Wall clock time and date at job start Wed Apr 1 2020 06:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50708 * 119.99852 * 2 1 4 4 O 1.42899 * 109.47009 * 134.72076 * 3 2 1 5 5 C 1.35903 * 116.99595 * 179.97438 * 4 3 2 6 6 C 1.38813 * 120.02093 * 359.73526 * 5 4 3 7 7 C 1.38175 * 120.09977 * 179.71872 * 6 5 4 8 8 C 1.38154 * 120.12674 * 0.54489 * 7 6 5 9 9 C 1.38944 * 120.03195 * 359.73215 * 8 7 6 10 10 N 1.39724 * 120.04605 * 180.02562 * 9 8 7 11 11 C 1.34779 * 120.00065 * 213.33543 * 10 9 8 12 12 O 1.21380 * 119.99845 * 5.28247 * 11 10 9 13 13 C 1.49351 * 120.00164 * 185.27251 * 11 10 9 14 14 O 1.21356 * 120.00220 * 0.02562 * 13 11 10 15 15 N 1.34779 * 120.00164 * 179.97438 * 13 11 10 16 16 C 1.46503 * 120.00168 * 180.02562 * 15 13 11 17 17 C 1.50695 * 109.46911 * 180.02562 * 16 15 13 18 18 O 1.21288 * 120.00276 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99973 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00424 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99459 * 359.97438 * 20 19 17 22 22 C 1.38947 * 119.99891 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00644 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99666 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46717 * 60.00076 * 24 22 20 26 26 H 1.48499 * 109.46995 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47382 * 300.00397 * 24 22 20 28 28 C 1.38572 * 120.01449 * 180.02562 * 5 4 3 29 29 H 1.07998 * 119.99650 * 180.27347 * 1 2 3 30 30 H 1.07998 * 119.99798 * 0.27973 * 1 2 3 31 31 H 1.07999 * 120.00329 * 179.72035 * 2 1 3 32 32 H 1.08994 * 109.46765 * 254.72284 * 3 2 1 33 33 H 1.09005 * 109.46610 * 14.72447 * 3 2 1 34 34 H 1.08007 * 119.95069 * 359.97438 * 6 5 4 35 35 H 1.07994 * 119.94148 * 180.27178 * 7 6 5 36 36 H 1.08005 * 119.98450 * 179.74084 * 8 7 6 37 37 H 0.97007 * 120.00149 * 33.33701 * 10 9 8 38 38 H 0.97003 * 119.99919 * 0.02562 * 15 13 11 39 39 H 1.09001 * 109.47138 * 300.00363 * 16 15 13 40 40 H 1.09000 * 109.46781 * 60.00048 * 16 15 13 41 41 H 0.97008 * 120.00062 * 0.02562 * 19 17 16 42 42 H 0.96995 * 120.00330 * 180.02562 * 23 22 20 43 43 H 1.08004 * 120.06283 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1227 1.2437 0.9573 5 6 3.9051 2.3477 1.0834 6 6 3.6611 3.4654 0.2971 7 6 4.4520 4.5908 0.4281 8 6 5.4951 4.6037 1.3338 9 6 5.7478 3.4859 2.1195 10 7 6.8023 3.4989 3.0360 11 6 7.4850 2.3657 3.2939 12 8 7.2480 1.3572 2.6614 13 6 8.5331 2.3510 4.3577 14 8 8.7699 3.3593 4.9903 15 7 9.2154 1.2178 4.6160 16 6 10.2432 1.2032 5.6599 17 6 10.8510 -0.1730 5.7472 18 8 10.4642 -1.0547 5.0097 19 7 11.8252 -0.4237 6.6441 20 6 12.3786 -1.6756 6.7232 21 1 12.0335 -2.4609 6.0670 22 6 13.3826 -1.9341 7.6483 23 7 13.8014 -0.9789 8.4477 24 14 14.1361 -3.6400 7.7566 25 1 14.7508 -3.9932 6.4517 26 1 15.1783 -3.6546 8.8143 27 1 13.0787 -4.6281 8.0891 28 6 4.9507 2.3561 1.9927 29 1 -0.5399 -0.9353 0.0045 30 1 -0.5400 0.9353 -0.0046 31 1 1.8501 -0.9353 0.0046 32 1 2.4796 1.4844 -0.9913 33 1 1.3843 2.1168 0.2612 34 1 2.8493 3.4567 -0.4152 35 1 4.2571 5.4605 -0.1818 36 1 6.1145 5.4832 1.4313 37 1 7.0432 4.3234 3.4867 38 1 9.0260 0.4117 4.1106 39 1 11.0196 1.9282 5.4155 40 1 9.7920 1.4630 6.6175 41 1 12.1349 0.2816 7.2337 42 1 14.5025 -1.1594 9.0933 43 1 5.1446 1.4859 2.6023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357290900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:44 Heat of formation + Delta-G solvation = -109.950178 kcal Electronic energy + Delta-G solvation = -28197.027187 eV Core-core repulsion = 23821.746420 eV Total energy + Delta-G solvation = -4375.280767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.29160 -41.15973 -40.44526 -39.68984 -38.57238 -36.50487 -36.00833 -35.28773 -34.89429 -33.40113 -31.55998 -30.62203 -29.74657 -27.57315 -26.92495 -25.56974 -23.84847 -22.85116 -21.55532 -21.47395 -20.84909 -20.32144 -19.95871 -19.29963 -18.16202 -17.56304 -17.42945 -17.25558 -17.04211 -16.92798 -16.77604 -16.66215 -16.24961 -16.17645 -15.71287 -15.38268 -15.13480 -15.03317 -14.55217 -14.38831 -14.03985 -13.92841 -13.67655 -13.57849 -13.55473 -13.06911 -12.91986 -12.77343 -12.55460 -12.48138 -12.31401 -12.13821 -11.84735 -11.58512 -11.42884 -10.90959 -10.60755 -10.47292 -10.46447 -10.11018 -9.54859 -9.13427 -8.52255 -6.02368 -0.19091 0.40632 0.48939 1.00991 1.12588 1.37063 1.42874 1.53358 1.86754 1.94081 2.19980 2.29941 2.53197 2.74732 3.03045 3.14726 3.22959 3.77806 3.91780 4.02481 4.11472 4.15141 4.19805 4.23074 4.34645 4.34920 4.36144 4.47935 4.50075 4.60772 4.91488 4.94774 5.13901 5.16160 5.26976 5.37330 5.42246 5.59277 5.62125 5.70702 5.81036 5.90161 6.16093 6.42043 6.46451 6.52643 6.71600 7.02483 7.41237 7.93048 8.64007 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.001750 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.526712 B =15997.973346 C =17594.145216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.184 4.184 3 C 0.082 3.918 4 O -0.336 6.336 5 C 0.133 3.867 6 C -0.217 4.217 7 C -0.052 4.052 8 C -0.171 4.171 9 C 0.165 3.835 10 N -0.629 5.629 11 C 0.513 3.487 12 O -0.517 6.517 13 C 0.515 3.485 14 O -0.531 6.531 15 N -0.678 5.678 16 C 0.119 3.881 17 C 0.427 3.573 18 O -0.627 6.627 19 N -0.554 5.554 20 C -0.340 4.340 21 H 0.084 0.916 22 C -0.007 4.007 23 N -0.912 5.912 24 Si 0.995 3.005 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.271 1.271 28 C -0.185 4.185 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.156 0.844 35 H 0.170 0.830 36 H 0.159 0.841 37 H 0.436 0.564 38 H 0.419 0.581 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.401 0.599 42 H 0.281 0.719 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.160 14.861 -15.772 31.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.202 4.202 3 C 0.009 3.991 4 O -0.250 6.250 5 C 0.087 3.913 6 C -0.236 4.236 7 C -0.070 4.070 8 C -0.191 4.191 9 C 0.071 3.929 10 N -0.277 5.277 11 C 0.295 3.705 12 O -0.391 6.391 13 C 0.295 3.705 14 O -0.409 6.409 15 N -0.332 5.332 16 C -0.008 4.008 17 C 0.214 3.786 18 O -0.515 6.515 19 N -0.190 5.190 20 C -0.470 4.470 21 H 0.102 0.898 22 C -0.208 4.208 23 N -0.552 5.552 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.206 4.206 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.174 0.826 35 H 0.188 0.812 36 H 0.176 0.824 37 H 0.277 0.723 38 H 0.258 0.742 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.236 0.764 42 H 0.090 0.910 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -23.182 14.065 -15.913 31.440 hybrid contribution 0.811 -0.822 0.570 1.288 sum -22.371 13.243 -15.343 30.187 Atomic orbital electron populations 1.24119 0.94770 1.03882 0.96401 1.22719 0.96406 0.97515 1.03555 1.22080 0.87404 0.97696 0.91966 1.86095 1.43254 1.36243 1.59435 1.18842 0.90603 0.86893 0.94921 1.21587 1.05013 0.93511 1.03499 1.21194 0.92031 0.98065 0.95737 1.21191 1.01870 0.98438 0.97576 1.17542 0.87645 0.95542 0.92127 1.42998 1.30567 1.12574 1.41598 1.20157 0.82564 0.84129 0.83669 1.90842 1.65813 1.33685 1.48789 1.19758 0.82677 0.83754 0.84262 1.90759 1.66763 1.32762 1.50574 1.45536 1.36488 1.13733 1.37444 1.21037 0.91783 0.95052 0.92904 1.20415 0.83683 0.90542 0.83929 1.90519 1.65619 1.48594 1.46771 1.41783 1.32294 1.12422 1.32476 1.19687 1.18257 0.89131 1.19883 0.89802 1.26079 0.96686 1.03278 0.94755 1.69653 1.29587 1.34406 1.21514 0.84956 0.77919 0.77009 0.78269 1.19644 1.19414 1.19664 1.20271 0.96786 1.00078 1.03451 0.86373 0.86628 0.87323 0.89806 0.89560 0.82637 0.81217 0.82365 0.72273 0.74236 0.86931 0.87054 0.76417 0.90975 0.86939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 14.31 67.78 0.97 -0.47 16 2 C -0.18 -2.53 9.89 25.65 0.25 -2.28 16 3 C 0.08 1.16 5.15 71.24 0.37 1.53 16 4 O -0.34 -7.79 10.12 -92.45 -0.94 -8.73 16 5 C 0.13 2.99 6.68 22.49 0.15 3.14 16 6 C -0.22 -3.18 9.04 22.39 0.20 -2.98 16 7 C -0.05 -0.60 10.03 22.23 0.22 -0.38 16 8 C -0.17 -2.49 9.96 22.42 0.22 -2.27 16 9 C 0.17 3.62 6.27 38.20 0.24 3.86 16 10 N -0.63 -13.86 5.32 -304.88 -1.62 -15.49 16 11 C 0.51 14.80 7.62 87.24 0.66 15.47 16 12 O -0.52 -18.00 14.16 -3.34 -0.05 -18.05 16 13 C 0.52 15.73 7.89 87.24 0.69 16.42 16 14 O -0.53 -16.50 16.48 -3.27 -0.05 -16.55 16 15 N -0.68 -23.06 5.52 -468.24 -2.59 -25.64 16 16 C 0.12 4.12 6.15 85.63 0.53 4.65 16 17 C 0.43 19.65 7.85 87.66 0.69 20.34 16 18 O -0.63 -33.41 15.24 -3.06 -0.05 -33.46 16 19 N -0.55 -27.43 5.29 -307.00 -1.62 -29.05 16 20 C -0.34 -18.74 9.68 84.04 0.81 -17.93 16 21 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 22 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 23 N -0.91 -47.71 13.05 21.66 0.28 -47.42 16 24 Si 1.00 41.82 29.55 68.60 2.03 43.85 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 C -0.18 -4.92 8.59 22.50 0.19 -4.72 16 29 H 0.12 0.84 8.06 -2.91 -0.02 0.82 16 30 H 0.12 0.68 7.90 -2.91 -0.02 0.66 16 31 H 0.11 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.08 0.93 7.65 -2.39 -0.02 0.91 16 33 H 0.09 0.84 7.39 -2.38 -0.02 0.83 16 34 H 0.16 1.34 6.29 -2.91 -0.02 1.32 16 35 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 36 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.44 7.30 8.30 -92.70 -0.77 6.53 16 38 H 0.42 15.65 6.91 -92.71 -0.64 15.01 16 39 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 40 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 41 H 0.40 18.71 7.90 -92.70 -0.73 17.97 16 42 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 43 H 0.11 3.64 6.41 -2.91 -0.02 3.62 16 Total: -1.00 -72.09 383.40 1.03 -71.07 By element: Atomic # 1 Polarization: 46.04 SS G_CDS: -1.04 Total: 45.00 kcal Atomic # 6 Polarization: 27.81 SS G_CDS: 6.67 Total: 34.48 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -5.55 Total: -117.61 kcal Atomic # 8 Polarization: -75.71 SS G_CDS: -1.08 Total: -76.79 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -72.09 1.03 -71.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357290900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.883 kcal (2) G-P(sol) polarization free energy of solvation -72.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds