Wall clock time and date at job start Wed Apr 1 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.69260 * 2 1 4 4 C 1.53536 * 109.57975 * 120.33972 * 2 1 3 5 5 N 1.47293 * 107.59011 * 177.93565 * 4 2 1 6 6 C 1.34779 * 121.14198 * 137.97797 * 5 4 2 7 7 O 1.21396 * 119.99513 * 179.21447 * 6 5 4 8 8 C 1.49330 * 120.00695 * 359.21708 * 6 5 4 9 9 O 1.21365 * 119.99704 * 6.17777 * 8 6 5 10 10 N 1.34776 * 120.00701 * 186.18110 * 8 6 5 11 11 C 1.46497 * 120.00298 * 179.97438 * 10 8 6 12 12 C 1.50697 * 109.47094 * 179.97438 * 11 10 8 13 13 O 1.21300 * 119.99970 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00297 * 180.02562 * 12 11 10 15 15 C 1.37099 * 119.99991 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00230 * 0.02562 * 15 14 12 17 17 C 1.38950 * 119.99439 * 179.97438 * 15 14 12 18 18 N 1.31417 * 119.99752 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00285 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47194 * 90.00145 * 19 17 15 21 21 H 1.48498 * 109.47211 * 210.00001 * 19 17 15 22 22 H 1.48499 * 109.47068 * 329.99934 * 19 17 15 23 23 C 1.40293 * 117.64806 * 317.70515 * 5 4 2 24 24 C 1.38650 * 120.08619 * 193.40038 * 23 5 4 25 25 C 1.38231 * 119.87078 * 180.69622 * 24 23 5 26 26 C 1.38304 * 120.06963 * 0.21587 * 25 24 23 27 27 C 1.38204 * 120.31229 * 359.93889 * 26 25 24 28 28 C 1.38701 * 120.05474 * 0.06250 * 27 26 25 29 29 O 1.35878 * 119.67145 * 180.19774 * 28 27 26 30 30 H 1.08994 * 109.47396 * 180.33853 * 1 2 3 31 31 H 1.09000 * 109.47093 * 300.34204 * 1 2 3 32 32 H 1.09001 * 109.47013 * 60.34082 * 1 2 3 33 33 H 1.08995 * 109.83457 * 297.46047 * 4 2 1 34 34 H 1.09001 * 109.83570 * 58.41237 * 4 2 1 35 35 H 0.96999 * 119.99217 * 359.97438 * 10 8 6 36 36 H 1.09002 * 109.46848 * 299.99659 * 11 10 8 37 37 H 1.08999 * 109.47218 * 59.99702 * 11 10 8 38 38 H 0.96995 * 119.99409 * 359.97438 * 14 12 11 39 39 H 0.96997 * 119.99642 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.06850 * 0.96424 * 24 23 5 41 41 H 1.07996 * 119.96287 * 180.24304 * 25 24 23 42 42 H 1.08001 * 119.84063 * 179.97438 * 26 25 24 43 43 H 1.08001 * 119.97265 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0445 -0.7307 1.2485 5 7 3.5157 -0.7487 1.1790 6 6 4.2680 -0.5110 2.2718 7 8 5.4790 -0.5451 2.1940 8 6 3.6121 -0.2058 3.5781 9 8 2.4054 -0.2816 3.6835 10 7 4.3600 0.1538 4.6401 11 6 3.7163 0.4538 5.9215 12 6 4.7665 0.8258 6.9362 13 8 5.9375 0.8387 6.6202 14 7 4.4047 1.1433 8.1951 15 6 5.3602 1.4813 9.1183 16 1 6.4028 1.4935 8.8368 17 6 4.9871 1.8090 10.4160 18 7 5.9030 2.1325 11.3012 19 14 3.1836 1.7899 10.9025 20 1 2.8205 0.4402 11.4040 21 1 2.9483 2.7946 11.9703 22 1 2.3484 2.1197 9.7197 23 6 4.1055 -1.0276 -0.0630 24 6 5.4561 -1.3317 -0.1384 25 6 6.0358 -1.5917 -1.3661 26 6 5.2710 -1.5442 -2.5175 27 6 3.9249 -1.2386 -2.4487 28 6 3.3340 -0.9761 -1.2216 29 8 2.0091 -0.6804 -1.1625 30 1 -0.3634 -1.0276 0.0061 31 1 -0.3633 0.5191 0.8869 32 1 -0.3633 0.5085 -0.8930 33 1 1.7230 -0.2016 2.1455 34 1 1.6625 -1.7514 1.2634 35 1 5.3244 0.2141 4.5559 36 1 3.0230 1.2852 5.7940 37 1 3.1711 -0.4240 6.2685 38 1 3.4683 1.1326 8.4478 39 1 5.6424 2.3617 12.2070 40 1 6.0533 -1.3696 0.7606 41 1 7.0868 -1.8325 -1.4262 42 1 5.7277 -1.7476 -3.4748 43 1 3.3327 -1.2034 -3.3512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357287185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:53 Heat of formation + Delta-G solvation = -98.494569 kcal Electronic energy + Delta-G solvation = -29874.187614 eV Core-core repulsion = 25499.403600 eV Total energy + Delta-G solvation = -4374.784014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.88608 -41.37023 -40.41960 -39.72749 -38.61174 -37.14920 -36.27436 -35.42807 -33.86044 -33.64635 -31.64994 -30.40406 -29.85080 -27.89493 -26.81649 -25.56502 -24.01341 -23.79056 -21.79977 -21.60824 -21.25476 -20.51691 -19.56252 -18.97307 -18.72867 -17.94068 -17.53325 -17.20487 -17.16287 -16.95403 -16.59678 -16.46651 -16.18763 -15.79120 -15.41849 -15.19313 -15.07369 -14.87542 -14.81929 -14.39681 -14.32695 -14.11272 -14.06913 -13.71007 -13.45555 -13.13752 -12.97334 -12.90599 -12.73264 -12.44999 -12.37077 -12.08911 -11.99914 -11.77712 -11.59176 -11.30459 -10.71998 -10.55148 -10.38825 -10.33077 -9.58249 -8.99821 -8.46065 -6.09245 -0.27116 0.32749 0.49024 0.80286 1.31179 1.34797 1.45446 1.75224 1.82096 1.91273 2.18431 2.21188 2.71724 2.75796 2.96648 3.09792 3.32656 3.64233 3.81993 3.87056 3.92782 4.08223 4.25495 4.27239 4.30155 4.33472 4.34162 4.44622 4.52938 4.65619 4.84437 4.94151 4.98037 5.03181 5.20844 5.26011 5.33585 5.45909 5.51418 5.68154 5.81004 5.86352 5.91411 6.27029 6.38128 6.46543 6.61396 6.76994 7.26126 7.76342 8.70386 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.020394 B = 0.002230 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.602164 B =12551.238439 C =13811.678713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.072 3.928 3 H 0.074 0.926 4 C 0.033 3.967 5 N -0.525 5.525 6 C 0.507 3.493 7 O -0.514 6.514 8 C 0.522 3.478 9 O -0.515 6.515 10 N -0.674 5.674 11 C 0.115 3.885 12 C 0.439 3.561 13 O -0.618 6.618 14 N -0.573 5.573 15 C -0.333 4.333 16 H 0.060 0.940 17 C -0.011 4.011 18 N -0.926 5.926 19 Si 0.962 3.038 20 H -0.256 1.256 21 H -0.275 1.275 22 H -0.226 1.226 23 C 0.045 3.955 24 C -0.137 4.137 25 C -0.134 4.134 26 C -0.093 4.093 27 C -0.133 4.133 28 C 0.091 3.909 29 O -0.317 6.317 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.163 0.837 34 H 0.093 0.907 35 H 0.419 0.581 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.394 0.606 39 H 0.281 0.719 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.165 0.835 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.072 -6.519 -26.632 31.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.015 3.985 3 H 0.092 0.908 4 C -0.087 4.087 5 N -0.249 5.249 6 C 0.291 3.709 7 O -0.390 6.390 8 C 0.302 3.698 9 O -0.394 6.394 10 N -0.328 5.328 11 C -0.011 4.011 12 C 0.227 3.773 13 O -0.504 6.504 14 N -0.213 5.213 15 C -0.462 4.462 16 H 0.078 0.922 17 C -0.210 4.210 18 N -0.566 5.566 19 Si 0.782 3.218 20 H -0.180 1.180 21 H -0.201 1.201 22 H -0.149 1.149 23 C -0.049 4.049 24 C -0.157 4.157 25 C -0.153 4.153 26 C -0.111 4.111 27 C -0.151 4.151 28 C 0.044 3.956 29 O -0.232 6.232 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.180 0.820 34 H 0.111 0.889 35 H 0.258 0.742 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.231 0.769 39 H 0.091 0.909 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.182 0.818 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.612 -6.519 -26.596 31.038 hybrid contribution 0.389 0.211 1.183 1.263 sum -14.223 -6.308 -25.413 29.798 Atomic orbital electron populations 1.21777 0.88217 1.04521 1.04837 1.23091 0.98269 0.94823 0.82301 0.90794 1.24073 0.75718 1.04982 1.03884 1.45486 1.09056 1.64052 1.06315 1.20234 0.86681 0.78631 0.85342 1.90628 1.14335 1.49610 1.84440 1.19535 0.86856 0.78815 0.84561 1.90472 1.13046 1.52917 1.82979 1.45541 1.12855 1.65171 1.09233 1.21194 0.93631 1.05108 0.81169 1.20514 0.89945 0.83029 0.83839 1.90583 1.21292 1.58877 1.79632 1.41860 1.08994 1.61246 1.09178 1.19010 0.90233 1.45743 0.91242 0.92181 1.26152 1.04831 0.95406 0.94658 1.69795 1.36503 1.45116 1.05172 0.85401 0.76611 0.79625 0.80182 1.18041 1.20058 1.14903 1.18296 0.94619 1.07952 0.83988 1.21998 0.93090 0.99195 1.01408 1.21392 1.01489 1.01017 0.91397 1.21402 0.92409 0.97478 0.99816 1.20805 0.95604 1.03698 0.95038 1.18850 0.83481 1.00757 0.92521 1.86024 1.20077 1.73794 1.43271 0.90715 0.88076 0.90077 0.82021 0.88858 0.74197 0.85608 0.85747 0.76915 0.90897 0.83261 0.83444 0.81752 0.82535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.58 71.98 0.69 -0.67 16 2 C 0.07 1.19 3.59 30.77 0.11 1.30 16 3 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 4 C 0.03 0.65 5.45 86.41 0.47 1.12 16 5 N -0.52 -13.23 3.00 -629.43 -1.89 -15.12 16 6 C 0.51 14.38 7.70 87.23 0.67 15.06 16 7 O -0.51 -16.78 13.23 -3.39 -0.04 -16.83 16 8 C 0.52 14.10 7.79 87.23 0.68 14.78 16 9 O -0.52 -13.04 13.09 -3.29 -0.04 -13.08 16 10 N -0.67 -20.04 5.52 -468.27 -2.58 -22.62 16 11 C 0.12 3.27 6.15 85.63 0.53 3.80 16 12 C 0.44 18.25 7.85 87.66 0.69 18.94 16 13 O -0.62 -31.83 15.24 -3.09 -0.05 -31.88 16 14 N -0.57 -25.02 5.09 -306.98 -1.56 -26.58 16 15 C -0.33 -18.54 10.16 84.04 0.85 -17.68 16 16 H 0.06 4.01 7.39 -2.91 -0.02 3.98 16 17 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 18 N -0.93 -53.84 13.96 21.66 0.30 -53.54 16 19 Si 0.96 36.42 27.74 68.60 1.90 38.32 16 20 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 21 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 22 H -0.23 -6.99 6.52 99.48 0.65 -6.34 16 23 C 0.04 1.14 6.34 38.14 0.24 1.38 16 24 C -0.14 -3.50 8.99 22.37 0.20 -3.30 16 25 C -0.13 -2.54 10.05 22.28 0.22 -2.32 16 26 C -0.09 -1.39 10.03 22.28 0.22 -1.16 16 27 C -0.13 -2.27 9.97 22.37 0.22 -2.05 16 28 C 0.09 2.01 6.52 22.63 0.15 2.16 16 29 O -0.32 -6.43 9.97 -92.17 -0.92 -7.35 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.16 3.12 4.48 -42.16 -0.19 2.93 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.42 14.21 6.92 -92.71 -0.64 13.56 16 36 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.39 13.92 5.76 -92.71 -0.53 13.38 16 39 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.15 4.39 4.98 -14.87 -0.07 4.32 16 41 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 42 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -74.89 362.24 1.16 -73.73 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -0.37 Total: 43.69 kcal Atomic # 6 Polarization: 24.85 SS G_CDS: 6.42 Total: 31.27 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -5.74 Total: -117.87 kcal Atomic # 8 Polarization: -68.09 SS G_CDS: -1.05 Total: -69.14 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 1.90 Total: 38.32 kcal Total: -74.89 1.16 -73.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357287185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.767 kcal (2) G-P(sol) polarization free energy of solvation -74.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds