Wall clock time and date at job start Wed Apr 1 2020 06:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46979 * 2 1 4 4 C 1.50704 * 109.47459 * 240.00075 * 2 1 3 5 5 H 1.07994 * 120.00329 * 245.45630 * 4 2 1 6 6 C 1.37876 * 119.99685 * 65.45254 * 4 2 1 7 7 N 1.31521 * 120.00335 * 9.60729 * 6 4 2 8 8 Si 1.86802 * 119.99964 * 189.60802 * 6 4 2 9 9 H 1.48491 * 109.47136 * 84.99649 * 8 6 4 10 10 H 1.48499 * 109.46913 * 204.99531 * 8 6 4 11 11 H 1.48497 * 109.47022 * 324.99241 * 8 6 4 12 12 N 1.46507 * 109.47358 * 119.99941 * 2 1 3 13 13 C 1.46504 * 119.99605 * 60.00094 * 12 2 1 14 14 S 1.65593 * 120.00162 * 240.00267 * 12 2 1 15 15 O 1.42095 * 106.40272 * 156.46258 * 14 12 2 16 16 O 1.42103 * 106.40189 * 23.53564 * 14 12 2 17 17 N 1.65600 * 107.21938 * 270.00068 * 14 12 2 18 18 C 1.46814 * 120.33630 * 89.99910 * 17 14 12 19 19 C 1.53444 * 109.41157 * 231.88020 * 18 17 14 20 20 C 1.52726 * 108.60862 * 306.41718 * 19 18 17 21 21 H 1.09003 * 109.41281 * 302.82329 * 20 19 18 22 22 C 1.52977 * 111.71480 * 182.02246 * 20 19 18 23 23 O 1.45623 * 107.75782 * 178.35739 * 22 20 19 24 24 C 1.34107 * 117.97949 * 43.47554 * 23 22 20 25 25 O 1.21509 * 118.22451 * 165.39431 * 24 23 22 26 26 N 1.34115 * 123.55555 * 345.42017 * 24 23 22 27 27 C 1.45603 * 121.78780 * 3.93178 * 26 24 23 28 28 H 1.08999 * 109.00985 * 95.43812 * 27 26 24 29 29 C 1.46044 * 120.62779 * 269.95567 * 17 14 12 30 30 H 1.08994 * 109.46869 * 63.29400 * 1 2 3 31 31 H 1.08998 * 109.46803 * 183.29589 * 1 2 3 32 32 H 1.09001 * 109.46973 * 303.28565 * 1 2 3 33 33 H 0.96996 * 120.00402 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46834 * 270.00106 * 13 12 2 35 35 H 1.08998 * 109.47098 * 30.00337 * 13 12 2 36 36 H 1.08996 * 109.46841 * 150.00164 * 13 12 2 37 37 H 1.08995 * 109.48398 * 111.90239 * 18 17 14 38 38 H 1.09005 * 109.49098 * 351.86474 * 18 17 14 39 39 H 1.08999 * 109.61393 * 186.67896 * 19 18 17 40 40 H 1.08999 * 109.61015 * 66.15171 * 19 18 17 41 41 H 1.08994 * 109.81969 * 58.78221 * 22 20 19 42 42 H 1.08996 * 109.83211 * 297.93439 * 22 20 19 43 43 H 0.97007 * 119.10928 * 183.90364 * 26 24 23 44 44 H 1.08992 * 109.02757 * 7.20156 * 29 17 14 45 45 H 1.09001 * 109.89580 * 246.80709 * 29 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5787 -1.6369 -1.1339 6 6 1.7945 -0.1774 -2.4796 7 7 1.2999 1.0359 -2.5936 8 14 2.1747 -1.1785 -4.0102 9 1 1.0221 -2.0607 -4.3235 10 1 2.4216 -0.2622 -5.1523 11 1 3.3828 -2.0084 -3.7713 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 16 2.9704 0.1142 2.2862 15 8 2.8229 -0.5646 3.5258 16 8 2.6904 1.4973 2.1192 17 7 4.5438 -0.1041 1.8180 18 6 5.1811 0.8434 0.8953 19 6 5.8090 0.0729 -0.2737 20 6 6.7338 -1.0027 0.2923 21 1 7.4849 -0.5360 0.9296 22 6 7.4384 -1.7847 -0.8178 23 8 8.3222 -2.7543 -0.1858 24 6 7.8522 -3.4430 0.8645 25 8 8.4644 -4.4284 1.2260 26 7 6.7428 -3.1035 1.5373 27 6 5.9037 -1.9891 1.1202 28 1 5.0880 -2.3695 0.5054 29 6 5.3176 -1.2384 2.3156 30 1 -0.3633 0.4618 -0.9180 31 1 -0.3633 -1.0260 0.0591 32 1 -0.3633 0.5640 0.8591 33 1 1.1329 1.4111 -3.4723 34 1 0.7376 -2.1444 1.9993 35 1 1.5296 -2.5969 0.4708 36 1 2.4629 -2.5819 1.9863 37 1 5.9566 1.3988 1.4228 38 1 4.4329 1.5378 0.5129 39 1 6.3832 0.7581 -0.8972 40 1 5.0236 -0.3951 -0.8672 41 1 8.0209 -1.1030 -1.4375 42 1 6.7008 -2.3022 -1.4310 43 1 6.4924 -3.6144 2.3229 44 1 4.6582 -1.8989 2.8785 45 1 6.1228 -0.8842 2.9593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375962654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:47:31 Heat of formation + Delta-G solvation = -172.581961 kcal Electronic energy + Delta-G solvation = -31614.616140 eV Core-core repulsion = 27372.063406 eV Total energy + Delta-G solvation = -4242.552733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.25478 -39.61207 -38.41753 -38.03553 -37.83230 -36.90790 -35.88290 -34.42894 -33.84378 -31.01943 -30.86585 -28.34000 -27.17873 -26.97374 -25.03937 -24.38088 -22.88290 -22.35108 -20.98843 -19.96952 -19.37091 -18.84646 -18.45726 -18.30400 -18.13070 -17.32822 -17.08264 -16.55418 -16.23566 -15.91341 -15.49849 -15.37019 -15.26916 -15.09787 -14.80898 -14.57895 -14.40767 -14.01585 -13.84695 -13.70784 -13.42712 -13.24840 -13.15922 -12.92853 -12.91678 -12.78353 -12.70993 -12.60516 -12.57615 -12.20886 -12.16754 -11.94988 -11.93009 -11.83665 -11.58934 -11.34123 -11.12351 -10.48750 -10.41011 -10.01909 -9.61967 -8.06329 -6.15602 -0.36883 1.47144 1.50029 1.53161 1.57546 1.66855 1.97283 2.40436 2.49247 2.59199 3.22730 3.25572 3.39249 3.39469 3.68522 3.88879 3.91626 4.11106 4.18007 4.25685 4.42587 4.48547 4.55391 4.66706 4.71443 4.77215 4.80361 4.82475 4.90401 4.95693 4.97203 5.00957 5.15158 5.21152 5.28339 5.42471 5.50617 5.64929 5.73749 5.76449 5.90053 6.09058 6.33015 6.54542 6.93126 7.00752 7.52486 9.00671 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010040 B = 0.005554 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.259781 B = 5040.283656 C = 6624.785838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.273 3.727 3 H 0.033 0.967 4 C -0.518 4.518 5 H 0.072 0.928 6 C 0.029 3.971 7 N -0.916 5.916 8 Si 0.942 3.058 9 H -0.286 1.286 10 H -0.294 1.294 11 H -0.259 1.259 12 N -0.995 5.995 13 C 0.099 3.901 14 S 2.792 3.208 15 O -1.003 7.003 16 O -1.010 7.010 17 N -0.995 5.995 18 C 0.120 3.880 19 C -0.116 4.116 20 C -0.126 4.126 21 H 0.106 0.894 22 C 0.064 3.936 23 O -0.356 6.356 24 C 0.662 3.338 25 O -0.585 6.585 26 N -0.706 5.706 27 C 0.119 3.881 28 H 0.087 0.913 29 C 0.120 3.880 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.020 0.980 33 H 0.262 0.738 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.145 0.855 42 H 0.082 0.918 43 H 0.427 0.573 44 H 0.099 0.901 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 -3.157 4.927 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.169 3.831 3 H 0.051 0.949 4 C -0.557 4.557 5 H 0.091 0.909 6 C -0.172 4.172 7 N -0.554 5.554 8 Si 0.769 3.231 9 H -0.212 1.212 10 H -0.220 1.220 11 H -0.183 1.183 12 N -0.837 5.837 13 C -0.047 4.047 14 S 2.802 3.198 15 O -0.987 6.987 16 O -0.994 6.994 17 N -0.834 5.834 18 C -0.005 4.005 19 C -0.155 4.155 20 C -0.146 4.146 21 H 0.124 0.876 22 C -0.010 4.010 23 O -0.267 6.267 24 C 0.415 3.585 25 O -0.474 6.474 26 N -0.373 5.373 27 C 0.012 3.988 28 H 0.105 0.895 29 C -0.007 4.007 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.092 0.908 41 H 0.162 0.838 42 H 0.101 0.899 43 H 0.267 0.733 44 H 0.117 0.883 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.177 -2.870 5.415 11.036 hybrid contribution -0.561 -0.499 -1.058 1.297 sum 8.616 -3.369 4.357 10.226 Atomic orbital electron populations 1.21912 0.98589 0.99780 0.99297 1.18409 0.91273 0.91967 0.81483 0.94901 1.21469 1.35638 1.08456 0.90185 0.90947 1.25505 0.95364 0.95061 1.01251 1.70073 1.45692 1.15216 1.24467 0.85827 0.78793 0.78710 0.79765 1.21236 1.22033 1.18336 1.57686 1.64968 1.22328 1.38668 1.21396 1.00404 0.80615 1.02278 1.01468 0.72886 0.72554 0.72864 1.93523 1.86351 1.76262 1.42535 1.93546 1.84399 1.34334 1.87105 1.57789 1.29382 1.35542 1.60694 1.21528 0.98470 0.90481 0.89993 1.21773 0.98812 0.97254 0.97692 1.21960 0.98630 0.96292 0.97679 0.87609 1.23807 0.93515 0.89433 0.94196 1.86607 1.43998 1.53040 1.43024 1.17956 0.80102 0.81202 0.79194 1.90992 1.60523 1.26731 1.69113 1.45155 1.24851 1.34439 1.32859 1.21476 0.93537 0.86486 0.97259 0.89519 1.21399 0.97468 0.87197 0.94600 0.92984 0.93268 0.96137 0.92903 0.93263 0.90322 0.90701 0.88798 0.90748 0.87329 0.90813 0.83767 0.89925 0.73285 0.88299 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.89 9.12 71.98 0.66 -5.24 16 2 C 0.27 11.82 2.49 44.24 0.11 11.93 16 3 H 0.03 1.65 6.85 -2.39 -0.02 1.64 16 4 C -0.52 -22.78 8.01 25.60 0.20 -22.58 16 5 H 0.07 2.99 7.16 -2.91 -0.02 2.97 16 6 C 0.03 1.34 5.17 84.65 0.44 1.78 16 7 N -0.92 -46.85 12.16 21.45 0.26 -46.59 16 8 Si 0.94 37.41 29.55 68.60 2.03 39.43 16 9 H -0.29 -11.60 7.11 99.48 0.71 -10.90 16 10 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 12 N -1.00 -35.24 3.12 -520.42 -1.62 -36.87 16 13 C 0.10 2.87 9.21 127.77 1.18 4.05 16 14 S 2.79 94.89 6.03 -56.49 -0.34 94.55 16 15 O -1.00 -35.19 15.90 -128.00 -2.04 -37.22 16 16 O -1.01 -42.13 15.40 -128.00 -1.97 -44.10 16 17 N -0.99 -25.01 3.34 -515.60 -1.72 -26.73 16 18 C 0.12 2.78 6.33 86.47 0.55 3.32 16 19 C -0.12 -2.22 5.53 30.65 0.17 -2.05 16 20 C -0.13 -2.07 2.04 -10.82 -0.02 -2.10 16 21 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 22 C 0.06 1.06 6.67 71.97 0.48 1.54 16 23 O -0.36 -8.55 10.46 -50.16 -0.52 -9.08 16 24 C 0.66 17.24 8.54 129.89 1.11 18.35 16 25 O -0.58 -19.92 17.96 19.95 0.36 -19.57 16 26 N -0.71 -13.48 5.31 -573.87 -3.05 -16.53 16 27 C 0.12 2.17 2.98 45.18 0.13 2.30 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 C 0.12 2.27 5.99 86.41 0.52 2.79 16 30 H 0.05 2.49 6.84 -2.39 -0.02 2.47 16 31 H 0.05 1.94 7.56 -2.39 -0.02 1.92 16 32 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.26 12.98 8.31 -92.71 -0.77 12.21 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 35 H 0.08 2.32 6.92 -2.39 -0.02 2.30 16 36 H 0.07 1.75 7.79 -2.39 -0.02 1.73 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 2.19 7.12 -2.38 -0.02 2.18 16 39 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.43 6.84 8.78 -92.70 -0.81 6.03 16 44 H 0.10 1.81 7.07 -2.39 -0.02 1.80 16 45 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -66.53 368.44 -2.90 -69.42 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.20 Total: 19.18 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 5.52 Total: 14.10 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -6.13 Total: -126.72 kcal Atomic # 8 Polarization: -105.79 SS G_CDS: -4.17 Total: -109.96 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.43 kcal Atomic # 16 Polarization: 94.89 SS G_CDS: -0.34 Total: 94.55 kcal Total: -66.53 -2.90 -69.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375962654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.160 kcal (2) G-P(sol) polarization free energy of solvation -66.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds