Wall clock time and date at job start Wed Apr 1 2020 06:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.44869 * 2 1 4 4 O 1.43003 * 109.44683 * 240.05820 * 2 1 3 5 5 C 1.36058 * 116.70205 * 286.43745 * 4 2 1 6 6 C 1.38436 * 120.57469 * 147.13876 * 5 4 2 7 7 C 1.38222 * 119.97329 * 179.78367 * 6 5 4 8 8 C 1.38938 * 120.17500 * 0.53254 * 7 6 5 9 9 N 1.39855 * 119.98087 * 179.72223 * 8 7 6 10 10 C 1.34778 * 120.00542 * 144.31896 * 9 8 7 11 11 O 1.21389 * 119.99771 * 5.11613 * 10 9 8 12 12 C 1.49331 * 120.00326 * 185.11188 * 10 9 8 13 13 O 1.21362 * 119.99809 * 359.86597 * 12 10 9 14 14 N 1.34769 * 119.99987 * 179.86650 * 12 10 9 15 15 C 1.46507 * 120.00117 * 354.34302 * 14 12 10 16 16 C 1.46504 * 120.00102 * 174.34827 * 14 12 10 17 17 C 1.50703 * 109.47309 * 89.99879 * 16 14 12 18 18 H 1.08007 * 119.99676 * 359.97438 * 17 16 14 19 19 C 1.37872 * 120.00000 * 180.02562 * 17 16 14 20 20 N 1.31516 * 120.00272 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99809 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47160 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47442 * 119.99614 * 21 19 17 24 24 H 1.48503 * 109.46771 * 239.99476 * 21 19 17 25 25 C 1.38930 * 120.03958 * 359.44361 * 8 7 6 26 26 C 1.38421 * 119.76413 * 0.28048 * 25 8 7 27 27 N 1.40208 * 120.68000 * 180.02562 * 26 25 8 28 28 C 1.35088 * 119.00136 * 195.47020 * 27 26 25 29 29 O 1.21293 * 120.13592 * 181.62155 * 28 27 26 30 30 H 1.08997 * 109.47326 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47033 * 299.94390 * 1 2 3 32 32 H 1.09003 * 109.46638 * 59.93970 * 1 2 3 33 33 H 1.07998 * 120.01439 * 0.06223 * 6 5 4 34 34 H 1.07995 * 119.91322 * 180.28051 * 7 6 5 35 35 H 0.97003 * 119.99676 * 324.04499 * 9 8 7 36 36 H 1.08994 * 109.46446 * 84.06576 * 15 14 12 37 37 H 1.09005 * 109.47079 * 204.06328 * 15 14 12 38 38 H 1.09001 * 109.47010 * 324.06454 * 15 14 12 39 39 H 1.09001 * 109.47366 * 209.99650 * 16 14 12 40 40 H 1.09003 * 109.46742 * 329.99653 * 16 14 12 41 41 H 0.96995 * 119.99867 * 179.97438 * 20 19 17 42 42 H 1.08005 * 120.11907 * 180.30793 * 25 8 7 43 43 H 0.97003 * 120.50453 * 15.44640 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0061 -0.6730 -1.1685 5 6 1.8853 -2.0281 -1.1854 6 6 1.6557 -2.6999 -2.3739 7 6 1.5395 -4.0772 -2.3773 8 6 1.6415 -4.7896 -1.1889 9 7 1.5175 -6.1826 -1.1963 10 6 2.2583 -6.9297 -0.3539 11 8 2.9638 -6.3913 0.4742 12 6 2.2113 -8.4199 -0.4394 13 8 1.5040 -8.9582 -1.2657 14 7 2.9541 -9.1668 0.4011 15 6 3.9002 -8.5203 1.3141 16 6 2.8158 -10.6253 0.4019 17 6 3.7866 -11.2225 -0.5841 18 1 4.4409 -10.5798 -1.1545 19 6 3.8387 -12.5891 -0.7587 20 7 3.0417 -13.3717 -0.0644 21 14 5.0426 -13.3293 -1.9803 22 1 5.8209 -12.2433 -2.6283 23 1 5.9691 -14.2461 -1.2687 24 1 4.2943 -14.0871 -3.0153 25 6 1.8724 -4.1196 0.0060 26 6 1.9943 -2.7407 0.0082 27 7 2.2280 -2.0451 1.2029 28 6 2.0305 -0.7091 1.2323 29 8 2.2544 -0.0825 2.2464 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5148 -0.8895 33 1 1.5719 -2.1484 -3.2986 34 1 1.3649 -4.6006 -3.3057 35 1 0.8954 -6.6109 -1.8049 36 1 3.3742 -8.1951 2.2117 37 1 4.6825 -9.2283 1.5879 38 1 4.3475 -7.6567 0.8220 39 1 3.0283 -11.0100 1.3993 40 1 1.7982 -10.8938 0.1180 41 1 3.0782 -14.3331 -0.1875 42 1 1.9568 -4.6725 0.9299 43 1 2.5266 -2.5161 1.9966 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338831997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:33:55 Heat of formation + Delta-G solvation = -113.901643 kcal Electronic energy + Delta-G solvation = -29880.292759 eV Core-core repulsion = 25504.840644 eV Total energy + Delta-G solvation = -4375.452115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.74872 -42.01606 -40.29303 -39.58389 -38.56165 -37.17728 -36.47788 -35.27296 -34.63509 -32.72841 -31.24886 -30.17092 -29.66354 -27.74577 -26.38943 -25.88986 -24.79772 -24.35892 -23.25327 -21.07831 -20.66808 -20.03272 -19.32091 -18.76997 -18.53595 -18.20325 -17.57334 -17.20351 -17.10577 -16.94015 -16.65273 -16.39483 -16.12710 -15.87805 -15.67044 -15.26289 -14.87105 -14.78009 -14.45205 -14.23018 -14.16287 -13.87094 -13.81306 -13.59673 -13.44790 -13.27899 -13.17792 -12.93427 -12.66632 -12.54889 -12.45091 -12.25921 -12.21920 -12.11473 -11.71581 -11.26564 -10.91825 -10.66095 -10.39923 -9.66289 -9.56245 -8.83708 -8.25189 -6.39446 -0.21175 0.06240 0.47891 1.13490 1.27841 1.38986 1.40636 1.52882 1.63070 2.10231 2.18528 2.37180 2.57744 2.62469 2.84980 3.05739 3.26624 3.57668 3.73814 3.88698 4.05434 4.09549 4.19804 4.40034 4.50460 4.58750 4.65561 4.68182 4.74275 4.85458 4.88326 5.00764 5.06285 5.12808 5.14072 5.22610 5.36945 5.41691 5.55392 5.67569 5.70128 5.93850 5.98711 6.20314 6.37697 6.60187 6.64271 6.69833 6.97252 7.31084 8.82599 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.024531 B = 0.002154 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.137001 B =12994.050177 C =13504.323582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.079 3.921 3 H 0.171 0.829 4 O -0.299 6.299 5 C 0.061 3.939 6 C -0.079 4.079 7 C -0.114 4.114 8 C 0.138 3.862 9 N -0.633 5.633 10 C 0.521 3.479 11 O -0.506 6.506 12 C 0.488 3.512 13 O -0.553 6.553 14 N -0.573 5.573 15 C 0.082 3.918 16 C 0.256 3.744 17 C -0.544 4.544 18 H 0.053 0.947 19 C 0.011 3.989 20 N -0.925 5.925 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.271 1.271 24 H -0.278 1.278 25 C -0.132 4.132 26 C 0.100 3.900 27 N -0.656 5.656 28 C 0.493 3.507 29 O -0.548 6.548 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.175 0.825 34 H 0.168 0.832 35 H 0.433 0.567 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.034 0.966 40 H 0.013 0.987 41 H 0.269 0.731 42 H 0.139 0.861 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.368 26.887 -3.684 27.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.020 3.980 3 H 0.188 0.812 4 O -0.214 6.214 5 C 0.014 3.986 6 C -0.098 4.098 7 C -0.135 4.135 8 C 0.043 3.957 9 N -0.280 5.280 10 C 0.303 3.697 11 O -0.381 6.381 12 C 0.270 3.730 13 O -0.432 6.432 14 N -0.304 5.304 15 C -0.060 4.060 16 C 0.135 3.865 17 C -0.582 4.582 18 H 0.072 0.928 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.792 3.208 22 H -0.193 1.193 23 H -0.197 1.197 24 H -0.204 1.204 25 C -0.155 4.155 26 C 0.004 3.996 27 N -0.302 5.302 28 C 0.281 3.719 29 O -0.425 6.425 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.193 0.807 34 H 0.185 0.815 35 H 0.273 0.727 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.052 0.948 40 H 0.031 0.969 41 H 0.078 0.922 42 H 0.156 0.844 43 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -5.097 27.327 -3.148 27.976 hybrid contribution 0.385 -1.612 0.294 1.683 sum -4.713 25.716 -2.854 26.299 Atomic orbital electron populations 1.22340 0.90737 1.03916 1.05927 1.23085 0.97836 0.97784 0.79252 0.81188 1.86329 1.79256 1.15795 1.39997 1.18802 1.04072 0.82870 0.92886 1.20618 0.99018 0.92995 0.97139 1.21111 1.01996 0.93503 0.96894 1.17606 1.02513 0.81522 0.94013 1.43032 1.41039 1.04629 1.39324 1.20074 0.80176 0.87705 0.81720 1.90677 1.39182 1.73415 1.34846 1.20161 0.82215 0.87995 0.82623 1.90724 1.42421 1.74046 1.36028 1.48110 1.37767 1.08486 1.36006 1.22170 0.92355 0.98204 0.93250 1.19055 0.96636 0.73746 0.97014 1.21635 1.20790 0.92329 1.23490 0.92826 1.25808 0.97751 0.97351 0.97900 1.70034 1.39315 1.04929 1.42147 0.85358 0.78534 0.78300 0.78561 1.19268 1.19666 1.20414 1.20645 1.04273 0.91435 0.99109 1.17823 1.04509 0.91621 0.85622 1.43791 1.65279 1.08158 1.12925 1.22030 0.76527 0.81998 0.91363 1.90791 1.51007 1.65647 1.35030 0.92318 0.89472 0.87415 0.80743 0.81467 0.72729 0.91313 0.91175 0.89051 0.94837 0.96852 0.92226 0.84373 0.74204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.30 71.98 0.67 -0.95 16 2 C 0.08 1.06 3.81 29.85 0.11 1.17 16 3 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 4 O -0.30 -4.58 10.18 -94.21 -0.96 -5.54 16 5 C 0.06 1.00 5.85 22.61 0.13 1.13 16 6 C -0.08 -0.97 9.99 22.31 0.22 -0.75 16 7 C -0.11 -1.57 9.96 22.43 0.22 -1.35 16 8 C 0.14 2.74 6.30 38.19 0.24 2.98 16 9 N -0.63 -14.81 5.32 -304.74 -1.62 -16.43 16 10 C 0.52 16.04 7.61 87.23 0.66 16.70 16 11 O -0.51 -15.70 10.70 -3.37 -0.04 -15.74 16 12 C 0.49 19.52 7.72 87.23 0.67 20.19 16 13 O -0.55 -25.23 16.12 -3.28 -0.05 -25.28 16 14 N -0.57 -24.39 2.86 -852.84 -2.44 -26.83 16 15 C 0.08 2.80 9.27 127.77 1.18 3.98 16 16 C 0.26 13.29 5.09 85.63 0.44 13.73 16 17 C -0.54 -30.39 9.39 25.60 0.24 -30.15 16 18 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 19 C 0.01 0.64 5.46 84.65 0.46 1.10 16 20 N -0.92 -53.96 13.29 21.45 0.28 -53.67 16 21 Si 0.97 43.64 29.54 68.60 2.03 45.66 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 C -0.13 -2.81 8.59 22.48 0.19 -2.62 16 26 C 0.10 1.93 6.54 38.13 0.25 2.18 16 27 N -0.66 -12.69 5.47 -302.76 -1.66 -14.34 16 28 C 0.49 9.80 7.19 87.62 0.63 10.43 16 29 O -0.55 -14.30 17.95 -3.07 -0.06 -14.35 16 30 H 0.06 0.68 7.80 -2.39 -0.02 0.66 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.43 8.93 8.30 -92.71 -0.77 8.16 16 36 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 37 H 0.07 2.39 8.03 -2.38 -0.02 2.37 16 38 H 0.09 2.95 5.84 -2.39 -0.01 2.94 16 39 H 0.03 1.76 8.07 -2.39 -0.02 1.75 16 40 H 0.01 0.78 7.51 -2.39 -0.02 0.76 16 41 H 0.27 14.66 8.31 -92.71 -0.77 13.88 16 42 H 0.14 3.30 6.23 -2.91 -0.02 3.29 16 43 H 0.42 7.66 8.89 -92.71 -0.82 6.84 16 Total: -1.00 -72.72 370.26 1.33 -71.39 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -0.50 Total: 17.35 kcal Atomic # 6 Polarization: 31.45 SS G_CDS: 6.33 Total: 37.78 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -5.43 Total: -111.28 kcal Atomic # 8 Polarization: -59.81 SS G_CDS: -1.10 Total: -60.91 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -72.72 1.33 -71.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338831997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.509 kcal (2) G-P(sol) polarization free energy of solvation -72.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds