Wall clock time and date at job start Wed Apr 1 2020 06:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47121 * 2 1 4 4 C 1.50698 * 109.47101 * 240.00322 * 2 1 3 5 5 H 1.08002 * 120.00023 * 245.45122 * 4 2 1 6 6 C 1.37875 * 120.00428 * 65.45816 * 4 2 1 7 7 N 1.31521 * 119.99726 * 9.59988 * 6 4 2 8 8 Si 1.86798 * 120.00429 * 189.60065 * 6 4 2 9 9 H 1.48499 * 109.47438 * 84.99201 * 8 6 4 10 10 H 1.48505 * 109.47262 * 204.99431 * 8 6 4 11 11 H 1.48497 * 109.46848 * 324.98909 * 8 6 4 12 12 N 1.46494 * 109.47203 * 120.00288 * 2 1 3 13 13 C 1.46499 * 120.00241 * 59.99812 * 12 2 1 14 14 S 1.65600 * 120.00006 * 240.00127 * 12 2 1 15 15 O 1.42099 * 106.40337 * 156.45629 * 14 12 2 16 16 O 1.42100 * 106.40088 * 23.54237 * 14 12 2 17 17 N 1.65593 * 107.22194 * 269.99971 * 14 12 2 18 18 C 1.46502 * 120.00067 * 64.99331 * 17 14 12 19 19 C 1.53001 * 109.47186 * 165.00320 * 18 17 14 20 20 N 1.46502 * 109.47276 * 180.02562 * 19 18 17 21 21 C 1.34146 * 118.70376 * 89.99756 * 20 19 18 22 22 O 1.21227 * 119.36185 * 359.48047 * 21 20 19 23 23 C 1.50591 * 121.27677 * 179.50109 * 21 20 19 24 24 C 1.53243 * 109.15996 * 29.07287 * 23 21 20 25 25 C 1.53239 * 108.72538 * 304.29338 * 24 23 21 26 26 C 1.34139 * 118.70468 * 270.02526 * 20 19 18 27 27 O 1.21227 * 119.36049 * 0.51924 * 26 20 19 28 28 H 1.08995 * 109.47760 * 303.29191 * 1 2 3 29 29 H 1.09002 * 109.47305 * 63.29320 * 1 2 3 30 30 H 1.09004 * 109.47223 * 183.28612 * 1 2 3 31 31 H 0.96998 * 120.00159 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47267 * 270.00194 * 13 12 2 33 33 H 1.08998 * 109.46862 * 30.00380 * 13 12 2 34 34 H 1.09003 * 109.47222 * 150.00157 * 13 12 2 35 35 H 0.97003 * 120.00302 * 245.00302 * 17 14 12 36 36 H 1.08997 * 109.46822 * 45.00809 * 18 17 14 37 37 H 1.08993 * 109.47357 * 285.00879 * 18 17 14 38 38 H 1.08997 * 109.46840 * 60.00500 * 19 18 17 39 39 H 1.09002 * 109.47385 * 300.00276 * 19 18 17 40 40 H 1.08997 * 109.52171 * 269.16942 * 23 21 20 41 41 H 1.08997 * 109.57449 * 149.01189 * 23 21 20 42 42 H 1.09005 * 109.62067 * 64.11115 * 24 23 21 43 43 H 1.09005 * 109.61956 * 184.47271 * 24 23 21 44 44 H 1.09003 * 109.52535 * 175.61039 * 25 24 23 45 45 H 1.09001 * 109.52029 * 295.80595 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5786 -1.6369 -1.1339 6 6 1.7945 -0.1773 -2.4796 7 7 1.2999 1.0360 -2.5935 8 14 2.1748 -1.1784 -4.0102 9 1 1.0222 -2.0607 -4.3237 10 1 2.4218 -0.2620 -5.1524 11 1 3.3829 -2.0082 -3.7713 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 16 2.9703 0.1141 2.2862 15 8 2.8227 -0.5646 3.5258 16 8 2.6902 1.4972 2.1193 17 7 4.5436 -0.1041 1.8181 18 6 5.0138 0.4530 0.5473 19 6 6.5436 0.4451 0.5219 20 7 7.0138 1.0028 -0.7486 21 6 7.2341 2.3236 -0.8302 22 8 7.0310 3.0211 0.1403 23 6 7.7284 2.9565 -2.1041 24 6 7.2382 2.1314 -3.2988 25 6 7.6999 0.6815 -3.1179 26 6 7.2066 0.1728 -1.7846 27 8 6.9794 -1.0102 -1.6486 28 1 -0.3634 0.5640 0.8589 29 1 -0.3634 0.4619 -0.9180 30 1 -0.3634 -1.0260 0.0589 31 1 1.1323 1.4109 -3.4723 32 1 0.7376 -2.1444 1.9992 33 1 1.5295 -2.5968 0.4707 34 1 2.4629 -2.5819 1.9863 35 1 5.1540 -0.6011 2.3851 36 1 4.6541 1.4768 0.4443 37 1 4.6336 -0.1503 -0.2769 38 1 6.9033 -0.5787 0.6249 39 1 6.9239 1.0485 1.3461 40 1 8.8181 2.9800 -2.1002 41 1 7.3424 3.9730 -2.1804 42 1 6.1496 2.1658 -3.3454 43 1 7.6569 2.5367 -4.2200 44 1 7.2925 0.0666 -3.9205 45 1 8.7888 0.6402 -3.1428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337987608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:39 Heat of formation + Delta-G solvation = -146.251683 kcal Electronic energy + Delta-G solvation = -30903.720511 eV Core-core repulsion = 26662.309545 eV Total energy + Delta-G solvation = -4241.410967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.67559 -38.78674 -36.70110 -36.14508 -35.93274 -35.58020 -35.20455 -33.87809 -32.58723 -29.18768 -28.91261 -28.58733 -25.52981 -25.17169 -23.96158 -23.40793 -22.34287 -20.79569 -19.04328 -18.25777 -17.46284 -17.40617 -16.91423 -16.85757 -16.48166 -16.38933 -15.54230 -14.90735 -14.78398 -14.67732 -14.38497 -14.32519 -14.20485 -14.03164 -13.48498 -13.18993 -13.00132 -12.70861 -12.50418 -12.27381 -12.00418 -11.77143 -11.75547 -11.60054 -11.49289 -11.46065 -11.34265 -11.30860 -11.19202 -11.01778 -10.84766 -10.46249 -10.31305 -10.22121 -10.17710 -10.04695 -9.71845 -9.39748 -9.03300 -8.48097 -7.98364 -6.14718 -4.19372 1.26764 1.53211 2.44676 2.77667 3.21540 3.28605 3.33137 3.58375 3.85653 4.18136 4.33247 4.37684 4.39939 4.52092 4.90618 4.95093 5.05808 5.10769 5.16904 5.17111 5.36834 5.42074 5.49270 5.53513 5.56351 5.65786 5.79392 5.87818 6.12041 6.19457 6.34173 6.42914 6.64839 6.79786 6.81964 6.95732 7.05707 7.24462 7.43183 7.46870 7.60869 7.73921 7.75071 7.92546 8.21982 8.84353 9.45502 10.92017 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009071 B = 0.005672 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.058241 B = 4935.467485 C = 6779.414220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.264 3.736 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.064 0.936 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.886 3.114 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.272 1.272 12 N -0.990 5.990 13 C 0.107 3.893 14 S 2.785 3.215 15 O -0.999 6.999 16 O -0.978 6.978 17 N -1.127 6.127 18 C 0.111 3.889 19 C 0.089 3.911 20 N -0.562 5.562 21 C 0.520 3.480 22 O -0.496 6.496 23 C -0.139 4.139 24 C -0.130 4.130 25 C -0.139 4.139 26 C 0.519 3.481 27 O -0.491 6.491 28 H 0.017 0.983 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.264 0.736 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.408 0.592 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.100 0.282 -1.683 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.161 3.839 3 H 0.082 0.918 4 C -0.567 4.567 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.713 3.287 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.197 1.197 12 N -0.833 5.833 13 C -0.039 4.039 14 S 2.793 3.207 15 O -0.983 6.983 16 O -0.962 6.962 17 N -0.885 5.885 18 C -0.017 4.017 19 C -0.034 4.034 20 N -0.305 5.305 21 C 0.310 3.690 22 O -0.368 6.368 23 C -0.179 4.179 24 C -0.167 4.167 25 C -0.179 4.179 26 C 0.309 3.691 27 O -0.362 6.362 28 H 0.036 0.964 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.240 0.760 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.132 0.868 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.393 0.792 -0.614 13.430 hybrid contribution 0.491 -1.032 -1.072 1.567 sum 13.884 -0.240 -1.687 13.988 Atomic orbital electron populations 1.21969 0.98291 0.99176 1.00355 1.18756 0.91548 0.93213 0.80359 0.91775 1.21344 1.36368 1.08753 0.90252 0.91814 1.24904 0.95154 0.94559 0.98841 1.69977 1.44247 1.13700 1.24084 0.86704 0.79044 0.80303 0.82644 1.20485 1.21264 1.19653 1.57703 1.64400 1.21396 1.39816 1.21176 0.98983 0.81964 1.01784 1.01763 0.72532 0.73722 0.72669 1.93546 1.85904 1.76229 1.42615 1.93589 1.83730 1.32371 1.86484 1.55895 1.30811 1.70822 1.31013 1.21465 0.93311 1.00548 0.86355 1.21905 0.95344 1.01128 0.84990 1.46496 1.60563 1.09335 1.14147 1.21037 0.75906 0.81061 0.91027 1.90772 1.47058 1.60592 1.38358 1.21932 1.03428 1.01672 0.90871 1.21782 1.03480 0.92950 0.98519 1.22008 1.03470 0.98290 0.94124 1.21120 0.76003 0.86216 0.85804 1.90775 1.46131 1.16181 1.83158 0.96398 0.90667 0.94622 0.92662 0.93907 0.90270 0.93123 0.76047 0.90082 0.89230 0.88311 0.88373 0.87379 0.86728 0.89551 0.88718 0.86751 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.12 37.15 0.34 -2.90 16 2 C 0.26 6.43 2.49 -69.09 -0.17 6.25 16 3 H 0.06 1.75 6.86 -51.92 -0.36 1.40 16 4 C -0.53 -13.32 7.68 -34.44 -0.26 -13.58 16 5 H 0.06 1.60 7.16 -52.49 -0.38 1.22 16 6 C 0.07 1.77 5.17 -17.82 -0.09 1.68 16 7 N -0.88 -23.76 12.16 55.43 0.67 -23.08 16 8 Si 0.89 19.99 29.55 -169.99 -5.02 14.96 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.99 -20.91 3.12 -115.86 -0.36 -21.27 16 13 C 0.11 1.95 9.21 59.85 0.55 2.50 16 14 S 2.78 56.83 6.09 -107.50 -0.66 56.18 16 15 O -1.00 -21.02 17.21 -57.17 -0.98 -22.00 16 16 O -0.98 -23.33 16.17 -57.17 -0.92 -24.26 16 17 N -1.13 -19.04 6.05 -10.61 -0.06 -19.11 16 18 C 0.11 1.97 6.56 -4.04 -0.03 1.94 16 19 C 0.09 1.28 5.09 -4.04 -0.02 1.26 16 20 N -0.56 -7.59 2.53 -115.62 -0.29 -7.88 16 21 C 0.52 6.65 7.47 -11.32 -0.08 6.57 16 22 O -0.50 -8.07 16.45 5.60 0.09 -7.98 16 23 C -0.14 -1.10 6.07 -27.81 -0.17 -1.26 16 24 C -0.13 -0.96 6.07 -26.48 -0.16 -1.12 16 25 C -0.14 -1.16 6.11 -27.62 -0.17 -1.33 16 26 C 0.52 6.82 7.48 -11.13 -0.08 6.74 16 27 O -0.49 -8.21 16.45 5.60 0.09 -8.12 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 1.89 6.84 -51.93 -0.36 1.54 16 30 H 0.03 0.77 7.56 -51.93 -0.39 0.38 16 31 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.45 6.92 -51.93 -0.36 1.09 16 34 H 0.05 0.81 7.79 -51.93 -0.40 0.40 16 35 H 0.41 5.54 8.65 -34.47 -0.30 5.24 16 36 H 0.08 1.63 7.75 -51.93 -0.40 1.22 16 37 H 0.09 1.79 7.82 -51.93 -0.41 1.39 16 38 H 0.10 1.32 7.30 -51.93 -0.38 0.94 16 39 H 0.10 1.34 7.29 -51.93 -0.38 0.96 16 40 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 381.02 15.07 5.74 5.74 Total: -1.00 -34.94 381.02 -8.68 -43.62 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.62 Total: 6.47 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -0.35 Total: 6.74 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -0.04 Total: -71.34 kcal Atomic # 8 Polarization: -60.64 SS G_CDS: -1.72 Total: -62.36 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 56.83 SS G_CDS: -0.66 Total: 56.18 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.94 -8.68 -43.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337987608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.630 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds