8 7.3905 -2.5723 -3.9563 23 6 8.2121 -4.5719 -3.0322 24 6 7.7238 -5.4263 -1.8575 25 6 8.0453 -4.6946 -0.5500 26 6 7.4308 -3.3161 -0.5958 27 8 7.0935 -2.7828 0.4392 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0278 0.0005 31 1 1.9027 -0.5284 4.4376 32 1 2.4158 -2.7377 -0.9717 33 1 0.6905 -2.3002 -0.9847 34 1 1.6238 -2.2852 -2.5002 35 1 5.0734 0.6552 -1.5281 36 1 4.8737 -1.9405 -2.7757 37 1 4.7541 -2.0246 -1.0018 38 1 6.9198 -0.8343 -0.7994 39 1 7.0396 -0.7502 -2.5733 40 1 9.2975 -4.4815 -2.9905 41 1 7.9217 -5.0434 -3.9711 42 1 6.6472 -5.5772 -1.9373 43 1 8.2305 -6.3912 -1.8712 44 1 7.6345 -5.2535 0.2907 45 1 9.1261 -4.6077 -0.4376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337987607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:34 Heat of formation + Delta-G solvation = -164.856469 kcal Electronic energy + Delta-G solvation = -30278.259890 eV Core-core repulsion = 26036.042159 eV Total energy + Delta-G solvation = -4242.217731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.70979 -39.90712 -38.50446 -38.15747 -37.28238 -37.04192 -36.53224 -35.01371 -34.55033 -31.83650 -29.87575 -29.65001 -27.41619 -26.96365 -25.07827 -24.39614 -23.39347 -22.73973 -20.57295 -19.32702 -19.09602 -18.69779 -18.48398 -18.40828 -18.08265 -17.71457 -17.30897 -16.82815 -16.04114 -15.77680 -15.66871 -15.56997 -15.38309 -15.34159 -15.11758 -14.82813 -14.54169 -14.21460 -14.02935 -13.86944 -13.62454 -13.52489 -13.32505 -13.26417 -13.13955 -13.11619 -13.03000 -12.90376 -12.78213 -12.22441 -12.16463 -12.03574 -11.95261 -11.48903 -11.38486 -11.26391 -11.15034 -10.95333 -10.77133 -10.63469 -9.83122 -8.30177 -6.34620 -0.45412 0.52740 1.29260 1.37797 1.39197 1.45870 1.77356 1.89896 2.30189 2.46419 3.03702 3.04040 3.27622 3.61024 3.65347 3.74645 3.84958 3.92299 3.95854 4.14259 4.23836 4.32204 4.40394 4.42925 4.55104 4.61222 4.63193 4.65265 4.72638 4.78894 4.85332 4.89950 4.95298 5.03314 5.07834 5.13546 5.23917 5.44037 5.53050 5.73392 5.95233 5.97179 6.32095 6.46587 6.70399 6.73027 7.30371 8.85538 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.003851 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.427330 B = 7269.797111 C = 8563.895734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.240 3.760 3 H 0.045 0.955 4 C -0.517 4.517 5 H 0.049 0.951 6 C 0.024 3.976 7 N -0.938 5.938 8 Si 0.929 3.071 9 H -0.258 1.258 10 H -0.297 1.297 11 H -0.254 1.254 12 N -0.990 5.990 13 C 0.093 3.907 14 S 2.802 3.198 15 O -1.005 7.005 16 O -0.999 6.999 17 N -1.117 6.117 18 C 0.119 3.881 19 C 0.088 3.912 20 N -0.568 5.568 21 C 0.515 3.485 22 O -0.538 6.538 23 C -0.131 4.131 24 C -0.118 4.118 25 C -0.132 4.132 26 C 0.509 3.491 27 O -0.540 6.540 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.266 0.734 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.423 0.577 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.142 0.858 41 H 0.128 0.872 42 H 0.069 0.931 43 H 0.135 0.865 44 H 0.119 0.881 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.809 -11.391 -12.229 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.063 0.937 4 C -0.556 4.556 5 H 0.068 0.932 6 C -0.175 4.175 7 N -0.577 5.577 8 Si 0.756 3.244 9 H -0.184 1.184 10 H -0.225 1.225 11 H -0.178 1.178 12 N -0.831 5.831 13 C -0.052 4.052 14 S 2.810 3.190 15 O -0.990 6.990 16 O -0.982 6.982 17 N -0.879 5.879 18 C -0.009 4.009 19 C -0.036 4.036 20 N -0.311 5.311 21 C 0.308 3.692 22 O -0.413 6.413 23 C -0.170 4.170 24 C -0.155 4.155 25 C -0.171 4.171 26 C 0.302 3.698 27 O -0.414 6.414 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.258 0.742 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.160 0.840 41 H 0.146 0.854 42 H 0.088 0.912 43 H 0.154 0.846 44 H 0.137 0.863 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 13.131 -10.500 -12.878 21.179 hybrid contribution -0.314 1.182 1.303 1.787 sum 12.817 -9.319 -11.576 19.624 Atomic orbital electron populations 1.22381 0.96969 1.02470 1.00074 1.18888 0.92428 0.92468 0.82796 0.93739 1.21341 1.31401 1.13144 0.89755 0.93235 1.25619 0.97040 0.99309 0.95487 1.70017 1.47114 1.42071 0.98537 0.86164 0.80040 0.80724 0.77467 1.18365 1.22455 1.17786 1.57385 1.65248 1.22638 1.37785 1.21497 1.02390 0.79987 1.01321 1.01121 0.72653 0.72204 0.72990 1.93551 1.84292 1.33899 1.87234 1.93536 1.86262 1.76313 1.42100 1.55598 1.31582 1.15477 1.85197 1.21331 0.94505 0.83420 1.01626 1.21749 0.91769 0.84620 1.05433 1.46786 1.56676 1.18256 1.09394 1.22179 0.75710 0.90334 0.80990 1.90763 1.51912 1.63479 1.35150 1.22104 1.04067 0.87550 1.03305 1.21798 1.03248 1.00609 0.89891 1.22176 1.04641 0.87851 1.02429 1.22359 0.76253 0.89787 0.81423 1.90848 1.47954 1.68867 1.33737 0.93780 0.92337 0.91043 0.92455 0.93685 0.89854 0.89770 0.74171 0.90464 0.92559 0.88493 0.87405 0.83996 0.85381 0.91175 0.84639 0.86254 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.67 8.65 71.98 0.62 -6.04 16 2 C 0.24 11.20 2.21 44.25 0.10 11.30 16 3 H 0.04 2.20 5.97 -2.39 -0.01 2.19 16 4 C -0.52 -28.20 8.95 25.60 0.23 -27.97 16 5 H 0.05 2.97 7.89 -2.91 -0.02 2.94 16 6 C 0.02 1.38 5.45 84.66 0.46 1.84 16 7 N -0.94 -57.10 13.96 21.45 0.30 -56.81 16 8 Si 0.93 44.11 24.37 68.60 1.67 45.78 16 9 H -0.26 -11.43 6.87 99.48 0.68 -10.75 16 10 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 11 H -0.25 -11.63 6.53 99.48 0.65 -10.98 16 12 N -0.99 -40.12 3.12 -520.42 -1.62 -41.74 16 13 C 0.09 3.24 9.90 127.77 1.27 4.51 16 14 S 2.80 108.51 6.14 -56.49 -0.35 108.16 16 15 O -1.01 -44.00 16.70 -128.00 -2.14 -46.13 16 16 O -1.00 -39.87 16.21 -128.00 -2.07 -41.95 16 17 N -1.12 -37.35 6.05 -187.49 -1.14 -38.48 16 18 C 0.12 3.74 6.56 86.38 0.57 4.30 16 19 C 0.09 2.37 5.09 86.38 0.44 2.81 16 20 N -0.57 -12.74 2.53 -757.25 -1.91 -14.65 16 21 C 0.52 9.79 7.47 87.72 0.66 10.44 16 22 O -0.54 -14.50 16.45 -2.86 -0.05 -14.55 16 23 C -0.13 -0.88 6.07 29.89 0.18 -0.70 16 24 C -0.12 -0.53 6.07 30.76 0.19 -0.34 16 25 C -0.13 -1.23 6.11 30.02 0.18 -1.04 16 26 C 0.51 11.25 7.48 87.85 0.66 11.91 16 27 O -0.54 -18.00 16.45 -2.86 -0.05 -18.05 16 28 H 0.04 1.88 3.27 -2.39 -0.01 1.87 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.07 2.76 6.66 -2.38 -0.02 2.75 16 31 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 2.78 6.43 -2.39 -0.02 2.76 16 34 H 0.08 2.57 7.02 -2.39 -0.02 2.56 16 35 H 0.42 12.50 8.65 -96.74 -0.84 11.66 16 36 H 0.08 2.41 7.75 -2.39 -0.02 2.39 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.10 2.74 7.30 -2.39 -0.02 2.72 16 39 H 0.11 2.72 7.29 -2.38 -0.02 2.70 16 40 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.14 -0.32 8.14 -2.39 -0.02 -0.34 16 44 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -83.74 372.33 -1.70 -85.44 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.11 Total: 21.96 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 5.55 Total: 11.01 kcal Atomic # 7 Polarization: -147.30 SS G_CDS: -4.37 Total: -151.68 kcal Atomic # 8 Polarization: -116.37 SS G_CDS: -4.31 Total: -120.67 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.67 Total: 45.78 kcal Atomic # 16 Polarization: 108.51 SS G_CDS: -0.35 Total: 108.16 kcal Total: -83.74 -1.70 -85.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337987607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.420 kcal (2) G-P(sol) polarization free energy of solvation -83.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds