Wall clock time and date at job start Wed Apr 1 2020 06:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47121 * 2 1 4 4 C 1.50698 * 109.47101 * 240.00322 * 2 1 3 5 5 H 1.08002 * 120.00023 * 245.45122 * 4 2 1 6 6 C 1.37875 * 120.00428 * 65.45816 * 4 2 1 7 7 N 1.31521 * 119.99726 * 9.59988 * 6 4 2 8 8 Si 1.86798 * 120.00429 * 189.60065 * 6 4 2 9 9 H 1.48499 * 109.47438 * 84.99201 * 8 6 4 10 10 H 1.48505 * 109.47262 * 204.99431 * 8 6 4 11 11 H 1.48497 * 109.46848 * 324.98909 * 8 6 4 12 12 N 1.46494 * 109.47203 * 120.00288 * 2 1 3 13 13 C 1.46499 * 120.00241 * 59.99812 * 12 2 1 14 14 S 1.65600 * 120.00006 * 240.00127 * 12 2 1 15 15 O 1.42099 * 106.40337 * 156.45629 * 14 12 2 16 16 O 1.42100 * 106.40088 * 23.54237 * 14 12 2 17 17 N 1.65593 * 107.22194 * 269.99971 * 14 12 2 18 18 C 1.46502 * 120.00067 * 64.99331 * 17 14 12 19 19 C 1.53001 * 109.47186 * 165.00320 * 18 17 14 20 20 N 1.46502 * 109.47276 * 180.02562 * 19 18 17 21 21 C 1.34146 * 118.70376 * 89.99756 * 20 19 18 22 22 O 1.21227 * 119.36185 * 359.48047 * 21 20 19 23 23 C 1.50591 * 121.27677 * 179.50109 * 21 20 19 24 24 C 1.53243 * 109.15996 * 29.07287 * 23 21 20 25 25 C 1.53239 * 108.72538 * 304.29338 * 24 23 21 26 26 C 1.34139 * 118.70468 * 270.02526 * 20 19 18 27 27 O 1.21227 * 119.36049 * 0.51924 * 26 20 19 28 28 H 1.08995 * 109.47760 * 303.29191 * 1 2 3 29 29 H 1.09002 * 109.47305 * 63.29320 * 1 2 3 30 30 H 1.09004 * 109.47223 * 183.28612 * 1 2 3 31 31 H 0.96998 * 120.00159 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47267 * 270.00194 * 13 12 2 33 33 H 1.08998 * 109.46862 * 30.00380 * 13 12 2 34 34 H 1.09003 * 109.47222 * 150.00157 * 13 12 2 35 35 H 0.97003 * 120.00302 * 245.00302 * 17 14 12 36 36 H 1.08997 * 109.46822 * 45.00809 * 18 17 14 37 37 H 1.08993 * 109.47357 * 285.00879 * 18 17 14 38 38 H 1.08997 * 109.46840 * 60.00500 * 19 18 17 39 39 H 1.09002 * 109.47385 * 300.00276 * 19 18 17 40 40 H 1.08997 * 109.52171 * 269.16942 * 23 21 20 41 41 H 1.08997 * 109.57449 * 149.01189 * 23 21 20 42 42 H 1.09005 * 109.62067 * 64.11115 * 24 23 21 43 43 H 1.09005 * 109.61956 * 184.47271 * 24 23 21 44 44 H 1.09003 * 109.52535 * 175.61039 * 25 24 23 45 45 H 1.09001 * 109.52029 * 295.80595 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5786 -1.6369 -1.1339 6 6 1.7945 -0.1773 -2.4796 7 7 1.2999 1.0360 -2.5935 8 14 2.1748 -1.1784 -4.0102 9 1 1.0222 -2.0607 -4.3237 10 1 2.4218 -0.2620 -5.1524 11 1 3.3829 -2.0082 -3.7713 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 16 2.9703 0.1141 2.2862 15 8 2.8227 -0.5646 3.5258 16 8 2.6902 1.4972 2.1193 17 7 4.5436 -0.1041 1.8181 18 6 5.0138 0.4530 0.5473 19 6 6.5436 0.4451 0.5219 20 7 7.0138 1.0028 -0.7486 21 6 7.2341 2.3236 -0.8302 22 8 7.0310 3.0211 0.1403 23 6 7.7284 2.9565 -2.1041 24 6 7.2382 2.1314 -3.2988 25 6 7.6999 0.6815 -3.1179 26 6 7.2066 0.1728 -1.7846 27 8 6.9794 -1.0102 -1.6486 28 1 -0.3634 0.5640 0.8589 29 1 -0.3634 0.4619 -0.9180 30 1 -0.3634 -1.0260 0.0589 31 1 1.1323 1.4109 -3.4723 32 1 0.7376 -2.1444 1.9992 33 1 1.5295 -2.5968 0.4707 34 1 2.4629 -2.5819 1.9863 35 1 5.1540 -0.6011 2.3851 36 1 4.6541 1.4768 0.4443 37 1 4.6336 -0.1503 -0.2769 38 1 6.9033 -0.5787 0.6249 39 1 6.9239 1.0485 1.3461 40 1 8.8181 2.9800 -2.1002 41 1 7.3424 3.9730 -2.1804 42 1 6.1496 2.1658 -3.3454 43 1 7.6569 2.5367 -4.2200 44 1 7.2925 0.0666 -3.9205 45 1 8.7888 0.6402 -3.1428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337987608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:38 Heat of formation + Delta-G solvation = -173.621040 kcal Electronic energy + Delta-G solvation = -30904.907336 eV Core-core repulsion = 26662.309545 eV Total energy + Delta-G solvation = -4242.597791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.69164 -39.88413 -38.44838 -37.92439 -37.24835 -36.98415 -36.52514 -35.00682 -34.51107 -31.05048 -29.84969 -29.66217 -27.26120 -27.05580 -25.05961 -24.39851 -23.37287 -22.67332 -20.60078 -19.28177 -18.86763 -18.54301 -18.48210 -18.31545 -18.10896 -17.68662 -17.09826 -16.60485 -15.93723 -15.77585 -15.66263 -15.55400 -15.36688 -15.22505 -14.95013 -14.81717 -14.48986 -13.97838 -13.79319 -13.56720 -13.44616 -13.33377 -13.26829 -13.25904 -13.08917 -12.96169 -12.84202 -12.82798 -12.66355 -12.26863 -12.21850 -12.19790 -11.98499 -11.89099 -11.28408 -11.26093 -11.15432 -10.91906 -10.59106 -10.48278 -9.73426 -8.13094 -6.23906 -0.39921 0.52901 1.41107 1.41869 1.44962 1.53547 1.80390 1.98531 2.43903 2.54026 3.04183 3.16233 3.34225 3.63339 3.69886 3.74263 3.88289 3.93110 4.05893 4.21870 4.27644 4.34205 4.40949 4.59089 4.64376 4.67642 4.76118 4.81236 4.90296 4.90827 4.93616 4.97893 5.04084 5.08427 5.21268 5.21402 5.52756 5.62688 5.79742 5.94388 5.95188 6.10690 6.24757 6.45148 6.72552 6.84220 7.43986 8.93939 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009071 B = 0.005672 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.058241 B = 4935.467485 C = 6779.414220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H 0.026 0.974 4 C -0.530 4.530 5 H 0.064 0.936 6 C 0.026 3.974 7 N -0.913 5.913 8 Si 0.946 3.054 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.272 1.272 12 N -0.996 5.996 13 C 0.099 3.901 14 S 2.799 3.201 15 O -1.001 7.001 16 O -1.016 7.016 17 N -1.111 6.111 18 C 0.121 3.879 19 C 0.092 3.908 20 N -0.568 5.568 21 C 0.513 3.487 22 O -0.540 6.540 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.132 4.132 26 C 0.512 3.488 27 O -0.535 6.535 28 H 0.022 0.978 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.265 0.735 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.425 0.575 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.150 0.850 41 H 0.121 0.879 42 H 0.055 0.945 43 H 0.137 0.863 44 H 0.117 0.883 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.116 -0.552 -3.088 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.167 3.833 3 H 0.044 0.956 4 C -0.569 4.569 5 H 0.082 0.918 6 C -0.175 4.175 7 N -0.551 5.551 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.197 1.197 12 N -0.839 5.839 13 C -0.046 4.046 14 S 2.807 3.193 15 O -0.985 6.985 16 O -0.999 6.999 17 N -0.874 5.874 18 C -0.007 4.007 19 C -0.032 4.032 20 N -0.311 5.311 21 C 0.306 3.694 22 O -0.415 6.415 23 C -0.169 4.169 24 C -0.161 4.161 25 C -0.171 4.171 26 C 0.305 3.695 27 O -0.409 6.409 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.261 0.739 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.168 0.832 41 H 0.139 0.861 42 H 0.074 0.926 43 H 0.155 0.845 44 H 0.135 0.865 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 15.418 -0.058 -2.014 15.549 hybrid contribution -0.125 -0.779 -0.564 0.970 sum 15.293 -0.837 -2.578 15.532 Atomic orbital electron populations 1.21865 0.97748 1.00037 0.99504 1.18438 0.91921 0.91591 0.81396 0.95582 1.21484 1.36119 1.08560 0.90768 0.91823 1.25584 0.95121 0.95285 1.01482 1.70093 1.45307 1.15016 1.24710 0.85760 0.78674 0.78894 0.79522 1.20160 1.20520 1.19669 1.57604 1.64924 1.22613 1.38712 1.21410 1.00606 0.80246 1.02333 1.01171 0.72943 0.72787 0.72362 1.93534 1.86270 1.76014 1.42723 1.93543 1.84589 1.34862 1.86952 1.55490 1.30065 1.70800 1.31024 1.21254 0.95760 0.98066 0.85587 1.21791 0.92642 1.02246 0.86487 1.46724 1.60301 1.10090 1.13974 1.22147 0.74598 0.80375 0.92300 1.90752 1.49098 1.61260 1.40357 1.22079 1.05753 1.01268 0.87830 1.21806 1.01795 0.92444 1.00051 1.22163 1.05862 0.98450 0.90633 1.22194 0.74716 0.85617 0.86986 1.90748 1.48239 1.18009 1.83932 0.95856 0.92729 0.92939 0.92595 0.92533 0.90403 0.90799 0.73904 0.93114 0.91700 0.87074 0.87655 0.83206 0.86067 0.92640 0.84493 0.86510 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 9.12 71.98 0.66 -5.62 16 2 C 0.27 13.51 2.49 44.24 0.11 13.62 16 3 H 0.03 1.51 6.86 -2.38 -0.02 1.49 16 4 C -0.53 -27.13 7.68 25.60 0.20 -26.94 16 5 H 0.06 3.21 7.16 -2.91 -0.02 3.18 16 6 C 0.03 1.35 5.17 84.65 0.44 1.79 16 7 N -0.91 -50.24 12.16 21.45 0.26 -49.97 16 8 Si 0.95 41.03 29.55 68.60 2.03 43.06 16 9 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 N -1.00 -42.36 3.12 -520.47 -1.62 -43.99 16 13 C 0.10 3.50 9.21 127.77 1.18 4.67 16 14 S 2.80 115.87 6.09 -56.49 -0.34 115.52 16 15 O -1.00 -41.44 17.21 -128.00 -2.20 -43.64 16 16 O -1.02 -50.38 16.17 -128.00 -2.07 -52.45 16 17 N -1.11 -38.15 6.05 -187.49 -1.14 -39.28 16 18 C 0.12 4.50 6.56 86.38 0.57 5.07 16 19 C 0.09 2.70 5.09 86.38 0.44 3.13 16 20 N -0.57 -15.27 2.53 -757.23 -1.91 -17.19 16 21 C 0.51 12.86 7.47 87.72 0.66 13.52 16 22 O -0.54 -17.90 16.45 -2.87 -0.05 -17.95 16 23 C -0.13 -1.69 6.07 29.89 0.18 -1.50 16 24 C -0.12 -1.46 6.07 30.76 0.19 -1.27 16 25 C -0.13 -1.81 6.11 30.02 0.18 -1.63 16 26 C 0.51 13.01 7.48 87.85 0.66 13.67 16 27 O -0.53 -17.79 16.45 -2.87 -0.05 -17.84 16 28 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 2.81 6.84 -2.39 -0.02 2.79 16 30 H 0.05 2.26 7.56 -2.39 -0.02 2.24 16 31 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 2.76 6.92 -2.39 -0.02 2.74 16 34 H 0.07 2.24 7.79 -2.39 -0.02 2.22 16 35 H 0.43 11.37 8.65 -96.74 -0.84 10.54 16 36 H 0.05 2.18 7.75 -2.39 -0.02 2.17 16 37 H 0.06 2.73 7.82 -2.39 -0.02 2.71 16 38 H 0.11 2.96 7.30 -2.39 -0.02 2.94 16 39 H 0.11 2.92 7.29 -2.39 -0.02 2.90 16 40 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.14 0.57 8.14 -2.38 -0.02 0.55 16 44 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.15 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -78.89 381.02 -1.47 -80.36 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.18 Total: 24.85 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 5.45 Total: 18.51 kcal Atomic # 7 Polarization: -146.02 SS G_CDS: -4.41 Total: -150.43 kcal Atomic # 8 Polarization: -127.51 SS G_CDS: -4.37 Total: -131.87 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Atomic # 16 Polarization: 115.87 SS G_CDS: -0.34 Total: 115.52 kcal Total: -78.89 -1.47 -80.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337987608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.262 kcal (2) G-P(sol) polarization free energy of solvation -78.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds