Wall clock time and date at job start Wed Apr 1 2020 06:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47388 * 2 1 4 4 C 1.50703 * 109.46935 * 239.99804 * 2 1 3 5 5 H 1.08008 * 119.99707 * 240.00257 * 4 2 1 6 6 C 1.37871 * 120.00185 * 60.00107 * 4 2 1 7 7 N 1.31512 * 119.99953 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00300 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46887 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47614 * 120.00105 * 8 6 4 11 11 H 1.48504 * 109.47235 * 240.00395 * 8 6 4 12 12 N 1.46507 * 109.47042 * 120.00120 * 2 1 3 13 13 C 1.46498 * 120.00070 * 59.99247 * 12 2 1 14 14 C 1.34771 * 119.99505 * 240.00088 * 12 2 1 15 15 O 1.21601 * 120.00502 * 359.97438 * 14 12 2 16 16 N 1.34784 * 119.99733 * 180.02562 * 14 12 2 17 17 C 1.40210 * 120.00133 * 184.70203 * 16 14 12 18 18 C 1.36790 * 120.40373 * 120.30993 * 17 16 14 19 19 C 1.40217 * 119.23695 * 179.77650 * 18 17 16 20 20 C 1.35247 * 120.03601 * 0.49898 * 19 18 17 21 21 N 1.35965 * 120.81953 * 359.49920 * 20 19 18 22 22 C 1.46499 * 119.61268 * 180.27724 * 21 20 19 23 23 C 1.53006 * 109.47174 * 89.99784 * 22 21 20 24 24 F 1.39895 * 109.47047 * 59.99480 * 23 22 21 25 25 F 1.39895 * 109.46935 * 179.97438 * 23 22 21 26 26 F 1.39899 * 109.46919 * 299.99712 * 23 22 21 27 27 C 1.34666 * 120.76851 * 0.24914 * 21 20 19 28 28 O 1.22067 * 120.02690 * 179.97438 * 27 21 20 29 29 H 1.08998 * 109.47162 * 300.00101 * 1 2 3 30 30 H 1.09003 * 109.46790 * 60.00041 * 1 2 3 31 31 H 1.08994 * 109.47388 * 180.02562 * 1 2 3 32 32 H 0.97006 * 120.00262 * 179.97438 * 7 6 4 33 33 H 1.08990 * 109.47480 * 270.00721 * 13 12 2 34 34 H 1.09003 * 109.46821 * 30.00487 * 13 12 2 35 35 H 1.09000 * 109.46699 * 149.99763 * 13 12 2 36 36 H 0.97003 * 119.99532 * 4.69718 * 16 14 12 37 37 H 1.08000 * 120.37740 * 0.04474 * 18 17 16 38 38 H 1.08005 * 119.97760 * 180.27019 * 19 18 17 39 39 H 1.07997 * 119.59383 * 179.77068 * 20 19 18 40 40 H 1.08996 * 109.47183 * 209.99538 * 22 21 20 41 41 H 1.08996 * 109.47315 * 329.99821 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5887 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3212 -1.1205 -4.0079 9 1 3.1463 -2.2872 -3.6037 10 1 1.1660 -1.5868 -4.8161 11 1 3.1466 -0.1876 -4.8165 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0833 15 8 3.0873 1.1284 1.8907 16 7 3.2428 -0.6711 3.1836 17 6 3.9657 0.0356 4.1551 18 6 3.5066 0.1101 5.4415 19 6 4.2516 0.8193 6.3945 20 6 5.4045 1.4286 6.0359 21 7 5.8625 1.3559 4.7578 22 6 7.1179 2.0208 4.3997 23 6 8.2846 1.0524 4.6049 24 9 8.1048 -0.0728 3.7933 25 9 9.4832 1.6872 4.2624 26 9 8.3322 0.6573 5.9460 27 6 5.1760 0.6793 3.8174 28 8 5.5994 0.6231 2.6739 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.7096 1.1617 -3.4845 33 1 0.7375 -2.1443 1.9993 34 1 1.5294 -2.5969 0.4709 35 1 2.4628 -2.5819 1.9864 36 1 3.0663 -1.6174 3.3032 37 1 2.5833 -0.3755 5.7209 38 1 3.9025 0.8822 7.4146 39 1 5.9707 1.9761 6.7748 40 1 7.0807 2.3287 3.3548 41 1 7.2579 2.8975 5.0320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362669567.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:45:51 Heat of formation + Delta-G solvation = -155.967142 kcal Electronic energy + Delta-G solvation = -31594.211911 eV Core-core repulsion = 26675.078959 eV Total energy + Delta-G solvation = -4919.132952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.39753 -47.95913 -47.81542 -41.53985 -39.36079 -36.92128 -36.12146 -34.95318 -33.48016 -32.50873 -29.89291 -29.57407 -28.53527 -26.06660 -25.14831 -24.70957 -23.68149 -22.62191 -21.34748 -19.30045 -19.06050 -18.80635 -18.52062 -17.62108 -17.46536 -17.10097 -16.70057 -16.19996 -15.56525 -15.19407 -14.89236 -14.76676 -14.66487 -14.57825 -14.40069 -14.30773 -14.01346 -13.97965 -13.95706 -13.30680 -13.05867 -12.82665 -12.65276 -12.57695 -12.44787 -12.31311 -11.84178 -11.60640 -11.46696 -10.99632 -10.79016 -10.66973 -10.48565 -10.17615 -10.10021 -10.08219 -9.29765 -9.10526 -9.00649 -8.35911 -7.82591 -7.44421 -6.00055 -4.06884 0.62211 1.84513 2.01787 2.38354 3.22658 3.31369 3.34606 3.39653 3.44192 3.59478 3.66190 3.87774 4.02462 4.33828 4.35702 4.44480 4.60446 4.71369 4.84795 4.96196 5.11785 5.31404 5.45968 5.69502 5.85919 5.97783 6.04253 6.26950 6.35250 6.74462 6.77607 6.86595 7.00768 7.08813 7.21318 7.56701 7.77320 7.90130 8.00908 8.15703 8.30390 8.76291 8.94841 9.38826 9.60495 11.05406 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014896 B = 0.003087 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.242477 B = 9066.689451 C =10225.081805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.274 3.726 3 H 0.064 0.936 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.606 5.606 13 C 0.087 3.913 14 C 0.703 3.297 15 O -0.573 6.573 16 N -0.687 5.687 17 C 0.077 3.923 18 C -0.056 4.056 19 C -0.199 4.199 20 C 0.107 3.893 21 N -0.504 5.504 22 C 0.054 3.946 23 C 0.439 3.561 24 F -0.168 7.168 25 F -0.176 7.176 26 F -0.183 7.183 27 C 0.515 3.485 28 O -0.491 6.491 29 H 0.010 0.990 30 H 0.093 0.907 31 H 0.029 0.971 32 H 0.262 0.738 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.402 0.598 37 H 0.138 0.862 38 H 0.150 0.850 39 H 0.163 0.837 40 H 0.145 0.855 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.178 -0.554 22.945 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.173 3.827 3 H 0.081 0.919 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.341 5.341 13 C -0.058 4.058 14 C 0.405 3.595 15 O -0.449 6.449 16 N -0.342 5.342 17 C -0.022 4.022 18 C -0.080 4.080 19 C -0.223 4.223 20 C -0.016 4.016 21 N -0.220 5.220 22 C -0.071 4.071 23 C 0.384 3.616 24 F -0.149 7.149 25 F -0.158 7.158 26 F -0.164 7.164 27 C 0.311 3.689 28 O -0.366 6.366 29 H 0.029 0.971 30 H 0.112 0.888 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.241 0.759 37 H 0.156 0.844 38 H 0.168 0.832 39 H 0.180 0.820 40 H 0.163 0.837 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.544 0.344 21.748 23.752 hybrid contribution 0.453 -1.178 -0.652 1.421 sum 9.998 -0.834 21.096 23.360 Atomic orbital electron populations 1.22095 0.98271 0.99312 1.00731 1.18857 0.90511 0.94335 0.78966 0.91851 1.21394 1.31409 1.12956 0.90335 0.92234 1.24875 0.95009 0.95021 0.98905 1.69894 1.36654 1.22671 1.23530 0.86441 0.78523 0.79630 0.82796 1.19836 1.20992 1.20946 1.47512 1.51416 1.11385 1.23792 1.21511 0.98071 0.83697 1.02500 1.15917 0.79237 0.85037 0.79272 1.90880 1.62003 1.15799 1.76231 1.42536 1.57938 1.12186 1.21552 1.17846 0.92510 1.02266 0.89578 1.21498 0.98444 0.95721 0.92318 1.20439 0.96355 1.04578 1.00956 1.21877 0.96387 0.98280 0.85076 1.45239 1.20397 1.46229 1.10133 1.22998 0.80508 0.94200 1.09358 1.20903 0.84453 0.82101 0.74174 1.93293 1.95118 1.53764 1.72706 1.93212 1.48691 1.81774 1.92087 1.93191 1.96706 1.91906 1.34604 1.17399 0.85467 0.80790 0.85208 1.91076 1.68439 1.59448 1.17662 0.97062 0.88815 0.95218 0.92829 0.93961 0.89794 0.93703 0.75929 0.84392 0.83219 0.81997 0.83693 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.97 37.16 0.33 -3.24 16 2 C 0.27 7.32 2.64 -69.08 -0.18 7.14 16 3 H 0.06 1.98 6.90 -51.93 -0.36 1.63 16 4 C -0.52 -14.72 7.99 -34.44 -0.28 -15.00 16 5 H 0.06 1.67 7.33 -52.48 -0.38 1.28 16 6 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.86 11.32 55.43 0.63 -25.24 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 N -0.61 -13.74 2.75 -181.00 -0.50 -14.24 16 13 C 0.09 1.50 9.24 59.85 0.55 2.05 16 14 C 0.70 16.08 7.78 -86.92 -0.68 15.41 16 15 O -0.57 -15.62 14.22 -12.52 -0.18 -15.80 16 16 N -0.69 -11.95 5.06 -14.07 -0.07 -12.02 16 17 C 0.08 1.20 5.77 -83.43 -0.48 0.72 16 18 C -0.06 -0.60 10.01 -39.36 -0.39 -0.99 16 19 C -0.20 -1.53 10.00 -39.90 -0.40 -1.93 16 20 C 0.11 0.83 9.77 -16.79 -0.16 0.66 16 21 N -0.50 -5.82 2.53 -119.53 -0.30 -6.13 16 22 C 0.05 0.49 5.40 -4.04 -0.02 0.47 16 23 C 0.44 4.51 3.29 37.16 0.12 4.63 16 24 F -0.17 -2.37 16.20 2.25 0.04 -2.33 16 25 F -0.18 -1.76 17.32 2.25 0.04 -1.72 16 26 F -0.18 -1.69 16.76 2.25 0.04 -1.66 16 27 C 0.51 8.70 6.51 -15.19 -0.10 8.60 16 28 O -0.49 -10.66 14.30 -12.94 -0.19 -10.85 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 31 H 0.03 0.66 7.67 -51.93 -0.40 0.27 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.55 7.02 -51.93 -0.36 1.18 16 35 H 0.04 0.63 6.30 -51.93 -0.33 0.31 16 36 H 0.40 5.61 6.52 -40.82 -0.27 5.34 16 37 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.15 0.63 8.06 -52.48 -0.42 0.20 16 39 H 0.16 0.55 8.04 -52.49 -0.42 0.13 16 40 H 0.15 1.56 7.39 -51.93 -0.38 1.17 16 41 H 0.14 0.58 8.01 -51.93 -0.42 0.16 16 LS Contribution 355.94 15.07 5.36 5.36 Total: -1.00 -38.73 355.94 -6.39 -45.12 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.46 Total: 2.47 kcal Atomic # 6 Polarization: 22.01 SS G_CDS: -1.78 Total: 20.23 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.24 Total: -57.62 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.36 Total: -26.65 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.11 Total: -5.71 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.73 -6.39 -45.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362669567.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.847 kcal (2) G-P(sol) polarization free energy of solvation -38.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds