Wall clock time and date at job start Wed Apr 1 2020 06:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50708 * 119.99852 * 2 1 4 4 O 1.42899 * 109.47009 * 134.72076 * 3 2 1 5 5 C 1.35903 * 116.99595 * 179.97438 * 4 3 2 6 6 C 1.38813 * 120.02093 * 359.73526 * 5 4 3 7 7 C 1.38175 * 120.09977 * 179.71872 * 6 5 4 8 8 C 1.38154 * 120.12674 * 0.54489 * 7 6 5 9 9 C 1.38944 * 120.03195 * 359.73215 * 8 7 6 10 10 N 1.39724 * 120.04605 * 180.02562 * 9 8 7 11 11 C 1.34779 * 120.00065 * 213.33543 * 10 9 8 12 12 O 1.21380 * 119.99845 * 5.28247 * 11 10 9 13 13 C 1.49351 * 120.00164 * 185.27251 * 11 10 9 14 14 O 1.21356 * 120.00220 * 0.02562 * 13 11 10 15 15 N 1.34779 * 120.00164 * 179.97438 * 13 11 10 16 16 C 1.46503 * 120.00168 * 180.02562 * 15 13 11 17 17 C 1.50695 * 109.46911 * 180.02562 * 16 15 13 18 18 O 1.21288 * 120.00276 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99973 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00424 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99459 * 359.97438 * 20 19 17 22 22 C 1.38947 * 119.99891 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00644 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99666 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46717 * 60.00076 * 24 22 20 26 26 H 1.48499 * 109.46995 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47382 * 300.00397 * 24 22 20 28 28 C 1.38572 * 120.01449 * 180.02562 * 5 4 3 29 29 H 1.07998 * 119.99650 * 180.27347 * 1 2 3 30 30 H 1.07998 * 119.99798 * 0.27973 * 1 2 3 31 31 H 1.07999 * 120.00329 * 179.72035 * 2 1 3 32 32 H 1.08994 * 109.46765 * 254.72284 * 3 2 1 33 33 H 1.09005 * 109.46610 * 14.72447 * 3 2 1 34 34 H 1.08007 * 119.95069 * 359.97438 * 6 5 4 35 35 H 1.07994 * 119.94148 * 180.27178 * 7 6 5 36 36 H 1.08005 * 119.98450 * 179.74084 * 8 7 6 37 37 H 0.97007 * 120.00149 * 33.33701 * 10 9 8 38 38 H 0.97003 * 119.99919 * 0.02562 * 15 13 11 39 39 H 1.09001 * 109.47138 * 300.00363 * 16 15 13 40 40 H 1.09000 * 109.46781 * 60.00048 * 16 15 13 41 41 H 0.97008 * 120.00062 * 0.02562 * 19 17 16 42 42 H 0.96995 * 120.00330 * 180.02562 * 23 22 20 43 43 H 1.08004 * 120.06283 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1227 1.2437 0.9573 5 6 3.9051 2.3477 1.0834 6 6 3.6611 3.4654 0.2971 7 6 4.4520 4.5908 0.4281 8 6 5.4951 4.6037 1.3338 9 6 5.7478 3.4859 2.1195 10 7 6.8023 3.4989 3.0360 11 6 7.4850 2.3657 3.2939 12 8 7.2480 1.3572 2.6614 13 6 8.5331 2.3510 4.3577 14 8 8.7699 3.3593 4.9903 15 7 9.2154 1.2178 4.6160 16 6 10.2432 1.2032 5.6599 17 6 10.8510 -0.1730 5.7472 18 8 10.4642 -1.0547 5.0097 19 7 11.8252 -0.4237 6.6441 20 6 12.3786 -1.6756 6.7232 21 1 12.0335 -2.4609 6.0670 22 6 13.3826 -1.9341 7.6483 23 7 13.8014 -0.9789 8.4477 24 14 14.1361 -3.6400 7.7566 25 1 14.7508 -3.9932 6.4517 26 1 15.1783 -3.6546 8.8143 27 1 13.0787 -4.6281 8.0891 28 6 4.9507 2.3561 1.9927 29 1 -0.5399 -0.9353 0.0045 30 1 -0.5400 0.9353 -0.0046 31 1 1.8501 -0.9353 0.0046 32 1 2.4796 1.4844 -0.9913 33 1 1.3843 2.1168 0.2612 34 1 2.8493 3.4567 -0.4152 35 1 4.2571 5.4605 -0.1818 36 1 6.1145 5.4832 1.4313 37 1 7.0432 4.3234 3.4867 38 1 9.0260 0.4117 4.1106 39 1 11.0196 1.9282 5.4155 40 1 9.7920 1.4630 6.6175 41 1 12.1349 0.2816 7.2337 42 1 14.5025 -1.1594 9.0933 43 1 5.1446 1.4859 2.6023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357290900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:46 Heat of formation + Delta-G solvation = -85.585766 kcal Electronic energy + Delta-G solvation = -28195.970667 eV Core-core repulsion = 23821.746420 eV Total energy + Delta-G solvation = -4374.224246 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.24215 -40.24308 -39.09544 -38.16021 -37.67142 -35.31288 -34.55639 -34.28906 -33.72766 -31.42970 -30.80372 -29.79239 -28.28236 -26.98221 -25.33636 -24.19671 -23.02244 -22.00068 -20.56047 -20.19677 -19.79019 -19.10149 -18.47631 -17.94051 -17.01708 -16.71793 -16.36679 -16.33641 -16.05932 -15.86035 -15.39543 -15.35212 -14.95214 -14.65386 -14.49284 -14.11892 -13.95378 -13.85052 -13.52342 -13.45003 -13.32237 -12.92607 -12.29766 -12.21746 -12.07280 -11.98813 -11.79754 -11.67034 -11.60892 -11.20411 -11.12243 -10.60545 -10.51903 -10.33562 -9.98775 -9.72049 -9.65843 -9.11508 -8.72319 -8.69636 -8.39325 -8.13810 -6.54414 -3.96545 0.76164 1.13524 1.48449 1.58981 2.15122 2.95859 3.08818 3.12920 3.20913 3.24803 3.50426 3.55697 3.68448 4.08203 4.31773 4.43233 4.51708 4.55363 4.69778 4.76547 4.80256 4.86174 4.91799 5.03966 5.13288 5.20029 5.35641 5.44978 5.70642 5.79924 5.85233 5.91118 5.95523 6.02773 6.05124 6.09819 6.13602 6.32675 6.46072 6.80296 7.11031 7.33036 7.43667 7.63571 7.86115 7.99959 8.40881 9.01381 9.34250 9.82120 10.62167 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.001750 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.526712 B =15997.973346 C =17594.145216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.156 4.156 3 C 0.087 3.913 4 O -0.307 6.307 5 C 0.150 3.850 6 C -0.225 4.225 7 C -0.060 4.060 8 C -0.178 4.178 9 C 0.187 3.813 10 N -0.648 5.648 11 C 0.510 3.490 12 O -0.486 6.486 13 C 0.507 3.493 14 O -0.527 6.527 15 N -0.669 5.669 16 C 0.106 3.894 17 C 0.425 3.575 18 O -0.592 6.592 19 N -0.546 5.546 20 C -0.306 4.306 21 H 0.106 0.894 22 C 0.027 3.973 23 N -0.894 5.894 24 Si 0.935 3.065 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.272 1.272 28 C -0.155 4.155 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.425 0.575 38 H 0.424 0.576 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.396 0.604 42 H 0.275 0.725 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.035 12.590 -14.748 29.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.012 3.988 4 O -0.221 6.221 5 C 0.104 3.896 6 C -0.244 4.244 7 C -0.078 4.078 8 C -0.199 4.199 9 C 0.092 3.908 10 N -0.295 5.295 11 C 0.292 3.708 12 O -0.358 6.358 13 C 0.286 3.714 14 O -0.405 6.405 15 N -0.324 5.324 16 C -0.021 4.021 17 C 0.210 3.790 18 O -0.478 6.478 19 N -0.181 5.181 20 C -0.436 4.436 21 H 0.124 0.876 22 C -0.176 4.176 23 N -0.534 5.534 24 Si 0.761 3.239 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.176 4.176 29 H 0.126 0.874 30 H 0.117 0.883 31 H 0.140 0.860 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.264 0.736 38 H 0.265 0.735 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.230 0.770 42 H 0.085 0.915 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -22.038 11.724 -14.900 29.072 hybrid contribution 0.618 -0.186 0.328 0.724 sum -21.420 11.538 -14.573 28.360 Atomic orbital electron populations 1.23887 0.95383 1.02594 0.99013 1.22702 0.95685 0.97913 1.01094 1.21845 0.87891 0.96905 0.92141 1.86128 1.42243 1.35573 1.58145 1.18670 0.90622 0.85861 0.94419 1.21226 1.04529 0.94445 1.04229 1.20689 0.93409 0.97331 0.96405 1.20830 1.01568 0.98805 0.98673 1.17332 0.87609 0.94797 0.91040 1.43145 1.31257 1.13195 1.41951 1.20412 0.82656 0.83651 0.84095 1.90841 1.64865 1.32450 1.47647 1.19651 0.82931 0.84462 0.84316 1.90767 1.66577 1.32818 1.50332 1.45515 1.36116 1.13381 1.37376 1.21147 0.91107 0.98309 0.91568 1.19623 0.84847 0.89006 0.85534 1.90540 1.64843 1.46704 1.45758 1.41763 1.31650 1.12914 1.31744 1.19702 1.16646 0.88305 1.18908 0.87623 1.25327 0.96912 0.99788 0.95573 1.69598 1.29380 1.33010 1.21394 0.85858 0.78617 0.81330 0.78092 1.19742 1.20837 1.19729 1.20318 0.94795 1.00241 1.02203 0.87360 0.88269 0.86048 0.90894 0.91396 0.85399 0.85149 0.85135 0.73593 0.73515 0.89004 0.88999 0.76997 0.91488 0.83729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 14.31 29.01 0.42 -0.50 16 2 C -0.16 -1.08 9.89 -36.02 -0.36 -1.44 16 3 C 0.09 0.64 5.15 36.01 0.19 0.83 16 4 O -0.31 -3.44 10.12 -19.43 -0.20 -3.64 16 5 C 0.15 1.68 6.68 -39.25 -0.26 1.42 16 6 C -0.22 -1.92 9.04 -39.39 -0.36 -2.28 16 7 C -0.06 -0.46 10.03 -39.64 -0.40 -0.85 16 8 C -0.18 -1.55 9.96 -39.35 -0.39 -1.94 16 9 C 0.19 2.09 6.27 -83.77 -0.53 1.57 16 10 N -0.65 -7.26 5.32 -10.31 -0.05 -7.32 16 11 C 0.51 7.20 7.62 -11.63 -0.09 7.11 16 12 O -0.49 -8.01 14.16 5.47 0.08 -7.94 16 13 C 0.51 7.78 7.89 -11.63 -0.09 7.69 16 14 O -0.53 -8.51 16.48 5.49 0.09 -8.42 16 15 N -0.67 -11.29 5.52 -61.94 -0.34 -11.63 16 16 C 0.11 1.86 6.15 -5.19 -0.03 1.83 16 17 C 0.42 9.60 7.85 -10.99 -0.09 9.51 16 18 O -0.59 -15.29 15.24 5.55 0.08 -15.20 16 19 N -0.55 -13.27 5.29 -10.97 -0.06 -13.33 16 20 C -0.31 -8.25 9.68 -14.93 -0.14 -8.39 16 21 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 22 C 0.03 0.70 5.50 -17.47 -0.10 0.61 16 23 N -0.89 -23.49 13.05 55.50 0.72 -22.77 16 24 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 28 C -0.15 -1.96 8.59 -39.23 -0.34 -2.30 16 29 H 0.11 0.46 8.06 -52.49 -0.42 0.04 16 30 H 0.10 0.41 7.90 -52.49 -0.41 0.00 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.07 0.45 7.65 -51.93 -0.40 0.05 16 33 H 0.07 0.40 7.39 -51.93 -0.38 0.01 16 34 H 0.13 0.78 6.29 -52.48 -0.33 0.45 16 35 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 36 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 37 H 0.43 3.83 8.30 -40.82 -0.34 3.49 16 38 H 0.42 7.65 6.91 -40.82 -0.28 7.37 16 39 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.40 9.15 7.90 -40.82 -0.32 8.83 16 42 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.15 2.10 6.41 -52.48 -0.34 1.76 16 LS Contribution 383.40 15.07 5.78 5.78 Total: -1.00 -32.25 383.40 -6.34 -38.58 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -4.85 Total: 17.61 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: -2.57 Total: 12.86 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.27 Total: -55.05 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: 0.06 Total: -35.20 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.25 -6.34 -38.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357290900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.002 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds