Wall clock time and date at job start Wed Apr 1 2020 06:04:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31003 * 1
3 3 C 1.50708 * 119.99852 * 2 1
4 4 O 1.42899 * 109.47009 * 134.72076 * 3 2 1
5 5 C 1.35903 * 116.99595 * 179.97438 * 4 3 2
6 6 C 1.38813 * 120.02093 * 359.73526 * 5 4 3
7 7 C 1.38175 * 120.09977 * 179.71872 * 6 5 4
8 8 C 1.38154 * 120.12674 * 0.54489 * 7 6 5
9 9 C 1.38944 * 120.03195 * 359.73215 * 8 7 6
10 10 N 1.39724 * 120.04605 * 180.02562 * 9 8 7
11 11 C 1.34779 * 120.00065 * 213.33543 * 10 9 8
12 12 O 1.21380 * 119.99845 * 5.28247 * 11 10 9
13 13 C 1.49351 * 120.00164 * 185.27251 * 11 10 9
14 14 O 1.21356 * 120.00220 * 0.02562 * 13 11 10
15 15 N 1.34779 * 120.00164 * 179.97438 * 13 11 10
16 16 C 1.46503 * 120.00168 * 180.02562 * 15 13 11
17 17 C 1.50695 * 109.46911 * 180.02562 * 16 15 13
18 18 O 1.21288 * 120.00276 * 0.02562 * 17 16 15
19 19 N 1.34775 * 119.99973 * 179.97438 * 17 16 15
20 20 C 1.37099 * 120.00424 * 180.02562 * 19 17 16
21 21 H 1.07998 * 119.99459 * 359.97438 * 20 19 17
22 22 C 1.38947 * 119.99891 * 180.02562 * 20 19 17
23 23 N 1.31408 * 120.00644 * 0.02562 * 22 20 19
24 24 Si 1.86807 * 119.99666 * 179.97438 * 22 20 19
25 25 H 1.48504 * 109.46717 * 60.00076 * 24 22 20
26 26 H 1.48499 * 109.46995 * 179.97438 * 24 22 20
27 27 H 1.48492 * 109.47382 * 300.00397 * 24 22 20
28 28 C 1.38572 * 120.01449 * 180.02562 * 5 4 3
29 29 H 1.07998 * 119.99650 * 180.27347 * 1 2 3
30 30 H 1.07998 * 119.99798 * 0.27973 * 1 2 3
31 31 H 1.07999 * 120.00329 * 179.72035 * 2 1 3
32 32 H 1.08994 * 109.46765 * 254.72284 * 3 2 1
33 33 H 1.09005 * 109.46610 * 14.72447 * 3 2 1
34 34 H 1.08007 * 119.95069 * 359.97438 * 6 5 4
35 35 H 1.07994 * 119.94148 * 180.27178 * 7 6 5
36 36 H 1.08005 * 119.98450 * 179.74084 * 8 7 6
37 37 H 0.97007 * 120.00149 * 33.33701 * 10 9 8
38 38 H 0.97003 * 119.99919 * 0.02562 * 15 13 11
39 39 H 1.09001 * 109.47138 * 300.00363 * 16 15 13
40 40 H 1.09000 * 109.46781 * 60.00048 * 16 15 13
41 41 H 0.97008 * 120.00062 * 0.02562 * 19 17 16
42 42 H 0.96995 * 120.00330 * 180.02562 * 23 22 20
43 43 H 1.08004 * 120.06283 * 359.97438 * 28 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3052 0.0000
4 8 3.1227 1.2437 0.9573
5 6 3.9051 2.3477 1.0834
6 6 3.6611 3.4654 0.2971
7 6 4.4520 4.5908 0.4281
8 6 5.4951 4.6037 1.3338
9 6 5.7478 3.4859 2.1195
10 7 6.8023 3.4989 3.0360
11 6 7.4850 2.3657 3.2939
12 8 7.2480 1.3572 2.6614
13 6 8.5331 2.3510 4.3577
14 8 8.7699 3.3593 4.9903
15 7 9.2154 1.2178 4.6160
16 6 10.2432 1.2032 5.6599
17 6 10.8510 -0.1730 5.7472
18 8 10.4642 -1.0547 5.0097
19 7 11.8252 -0.4237 6.6441
20 6 12.3786 -1.6756 6.7232
21 1 12.0335 -2.4609 6.0670
22 6 13.3826 -1.9341 7.6483
23 7 13.8014 -0.9789 8.4477
24 14 14.1361 -3.6400 7.7566
25 1 14.7508 -3.9932 6.4517
26 1 15.1783 -3.6546 8.8143
27 1 13.0787 -4.6281 8.0891
28 6 4.9507 2.3561 1.9927
29 1 -0.5399 -0.9353 0.0045
30 1 -0.5400 0.9353 -0.0046
31 1 1.8501 -0.9353 0.0046
32 1 2.4796 1.4844 -0.9913
33 1 1.3843 2.1168 0.2612
34 1 2.8493 3.4567 -0.4152
35 1 4.2571 5.4605 -0.1818
36 1 6.1145 5.4832 1.4313
37 1 7.0432 4.3234 3.4867
38 1 9.0260 0.4117 4.1106
39 1 11.0196 1.9282 5.4155
40 1 9.7920 1.4630 6.6175
41 1 12.1349 0.2816 7.2337
42 1 14.5025 -1.1594 9.0933
43 1 5.1446 1.4859 2.6023
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000357290900.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:04:46
Heat of formation + Delta-G solvation = -85.585766 kcal
Electronic energy + Delta-G solvation = -28195.970667 eV
Core-core repulsion = 23821.746420 eV
Total energy + Delta-G solvation = -4374.224246 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.136 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.24215 -40.24308 -39.09544 -38.16021 -37.67142 -35.31288 -34.55639 -34.28906
-33.72766 -31.42970 -30.80372 -29.79239 -28.28236 -26.98221 -25.33636 -24.19671
-23.02244 -22.00068 -20.56047 -20.19677 -19.79019 -19.10149 -18.47631 -17.94051
-17.01708 -16.71793 -16.36679 -16.33641 -16.05932 -15.86035 -15.39543 -15.35212
-14.95214 -14.65386 -14.49284 -14.11892 -13.95378 -13.85052 -13.52342 -13.45003
-13.32237 -12.92607 -12.29766 -12.21746 -12.07280 -11.98813 -11.79754 -11.67034
-11.60892 -11.20411 -11.12243 -10.60545 -10.51903 -10.33562 -9.98775 -9.72049
-9.65843 -9.11508 -8.72319 -8.69636 -8.39325 -8.13810 -6.54414 -3.96545
0.76164 1.13524 1.48449 1.58981 2.15122 2.95859 3.08818 3.12920
3.20913 3.24803 3.50426 3.55697 3.68448 4.08203 4.31773 4.43233
4.51708 4.55363 4.69778 4.76547 4.80256 4.86174 4.91799 5.03966
5.13288 5.20029 5.35641 5.44978 5.70642 5.79924 5.85233 5.91118
5.95523 6.02773 6.05124 6.09819 6.13602 6.32675 6.46072 6.80296
7.11031 7.33036 7.43667 7.63571 7.86115 7.99959 8.40881 9.01381
9.34250 9.82120 10.62167
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.015368 B = 0.001750 C = 0.001591
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1821.526712 B =15997.973346 C =17594.145216
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.156 4.156
3 C 0.087 3.913
4 O -0.307 6.307
5 C 0.150 3.850
6 C -0.225 4.225
7 C -0.060 4.060
8 C -0.178 4.178
9 C 0.187 3.813
10 N -0.648 5.648
11 C 0.510 3.490
12 O -0.486 6.486
13 C 0.507 3.493
14 O -0.527 6.527
15 N -0.669 5.669
16 C 0.106 3.894
17 C 0.425 3.575
18 O -0.592 6.592
19 N -0.546 5.546
20 C -0.306 4.306
21 H 0.106 0.894
22 C 0.027 3.973
23 N -0.894 5.894
24 Si 0.935 3.065
25 H -0.272 1.272
26 H -0.283 1.283
27 H -0.272 1.272
28 C -0.155 4.155
29 H 0.108 0.892
30 H 0.099 0.901
31 H 0.122 0.878
32 H 0.073 0.927
33 H 0.068 0.932
34 H 0.128 0.872
35 H 0.131 0.869
36 H 0.131 0.869
37 H 0.425 0.575
38 H 0.424 0.576
39 H 0.092 0.908
40 H 0.092 0.908
41 H 0.396 0.604
42 H 0.275 0.725
43 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.035 12.590 -14.748 29.352
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.174 4.174
3 C 0.012 3.988
4 O -0.221 6.221
5 C 0.104 3.896
6 C -0.244 4.244
7 C -0.078 4.078
8 C -0.199 4.199
9 C 0.092 3.908
10 N -0.295 5.295
11 C 0.292 3.708
12 O -0.358 6.358
13 C 0.286 3.714
14 O -0.405 6.405
15 N -0.324 5.324
16 C -0.021 4.021
17 C 0.210 3.790
18 O -0.478 6.478
19 N -0.181 5.181
20 C -0.436 4.436
21 H 0.124 0.876
22 C -0.176 4.176
23 N -0.534 5.534
24 Si 0.761 3.239
25 H -0.197 1.197
26 H -0.208 1.208
27 H -0.197 1.197
28 C -0.176 4.176
29 H 0.126 0.874
30 H 0.117 0.883
31 H 0.140 0.860
32 H 0.091 0.909
33 H 0.086 0.914
34 H 0.146 0.854
35 H 0.149 0.851
36 H 0.149 0.851
37 H 0.264 0.736
38 H 0.265 0.735
39 H 0.110 0.890
40 H 0.110 0.890
41 H 0.230 0.770
42 H 0.085 0.915
43 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -22.038 11.724 -14.900 29.072
hybrid contribution 0.618 -0.186 0.328 0.724
sum -21.420 11.538 -14.573 28.360
Atomic orbital electron populations
1.23887 0.95383 1.02594 0.99013 1.22702 0.95685 0.97913 1.01094
1.21845 0.87891 0.96905 0.92141 1.86128 1.42243 1.35573 1.58145
1.18670 0.90622 0.85861 0.94419 1.21226 1.04529 0.94445 1.04229
1.20689 0.93409 0.97331 0.96405 1.20830 1.01568 0.98805 0.98673
1.17332 0.87609 0.94797 0.91040 1.43145 1.31257 1.13195 1.41951
1.20412 0.82656 0.83651 0.84095 1.90841 1.64865 1.32450 1.47647
1.19651 0.82931 0.84462 0.84316 1.90767 1.66577 1.32818 1.50332
1.45515 1.36116 1.13381 1.37376 1.21147 0.91107 0.98309 0.91568
1.19623 0.84847 0.89006 0.85534 1.90540 1.64843 1.46704 1.45758
1.41763 1.31650 1.12914 1.31744 1.19702 1.16646 0.88305 1.18908
0.87623 1.25327 0.96912 0.99788 0.95573 1.69598 1.29380 1.33010
1.21394 0.85858 0.78617 0.81330 0.78092 1.19742 1.20837 1.19729
1.20318 0.94795 1.00241 1.02203 0.87360 0.88269 0.86048 0.90894
0.91396 0.85399 0.85149 0.85135 0.73593 0.73515 0.89004 0.88999
0.76997 0.91488 0.83729
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.92 14.31 29.01 0.42 -0.50 16
2 C -0.16 -1.08 9.89 -36.02 -0.36 -1.44 16
3 C 0.09 0.64 5.15 36.01 0.19 0.83 16
4 O -0.31 -3.44 10.12 -19.43 -0.20 -3.64 16
5 C 0.15 1.68 6.68 -39.25 -0.26 1.42 16
6 C -0.22 -1.92 9.04 -39.39 -0.36 -2.28 16
7 C -0.06 -0.46 10.03 -39.64 -0.40 -0.85 16
8 C -0.18 -1.55 9.96 -39.35 -0.39 -1.94 16
9 C 0.19 2.09 6.27 -83.77 -0.53 1.57 16
10 N -0.65 -7.26 5.32 -10.31 -0.05 -7.32 16
11 C 0.51 7.20 7.62 -11.63 -0.09 7.11 16
12 O -0.49 -8.01 14.16 5.47 0.08 -7.94 16
13 C 0.51 7.78 7.89 -11.63 -0.09 7.69 16
14 O -0.53 -8.51 16.48 5.49 0.09 -8.42 16
15 N -0.67 -11.29 5.52 -61.94 -0.34 -11.63 16
16 C 0.11 1.86 6.15 -5.19 -0.03 1.83 16
17 C 0.42 9.60 7.85 -10.99 -0.09 9.51 16
18 O -0.59 -15.29 15.24 5.55 0.08 -15.20 16
19 N -0.55 -13.27 5.29 -10.97 -0.06 -13.33 16
20 C -0.31 -8.25 9.68 -14.93 -0.14 -8.39 16
21 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16
22 C 0.03 0.70 5.50 -17.47 -0.10 0.61 16
23 N -0.89 -23.49 13.05 55.50 0.72 -22.77 16
24 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16
25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16
26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16
27 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16
28 C -0.15 -1.96 8.59 -39.23 -0.34 -2.30 16
29 H 0.11 0.46 8.06 -52.49 -0.42 0.04 16
30 H 0.10 0.41 7.90 -52.49 -0.41 0.00 16
31 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16
32 H 0.07 0.45 7.65 -51.93 -0.40 0.05 16
33 H 0.07 0.40 7.39 -51.93 -0.38 0.01 16
34 H 0.13 0.78 6.29 -52.48 -0.33 0.45 16
35 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16
36 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16
37 H 0.43 3.83 8.30 -40.82 -0.34 3.49 16
38 H 0.42 7.65 6.91 -40.82 -0.28 7.37 16
39 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16
40 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16
41 H 0.40 9.15 7.90 -40.82 -0.32 8.83 16
42 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16
43 H 0.15 2.10 6.41 -52.48 -0.34 1.76 16
LS Contribution 383.40 15.07 5.78 5.78
Total: -1.00 -32.25 383.40 -6.34 -38.58
By element:
Atomic # 1 Polarization: 22.47 SS G_CDS: -4.85 Total: 17.61 kcal
Atomic # 6 Polarization: 15.42 SS G_CDS: -2.57 Total: 12.86 kcal
Atomic # 7 Polarization: -55.32 SS G_CDS: 0.27 Total: -55.05 kcal
Atomic # 8 Polarization: -35.25 SS G_CDS: 0.06 Total: -35.20 kcal
Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -32.25 -6.34 -38.58 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000357290900.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.002 kcal
(2) G-P(sol) polarization free energy of solvation -32.245 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.248 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.586 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds