Wall clock time and date at job start Wed Apr 1 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.69260 * 2 1 4 4 C 1.53536 * 109.57975 * 120.33972 * 2 1 3 5 5 N 1.47293 * 107.59011 * 177.93565 * 4 2 1 6 6 C 1.34779 * 121.14198 * 137.97797 * 5 4 2 7 7 O 1.21396 * 119.99513 * 179.21447 * 6 5 4 8 8 C 1.49330 * 120.00695 * 359.21708 * 6 5 4 9 9 O 1.21365 * 119.99704 * 6.17777 * 8 6 5 10 10 N 1.34776 * 120.00701 * 186.18110 * 8 6 5 11 11 C 1.46497 * 120.00298 * 179.97438 * 10 8 6 12 12 C 1.50697 * 109.47094 * 179.97438 * 11 10 8 13 13 O 1.21300 * 119.99970 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00297 * 180.02562 * 12 11 10 15 15 C 1.37099 * 119.99991 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00230 * 0.02562 * 15 14 12 17 17 C 1.38950 * 119.99439 * 179.97438 * 15 14 12 18 18 N 1.31417 * 119.99752 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00285 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47194 * 90.00145 * 19 17 15 21 21 H 1.48498 * 109.47211 * 210.00001 * 19 17 15 22 22 H 1.48499 * 109.47068 * 329.99934 * 19 17 15 23 23 C 1.40293 * 117.64806 * 317.70515 * 5 4 2 24 24 C 1.38650 * 120.08619 * 193.40038 * 23 5 4 25 25 C 1.38231 * 119.87078 * 180.69622 * 24 23 5 26 26 C 1.38304 * 120.06963 * 0.21587 * 25 24 23 27 27 C 1.38204 * 120.31229 * 359.93889 * 26 25 24 28 28 C 1.38701 * 120.05474 * 0.06250 * 27 26 25 29 29 O 1.35878 * 119.67145 * 180.19774 * 28 27 26 30 30 H 1.08994 * 109.47396 * 180.33853 * 1 2 3 31 31 H 1.09000 * 109.47093 * 300.34204 * 1 2 3 32 32 H 1.09001 * 109.47013 * 60.34082 * 1 2 3 33 33 H 1.08995 * 109.83457 * 297.46047 * 4 2 1 34 34 H 1.09001 * 109.83570 * 58.41237 * 4 2 1 35 35 H 0.96999 * 119.99217 * 359.97438 * 10 8 6 36 36 H 1.09002 * 109.46848 * 299.99659 * 11 10 8 37 37 H 1.08999 * 109.47218 * 59.99702 * 11 10 8 38 38 H 0.96995 * 119.99409 * 359.97438 * 14 12 11 39 39 H 0.96997 * 119.99642 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.06850 * 0.96424 * 24 23 5 41 41 H 1.07996 * 119.96287 * 180.24304 * 25 24 23 42 42 H 1.08001 * 119.84063 * 179.97438 * 26 25 24 43 43 H 1.08001 * 119.97265 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0445 -0.7307 1.2485 5 7 3.5157 -0.7487 1.1790 6 6 4.2680 -0.5110 2.2718 7 8 5.4790 -0.5451 2.1940 8 6 3.6121 -0.2058 3.5781 9 8 2.4054 -0.2816 3.6835 10 7 4.3600 0.1538 4.6401 11 6 3.7163 0.4538 5.9215 12 6 4.7665 0.8258 6.9362 13 8 5.9375 0.8387 6.6202 14 7 4.4047 1.1433 8.1951 15 6 5.3602 1.4813 9.1183 16 1 6.4028 1.4935 8.8368 17 6 4.9871 1.8090 10.4160 18 7 5.9030 2.1325 11.3012 19 14 3.1836 1.7899 10.9025 20 1 2.8205 0.4402 11.4040 21 1 2.9483 2.7946 11.9703 22 1 2.3484 2.1197 9.7197 23 6 4.1055 -1.0276 -0.0630 24 6 5.4561 -1.3317 -0.1384 25 6 6.0358 -1.5917 -1.3661 26 6 5.2710 -1.5442 -2.5175 27 6 3.9249 -1.2386 -2.4487 28 6 3.3340 -0.9761 -1.2216 29 8 2.0091 -0.6804 -1.1625 30 1 -0.3634 -1.0276 0.0061 31 1 -0.3633 0.5191 0.8869 32 1 -0.3633 0.5085 -0.8930 33 1 1.7230 -0.2016 2.1455 34 1 1.6625 -1.7514 1.2634 35 1 5.3244 0.2141 4.5559 36 1 3.0230 1.2852 5.7940 37 1 3.1711 -0.4240 6.2685 38 1 3.4683 1.1326 8.4478 39 1 5.6424 2.3617 12.2070 40 1 6.0533 -1.3696 0.7606 41 1 7.0868 -1.8325 -1.4262 42 1 5.7277 -1.7476 -3.4748 43 1 3.3327 -1.2034 -3.3512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357287185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:54 Heat of formation + Delta-G solvation = -74.332898 kcal Electronic energy + Delta-G solvation = -29873.139885 eV Core-core repulsion = 25499.403600 eV Total energy + Delta-G solvation = -4373.736285 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.94035 -40.31987 -39.01466 -38.43463 -37.78691 -36.12988 -34.68531 -33.93530 -32.95819 -31.89971 -30.81926 -29.50359 -28.56404 -27.07162 -25.36790 -24.28251 -23.16761 -22.87904 -20.87801 -20.40714 -19.71566 -18.88023 -18.61424 -17.82601 -17.75770 -16.83936 -16.41865 -16.32588 -15.81889 -15.54361 -15.38766 -15.19759 -15.06361 -14.58720 -14.32996 -14.13420 -14.01867 -13.97273 -13.48157 -13.28900 -13.25906 -12.87682 -12.65001 -12.50813 -12.31458 -12.28601 -12.16231 -11.99612 -11.55780 -11.31458 -11.27359 -10.92422 -10.72024 -10.43923 -10.13634 -9.78981 -9.43220 -9.30900 -8.90551 -8.75200 -8.39449 -8.13600 -6.48010 -4.01303 0.71517 1.14785 1.42109 1.83331 2.79317 2.87816 2.92091 2.97042 3.05729 3.09437 3.43198 3.56943 3.95915 4.00527 4.11078 4.35907 4.47918 4.52023 4.56409 4.81741 4.97042 5.02896 5.05056 5.12519 5.20019 5.22999 5.28314 5.40600 5.48138 5.55647 5.56587 5.62306 5.69235 5.78550 6.01774 6.11750 6.19658 6.30729 6.56675 6.66572 6.99786 7.12483 7.35687 7.46469 7.75091 7.93241 8.35218 8.73506 9.20411 9.52087 10.63857 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.020394 B = 0.002230 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.602164 B =12551.238439 C =13811.678713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 H 0.077 0.923 4 C 0.034 3.966 5 N -0.527 5.527 6 C 0.512 3.488 7 O -0.488 6.488 8 C 0.512 3.488 9 O -0.522 6.522 10 N -0.664 5.664 11 C 0.102 3.898 12 C 0.433 3.567 13 O -0.574 6.574 14 N -0.572 5.572 15 C -0.312 4.312 16 H 0.123 0.877 17 C 0.046 3.954 18 N -0.871 5.871 19 Si 0.880 3.120 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.267 1.267 23 C 0.071 3.929 24 C -0.115 4.115 25 C -0.131 4.131 26 C -0.104 4.104 27 C -0.132 4.132 28 C 0.103 3.897 29 O -0.312 6.312 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.163 0.837 34 H 0.088 0.912 35 H 0.426 0.574 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.375 0.625 39 H 0.277 0.723 40 H 0.170 0.830 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.283 -6.000 -24.479 27.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 H 0.095 0.905 4 C -0.087 4.087 5 N -0.252 5.252 6 C 0.296 3.704 7 O -0.363 6.363 8 C 0.293 3.707 9 O -0.402 6.402 10 N -0.318 5.318 11 C -0.025 4.025 12 C 0.219 3.781 13 O -0.458 6.458 14 N -0.209 5.209 15 C -0.440 4.440 16 H 0.140 0.860 17 C -0.159 4.159 18 N -0.509 5.509 19 Si 0.706 3.294 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.193 1.193 23 C -0.022 4.022 24 C -0.135 4.135 25 C -0.150 4.150 26 C -0.123 4.123 27 C -0.151 4.151 28 C 0.056 3.944 29 O -0.227 6.227 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.180 0.820 34 H 0.107 0.893 35 H 0.267 0.733 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.208 0.792 39 H 0.087 0.913 40 H 0.187 0.813 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.769 -5.988 -24.396 27.331 hybrid contribution -0.917 0.090 0.695 1.154 sum -11.686 -5.898 -23.701 27.075 Atomic orbital electron populations 1.21745 0.90625 1.03891 1.03684 1.22913 0.96556 0.95461 0.83430 0.90457 1.23959 0.77016 1.04506 1.03174 1.45387 1.08211 1.65030 1.06588 1.20211 0.86839 0.78389 0.84936 1.90623 1.13375 1.48205 1.84051 1.19639 0.86983 0.79193 0.84900 1.90464 1.13478 1.53236 1.82999 1.45509 1.13155 1.64297 1.08886 1.21199 0.95643 1.02745 0.82907 1.19483 0.89362 0.85769 0.83525 1.90591 1.18540 1.57934 1.78714 1.42092 1.08908 1.60524 1.09423 1.19452 0.91596 1.43590 0.89368 0.85965 1.25087 0.98398 0.96855 0.95553 1.69619 1.33114 1.43731 1.04441 0.86659 0.84166 0.79200 0.79373 1.19338 1.19906 1.19250 1.18073 0.94153 1.06378 0.83616 1.22020 0.92911 0.97625 1.00920 1.21110 1.00351 1.01669 0.91837 1.20995 0.92844 0.99554 0.98888 1.20403 0.94951 1.04801 0.94937 1.18573 0.83166 1.00438 0.92255 1.86023 1.20450 1.73621 1.42575 0.91091 0.89587 0.90901 0.82000 0.89339 0.73260 0.88753 0.88725 0.79215 0.91269 0.81306 0.85288 0.85286 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.58 37.16 0.36 -0.53 16 2 C 0.07 0.67 3.59 -26.45 -0.09 0.57 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.03 0.35 5.45 -3.33 -0.02 0.33 16 5 N -0.53 -6.68 3.00 -112.89 -0.34 -7.02 16 6 C 0.51 7.18 7.70 -11.64 -0.09 7.09 16 7 O -0.49 -7.61 13.23 5.46 0.07 -7.54 16 8 C 0.51 7.19 7.79 -11.64 -0.09 7.10 16 9 O -0.52 -7.21 13.09 5.48 0.07 -7.14 16 10 N -0.66 -10.13 5.52 -61.95 -0.34 -10.47 16 11 C 0.10 1.58 6.15 -5.20 -0.03 1.54 16 12 C 0.43 9.04 7.85 -10.99 -0.09 8.95 16 13 O -0.57 -14.22 15.24 5.54 0.08 -14.13 16 14 N -0.57 -12.65 5.09 -10.96 -0.06 -12.71 16 15 C -0.31 -8.34 10.16 -14.93 -0.15 -8.49 16 16 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 17 C 0.05 1.19 5.50 -17.47 -0.10 1.10 16 18 N -0.87 -24.32 13.96 55.50 0.77 -23.55 16 19 Si 0.88 18.24 27.74 -169.99 -4.71 13.53 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.27 -4.98 6.52 56.52 0.37 -4.61 16 23 C 0.07 0.92 6.34 -83.44 -0.53 0.39 16 24 C -0.12 -1.44 8.99 -39.43 -0.35 -1.80 16 25 C -0.13 -1.31 10.05 -39.56 -0.40 -1.71 16 26 C -0.10 -0.91 10.03 -39.57 -0.40 -1.31 16 27 C -0.13 -1.28 9.97 -39.42 -0.39 -1.68 16 28 C 0.10 1.20 6.52 -39.02 -0.25 0.94 16 29 O -0.31 -3.41 9.97 -19.36 -0.19 -3.61 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.16 1.71 4.48 -54.44 -0.24 1.46 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.43 7.07 6.92 -40.82 -0.28 6.79 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.37 7.16 5.76 -40.82 -0.24 6.92 16 39 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.17 2.33 4.98 -53.24 -0.27 2.07 16 41 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -31.68 362.24 -6.62 -38.30 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -4.81 Total: 16.38 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -2.63 Total: 12.50 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.04 Total: -53.75 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: 0.04 Total: -32.42 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -4.71 Total: 13.53 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.68 -6.62 -38.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357287185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.035 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds