Wall clock time and date at job start Wed Apr 1 2020 06:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47388 * 2 1 4 4 C 1.50703 * 109.46935 * 239.99804 * 2 1 3 5 5 H 1.08008 * 119.99707 * 240.00257 * 4 2 1 6 6 C 1.37871 * 120.00185 * 60.00107 * 4 2 1 7 7 N 1.31512 * 119.99953 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00300 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46887 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47614 * 120.00105 * 8 6 4 11 11 H 1.48504 * 109.47235 * 240.00395 * 8 6 4 12 12 N 1.46507 * 109.47042 * 120.00120 * 2 1 3 13 13 C 1.46498 * 120.00070 * 59.99247 * 12 2 1 14 14 C 1.34771 * 119.99505 * 240.00088 * 12 2 1 15 15 O 1.21601 * 120.00502 * 359.97438 * 14 12 2 16 16 N 1.34784 * 119.99733 * 180.02562 * 14 12 2 17 17 C 1.40210 * 120.00133 * 184.70203 * 16 14 12 18 18 C 1.36790 * 120.40373 * 120.30993 * 17 16 14 19 19 C 1.40217 * 119.23695 * 179.77650 * 18 17 16 20 20 C 1.35247 * 120.03601 * 0.49898 * 19 18 17 21 21 N 1.35965 * 120.81953 * 359.49920 * 20 19 18 22 22 C 1.46499 * 119.61268 * 180.27724 * 21 20 19 23 23 C 1.53006 * 109.47174 * 89.99784 * 22 21 20 24 24 F 1.39895 * 109.47047 * 59.99480 * 23 22 21 25 25 F 1.39895 * 109.46935 * 179.97438 * 23 22 21 26 26 F 1.39899 * 109.46919 * 299.99712 * 23 22 21 27 27 C 1.34666 * 120.76851 * 0.24914 * 21 20 19 28 28 O 1.22067 * 120.02690 * 179.97438 * 27 21 20 29 29 H 1.08998 * 109.47162 * 300.00101 * 1 2 3 30 30 H 1.09003 * 109.46790 * 60.00041 * 1 2 3 31 31 H 1.08994 * 109.47388 * 180.02562 * 1 2 3 32 32 H 0.97006 * 120.00262 * 179.97438 * 7 6 4 33 33 H 1.08990 * 109.47480 * 270.00721 * 13 12 2 34 34 H 1.09003 * 109.46821 * 30.00487 * 13 12 2 35 35 H 1.09000 * 109.46699 * 149.99763 * 13 12 2 36 36 H 0.97003 * 119.99532 * 4.69718 * 16 14 12 37 37 H 1.08000 * 120.37740 * 0.04474 * 18 17 16 38 38 H 1.08005 * 119.97760 * 180.27019 * 19 18 17 39 39 H 1.07997 * 119.59383 * 179.77068 * 20 19 18 40 40 H 1.08996 * 109.47183 * 209.99538 * 22 21 20 41 41 H 1.08996 * 109.47315 * 329.99821 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5887 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3212 -1.1205 -4.0079 9 1 3.1463 -2.2872 -3.6037 10 1 1.1660 -1.5868 -4.8161 11 1 3.1466 -0.1876 -4.8165 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0833 15 8 3.0873 1.1284 1.8907 16 7 3.2428 -0.6711 3.1836 17 6 3.9657 0.0356 4.1551 18 6 3.5066 0.1101 5.4415 19 6 4.2516 0.8193 6.3945 20 6 5.4045 1.4286 6.0359 21 7 5.8625 1.3559 4.7578 22 6 7.1179 2.0208 4.3997 23 6 8.2846 1.0524 4.6049 24 9 8.1048 -0.0728 3.7933 25 9 9.4832 1.6872 4.2624 26 9 8.3322 0.6573 5.9460 27 6 5.1760 0.6793 3.8174 28 8 5.5994 0.6231 2.6739 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.7096 1.1617 -3.4845 33 1 0.7375 -2.1443 1.9993 34 1 1.5294 -2.5969 0.4709 35 1 2.4628 -2.5819 1.9864 36 1 3.0663 -1.6174 3.3032 37 1 2.5833 -0.3755 5.7209 38 1 3.9025 0.8822 7.4146 39 1 5.9707 1.9761 6.7748 40 1 7.0807 2.3287 3.3548 41 1 7.2579 2.8975 5.0320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362669567.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:45:50 Heat of formation + Delta-G solvation = -183.279817 kcal Electronic energy + Delta-G solvation = -31595.396278 eV Core-core repulsion = 26675.078959 eV Total energy + Delta-G solvation = -4920.317319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.24750 -48.76565 -48.73453 -42.54770 -40.91867 -38.04001 -37.52062 -36.55898 -35.02289 -34.13322 -31.41938 -30.56645 -29.80552 -27.59899 -27.30165 -25.58817 -24.80072 -23.51029 -22.99277 -20.93771 -19.96187 -19.69474 -19.50583 -18.95675 -18.59550 -18.35798 -18.06372 -17.64686 -17.02831 -16.51027 -16.25091 -16.09580 -15.74608 -15.64637 -15.49225 -15.31047 -15.15707 -14.90457 -14.87778 -14.86403 -14.43019 -14.10520 -13.87977 -13.73581 -13.59418 -13.40547 -13.24692 -13.10402 -12.91726 -12.73721 -12.71809 -12.61892 -12.20545 -12.12361 -11.66958 -11.23433 -11.16629 -10.99465 -10.52924 -10.30786 -9.30573 -8.75007 -8.14746 -6.31001 -0.24871 0.96101 1.16810 1.37730 1.40267 1.51257 1.54931 1.91312 2.29370 2.40825 2.50776 2.78803 2.84146 3.04146 3.12353 3.18576 3.59796 3.81256 3.90698 4.09392 4.15168 4.33031 4.42956 4.65171 4.69720 4.74181 4.91165 4.97449 5.07442 5.07674 5.19471 5.43996 5.53272 5.54799 5.67664 5.76975 5.95366 5.99355 6.17364 6.26456 6.76783 6.95538 7.16604 7.36673 7.77802 8.89592 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014896 B = 0.003087 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.242477 B = 9066.689451 C =10225.081805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.280 3.720 3 H 0.003 0.997 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.269 1.269 10 H -0.268 1.268 11 H -0.286 1.286 12 N -0.617 5.617 13 C 0.084 3.916 14 C 0.696 3.304 15 O -0.630 6.630 16 N -0.668 5.668 17 C -0.007 4.007 18 C -0.007 4.007 19 C -0.204 4.204 20 C 0.123 3.877 21 N -0.501 5.501 22 C 0.052 3.948 23 C 0.442 3.558 24 F -0.196 7.196 25 F -0.175 7.175 26 F -0.172 7.172 27 C 0.498 3.502 28 O -0.569 6.569 29 H 0.021 0.979 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.265 0.735 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.415 0.585 37 H 0.166 0.834 38 H 0.201 0.799 39 H 0.221 0.779 40 H 0.120 0.880 41 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.275 -1.279 26.796 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.178 3.822 3 H 0.021 0.979 4 C -0.577 4.577 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.194 1.194 10 H -0.193 1.193 11 H -0.212 1.212 12 N -0.352 5.352 13 C -0.059 4.059 14 C 0.398 3.602 15 O -0.510 6.510 16 N -0.322 5.322 17 C -0.104 4.104 18 C -0.031 4.031 19 C -0.226 4.226 20 C 0.000 4.000 21 N -0.215 5.215 22 C -0.072 4.072 23 C 0.387 3.613 24 F -0.178 7.178 25 F -0.156 7.156 26 F -0.153 7.153 27 C 0.298 3.702 28 O -0.451 6.451 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.256 0.744 37 H 0.184 0.816 38 H 0.218 0.782 39 H 0.237 0.763 40 H 0.138 0.862 41 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 9.652 -0.428 25.715 27.470 hybrid contribution 0.513 -0.853 -1.542 1.836 sum 10.165 -1.282 24.173 26.255 Atomic orbital electron populations 1.21845 0.96655 1.00219 0.99931 1.18408 0.91612 0.91620 0.80598 0.97923 1.21626 1.31677 1.12999 0.91439 0.92679 1.25718 0.95095 0.95706 1.01908 1.70029 1.37395 1.23794 1.24344 0.85408 0.78313 0.78372 0.78897 1.19352 1.19277 1.21236 1.47391 1.51697 1.13267 1.22851 1.21751 1.00671 0.80676 1.02772 1.16194 0.78977 0.84586 0.80469 1.90815 1.63918 1.18530 1.77772 1.42064 1.57257 1.12607 1.20320 1.18134 0.93915 1.07396 0.91002 1.22012 0.98480 0.92266 0.90331 1.21099 0.95792 1.03272 1.02447 1.22999 0.96492 0.96619 0.83882 1.45303 1.20487 1.44819 1.10856 1.23270 0.79068 0.95283 1.09544 1.20996 0.84846 0.81370 0.74109 1.93245 1.95300 1.55480 1.73760 1.93214 1.48671 1.81574 1.92144 1.93203 1.96699 1.91837 1.33572 1.17755 0.86142 0.81168 0.85116 1.91018 1.70421 1.62989 1.20675 0.96042 0.91316 0.93228 0.92592 0.90951 0.91050 0.90595 0.74423 0.81638 0.78171 0.76295 0.86204 0.78761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 8.97 71.98 0.65 -5.82 16 2 C 0.28 15.80 2.64 44.25 0.12 15.92 16 3 H 0.00 0.19 6.90 -2.39 -0.02 0.17 16 4 C -0.54 -31.61 7.99 25.60 0.20 -31.41 16 5 H 0.05 3.20 7.33 -2.91 -0.02 3.17 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -55.29 11.32 21.44 0.24 -55.04 16 8 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 9 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 N -0.62 -29.08 2.75 -844.83 -2.33 -31.40 16 13 C 0.08 2.86 9.24 127.77 1.18 4.04 16 14 C 0.70 33.51 7.78 179.05 1.39 34.90 16 15 O -0.63 -37.08 14.22 12.99 0.18 -36.89 16 16 N -0.67 -23.72 5.06 -316.69 -1.60 -25.32 16 17 C -0.01 -0.22 5.77 38.18 0.22 0.00 16 18 C -0.01 -0.13 10.01 22.41 0.22 0.10 16 19 C -0.20 -2.00 10.00 22.06 0.22 -1.77 16 20 C 0.12 1.29 9.77 83.36 0.81 2.10 16 21 N -0.50 -10.78 2.53 -650.21 -1.65 -12.42 16 22 C 0.05 0.88 5.40 86.38 0.47 1.35 16 23 C 0.44 8.64 3.29 71.98 0.24 8.88 16 24 F -0.20 -5.80 16.20 44.97 0.73 -5.07 16 25 F -0.17 -3.34 17.32 44.97 0.78 -2.56 16 26 F -0.17 -2.69 16.76 44.97 0.75 -1.94 16 27 C 0.50 17.36 6.51 84.98 0.55 17.92 16 28 O -0.57 -26.87 14.30 11.49 0.16 -26.71 16 29 H 0.02 0.98 8.14 -2.39 -0.02 0.97 16 30 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16 31 H 0.05 2.25 7.67 -2.39 -0.02 2.23 16 32 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 34 H 0.07 2.62 7.02 -2.39 -0.02 2.60 16 35 H 0.08 2.07 6.30 -2.39 -0.02 2.06 16 36 H 0.42 11.46 6.52 -92.71 -0.60 10.85 16 37 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 38 H 0.20 0.06 8.06 -2.91 -0.02 0.04 16 39 H 0.22 -0.22 8.04 -2.91 -0.02 -0.25 16 40 H 0.12 2.76 7.39 -2.39 -0.02 2.74 16 41 H 0.20 0.84 8.01 -2.39 -0.02 0.82 16 Total: -1.00 -97.01 355.94 6.53 -90.48 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.50 Total: 11.58 kcal Atomic # 6 Polarization: 40.80 SS G_CDS: 6.73 Total: 47.53 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -5.33 Total: -124.20 kcal Atomic # 8 Polarization: -63.95 SS G_CDS: 0.35 Total: -63.60 kcal Atomic # 9 Polarization: -11.82 SS G_CDS: 2.26 Total: -9.56 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -97.01 6.53 -90.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362669567.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.798 kcal (2) G-P(sol) polarization free energy of solvation -97.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds